BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0060.0012.p (314 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K906.1 B3K906_9BACI PpiC-type peptidyl-prolyl cis-trans isomerase 238 5e-61 B1DID8.1 B1DID8_9BACL PpiC-type peptidyl-prolyl cis-trans isomerase 133 2e-29 Q2B266.1 Q2B266_9BACI YacD 122 4e-26 A3IEB6.1 A3IEB6_9BACI Putative uncharacterized protein 107 1e-21 C0ZIC8.1 C0ZIC8_BREBN Putative uncharacterized protein yacD 107 2e-21 >B3K906.1 B3K906_9BACI PpiC-type peptidyl-prolyl cis-trans isomerase Length = 311 Score = 238 bits (607), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 132/308 (42%), Positives = 192/308 (62%), Gaps = 7/308 (2%) Query: 2 MTRQERLLRNAVILLAIATLMLGGLLFWSLRAMAILKGEAA---EGESSDIARAGDQPVT 58 MTRQE+ L VI+L L +GG + +S EA+ + S +A D+ +T Sbjct: 1 MTRQEKGLWATVIVLTACVLGMGGWMLFS----GGFSQEASPPWKTGSQPVASIQDRAIT 56 Query: 59 DQQWISELKKKHGDEVLLTLLNHIVVSKEAKALGITVTDKEIEKELQSSIAXXXXXXXXX 118 + +W+ ELKK++G E+L+T+LN V+ EAKA GI VT E+E E++ Sbjct: 57 EDEWVDELKKRYGREMLMTMLNRHAVALEAKAKGIDVTTAEVETEIEVMSRSYGSKERFL 116 Query: 119 XXXXXXLGLSREEVREEAAYRLTLQAIATAGITISESEIDDYLAQNAGRFTPKKEMQLSM 178 LG++ E++ E YRL L+ IAT+ + I E +ID YL Q +F PKK++ LSM Sbjct: 117 SEMEDQLGITESELKTETTYRLLLEKIATSDVHIEEQQIDSYLEQYPDQFRPKKQLNLSM 176 Query: 179 IKVHTYEEAEKVMDRLEQGEDFAALATELSIDEESRLHGGSIGIVEEDDPFWPEDLLQTA 238 I+V + +EAE+VMDRLE GEDFA LA ++S+DE +R GG IG+VEEDDPF P +LL+ A Sbjct: 177 IEVASEDEAERVMDRLENGEDFADLAAQVSLDEYTREDGGQIGLVEEDDPFLPPELLEAA 236 Query: 239 AGLEAGDIAGPLQARDAYAVIRLEKAIVPRKQNQAEIRQQVREELALEKAPPLQQVENEL 298 LE GDIAGP+ D YA++ + I P+ ++ IR+ VR++LALE++ L ++E +L Sbjct: 237 LSLEPGDIAGPISLTDTYAIVYVRDIIEPQAPSEESIRKAVRKQLALEQSVSLTELERQL 296 Query: 299 RAKYDTAI 306 R KY+ I Sbjct: 297 REKYEARI 304 >B1DID8.1 B1DID8_9BACL PpiC-type peptidyl-prolyl cis-trans isomerase Length = 324 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 83/261 (31%), Positives = 148/261 (56%), Gaps = 8/261 (3%) Query: 50 ARAGDQPVTDQQWISELKKKHGDEVLLTLLNHIVVSKEAKALGITVTDKEIEKELQSSIA 109 A G P+T + +LK+++GD VL T++ H + EA+A ++++ +E E+EL S + Sbjct: 66 ATVGGFPITAEDLAEQLKRQYGDNVLRTMMVHKAIDLEAEAQQLSLSSEEEERELTSMMD 125 Query: 110 XXXXXXXXXXXXXXXLGLSREEVREEAAYRLTLQAIATAGITISESEIDDYLAQNAGRFT 169 LG+++ +V E+ YRL L+ IA + +SE EI++Y+A + +F Sbjct: 126 GYDSEEVFYEVMKDQLGMTKSDVEEDVKYRLLLEKIAILTVNLSEVEIENYIAAHPEQFA 185 Query: 170 PKKEMQLSMIKVHTYEEAEKVMDRLEQGEDFAALATELSIDEESRLHGGSIGIVEEDDPF 229 + + + I T +EA+ V+D+L G+ F LA E S D + GG +G+++ DDPF Sbjct: 186 DRLRLHVQWIVTDTEKEADDVLDKLTAGDSFEQLALEYSKDANTSDAGGDLGLIDSDDPF 245 Query: 230 WPEDLLQTAAGLEAGDIAGPLQARDAYAVIRLEKAIVPRKQNQA----EIRQQVREELAL 285 + ++++ A+ L+ G+ GP++ + YAVIR ++ R++ + + R+ELAL Sbjct: 246 YDAEMMEEASRLQTGESTGPIKVPEGYAVIR----VLERQKTEGLSGHVLYDTARKELAL 301 Query: 286 EKAPPLQQVENELRAKYDTAI 306 KA PL ++E+ L KY+ I Sbjct: 302 SKAKPLNEIEDGLLEKYNAEI 322 >Q2B266.1 Q2B266_9BACI YacD Length = 296 Score = 122 bits (307), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 79/282 (28%), Positives = 142/282 (50%), Gaps = 16/282 (5%) Query: 9 LRNAVILLAIATLMLGGLLF---WSLRAMAILKGEAAEGESSDIARAGDQPVTDQQWISE 65 ++ + L IA+L + ++F ++R + G GE+ +A G +T ++W++E Sbjct: 1 MKKKHLWLIIASLFVLNIIFILLLTIRPAVLFAGS---GET--VAEVGKDKITREEWLNE 55 Query: 66 LKKKHGDEVLLTLLNHIVVSKEAKALGITVTDKEIEKELQSSIAXXXXXXXXXXXXXXXL 125 +++++G EVL L++ V+ A+ + V+ +E+EL Sbjct: 56 MEQRYGKEVLNDLIDQKVIGAMAEKYDVEVSKDAVEREL--------TLVKTMYQGNRLQ 107 Query: 126 GLSREEVREEAAYRLTLQAIATAGITISESEIDDYLAQNAGRFTPKKEMQLSMIKVHTYE 185 L + +E+ Y L L+ + T + ++E E+ DY QN F +S I V T + Sbjct: 108 QLDESKWKEQIKYSLLLEELLTRDVVVTEEEMKDYYDQNKSLFQVPDSYHISQIVVKTKK 167 Query: 186 EAEKVMDRLEQGEDFAALATELSIDEESRLHGGSIGIVEEDDPFWPEDLLQTAAGLEAGD 245 EAE+ + LE G F LA E SIDE + GG G + E+D + +D + AA L+ G+ Sbjct: 168 EAEQTIKELENGSSFPVLAMERSIDEFTANQGGETGFISEEDERFSQDFIDEAAKLKEGE 227 Query: 246 IAGPLQARDAYAVIRLEKAIVPRKQNQAEIRQQVREELALEK 287 + P++ D YAVI L + + R +++ Q+R ++ALE+ Sbjct: 228 WSEPVEVEDGYAVILLHEHLDGRNYAFKDVKNQIRRQVALEQ 269 >A3IEB6.1 A3IEB6_9BACI Putative uncharacterized protein Length = 323 Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 75/285 (26%), Positives = 139/285 (48%), Gaps = 9/285 (3%) Query: 6 ERLLRNAVILLAIATLMLGGLLFWSLRAMAILKGEAAEGESSDIARAGDQPVTDQQWISE 65 +R L+ L IA L+LG +L W + A AI G +A +T Q+W+ Sbjct: 22 QRRLKTKPALSVIAVLLLGNIL-WFI-AWAIPNKSQEIGSDEQVAAIDGDVITRQEWMIA 79 Query: 66 LKKKHGDEVLLTLLNHIVVSKEAKALGITVTDKEIEKELQSSIAXXXXXXXXXXXXXXXL 125 +++++G E L L+N V+ K AK I VTD+EI+ EL Sbjct: 80 MEERYGKETLQNLVNESVMEKAAKTYKIKVTDQEIDLEL------ALMRSAQDKFDTAMQ 133 Query: 126 GLSREEVREEAAYRLTLQAIATAGITISESEIDDYLAQNAGRFTPKKEMQLSMIKVHTYE 185 LS E++R++ +L L + T + ISE I+ Y +N G + K + + I+V + Sbjct: 134 NLSAEQLRQKIRSQLILDKVLTKDVVISEESIEKYYEENQGLYNTKTSYRTNFIEVDAKK 193 Query: 186 EAEKVMDRLEQGEDFAALATELSIDEESRLHGGSIGIVEEDDPFWPEDLLQTAAGLEAGD 245 A++ + L+ G DF+ LA E+S+D S GG +G + E+ ++ +A + Sbjct: 194 AADEALGELKNGSDFSVLAREISLDSASASLGGDVGFLTENQENVDPAIINAVKSTKANE 253 Query: 246 IAGPLQARDA-YAVIRLEKAIVPRKQNQAEIRQQVREELALEKAP 289 ++ + + Y ++++++ + + ++++ + ELALE+ P Sbjct: 254 VSKAFKLDNGHYGIVQVQEVLEGQSFTYDDVKEHIERELALEQLP 298 >C0ZIC8.1 C0ZIC8_BREBN Putative uncharacterized protein yacD Length = 300 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 74/261 (28%), Positives = 137/261 (52%), Gaps = 4/261 (1%) Query: 42 AEGESSDIARAGDQPVTDQQWISELKKKHGDEVLLTLLNHIVVSKEAKALGITVTDKEIE 101 A G+ A GD+ +++ ++++ LK+K G +VL ++N VV +EAK GITV K++E Sbjct: 28 ASGKLQPAAIVGDKTISNDEYVTALKQKFGKQVLNDMINREVVFQEAKRSGITVDPKQLE 87 Query: 102 KELQSSIAXXXXXXXXXXXXXXXL---GLSREEVREEAAYRLTLQAIATAGITISESEID 158 +EL S I + G + E +++E +Y++ LQ +AT +TI + E+ Sbjct: 88 QEL-SQIRDSYGSRTDSEFEAALIKQAGTTVEALKQEISYQILLQTLATKDMTIKDEELI 146 Query: 159 DYLAQNAGRFTPKKEMQLSMIKVHTYEEAEKVMDRLEQGEDFAALATELSIDEESRLHGG 218 + + R+T +++L I V + +EAE+V+ L+ G DF +A SID ++ ++GG Sbjct: 147 NVYNSRSDRYTRPMQVRLGQIVVASQKEAEQVLADLKNGADFQTIAKARSIDADTAVNGG 206 Query: 219 SIGIVEEDDPFWPEDLLQTAAGLEAGDIAGPLQARDAYAVIRLEKAIVPRKQNQAEIRQQ 278 +G V D P++ LE + ++ +D Y + +L + ++ E++ + Sbjct: 207 DVGWVSIKDNRLPDEAKPIVEKLEKDKYSEAIKIQDQYVIYQLRERREASQRTFEEVKDE 266 Query: 279 VREELALEKAPPLQQVENELR 299 +R E+A + L V LR Sbjct: 267 LRREMAFAQVESLDVVLERLR 287 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.131 0.351 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,576,140,576 Number of extensions: 59788320 Number of successful extensions: 161959 Number of sequences better than 1.0e-05: 499 Number of HSP's gapped: 162098 Number of HSP's successfully gapped: 499 Length of query: 314 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 179 Effective length of database: 1,788,859,178 Effective search space: 320205792862 Effective search space used: 320205792862 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 131 (55.1 bits)