BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0060.0011.p (294 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K905.1 B3K905_9BACI Hsp33 protein 409 e-112 C3BEI9.1 C3BEI9_9BACI 33 kDa chaperonin 337 1e-90 C3AXZ8.1 C3AXZ8_BACMY 33 kDa chaperonin 337 1e-90 C3AG67.1 C3AG67_BACMY 33 kDa chaperonin 337 1e-90 C3GV43.1 C3GV43_BACTU 33 kDa chaperonin 316 2e-84 >B3K905.1 B3K905_9BACI Hsp33 protein Length = 294 Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust. Identities = 194/294 (65%), Positives = 244/294 (82%) Query: 1 MDNKKDRLVRGTAMNGKVRAFAVRTTALVDELRRRHDTYPTATAALGRTVTAAAMMGAML 60 M N+KDR++RGTA+NGKVRAFAVRTT LV+ELRRRHDT+P TAALGRTV+AAAMMGAML Sbjct: 1 MGNQKDRMLRGTALNGKVRAFAVRTTDLVEELRRRHDTFPVVTAALGRTVSAAAMMGAML 60 Query: 61 KGEEKLAIMVKGNGPLGQITAESNALGEVRGYVQNPHVHLPSNSLGKLDVAGAVGTEGFI 120 KG+E+L+I V+G+GP+G I AESNA GEVRGYV+NPHV L + GK+DVA AVGT G I Sbjct: 61 KGDERLSIQVRGDGPIGLIAAESNAKGEVRGYVKNPHVELTNIRPGKMDVAAAVGTTGQI 120 Query: 121 DISKDLGLKEPYRGSVPIVSGELGEDFTYYFAVSEQTPAAVGLGVLVETDNSVKVAGGFI 180 D+ KD GLKEPYRGSVPI+SGEL EDFTYYFAVSEQT +AV LGVLV D SV AGGFI Sbjct: 121 DVVKDFGLKEPYRGSVPIISGELAEDFTYYFAVSEQTNSAVSLGVLVSPDYSVANAGGFI 180 Query: 181 VQLLPGLSDDEITEIERAVGAMPSVTAGLDQGLEPEEMLRWLLPDVVIMDGLDISFVCQC 240 +QLLPG+SD+EITEIE A+ +P +T L++GL+ E++L+ +LPDV I++ ++ F C C Sbjct: 181 IQLLPGVSDEEITEIELALSKIPPITEMLEEGLDLEDILKRVLPDVTILEETEVYFSCDC 240 Query: 241 SRERVEQTLVSLGQHELERLIEEDDQVEVVCHFCNEAYVFNKDELQVILDQAKS 294 S ERVE+ L+SLG+ ELE++IEED + EV CHFCNE Y F++++L+ +L++A S Sbjct: 241 SHERVERALISLGREELEQMIEEDGKAEVSCHFCNERYTFDREQLKSVLERANS 294 >C3BEI9.1 C3BEI9_9BACI 33 kDa chaperonin Length = 291 Score = 337 bits (863), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 159/288 (55%), Positives = 221/288 (76%), Gaps = 2/288 (0%) Query: 5 KDRLVRGTAMNGKVRAFAVRTTALVDELRRRHDTYPTATAALGRTVTAAAMMGAMLKGEE 64 KD LV+ A +G+VRA++VRTT +V E +RRHDT+ TA+AALGR++TA AMMGAMLKG++ Sbjct: 2 KDYLVKALAFDGEVRAYSVRTTNMVSEAQRRHDTWRTASAALGRSLTAGAMMGAMLKGDQ 61 Query: 65 KLAIMVKGNGPLGQITAESNALGEVRGYVQNPHVHLPSNSLGKLDVAGAVGTEGFIDISK 124 KL I V+GNGPLG I +++A G+VRGYV NPHV + GKL V AVGTEGF+ + K Sbjct: 62 KLTIKVEGNGPLGPILVDAHANGDVRGYVTNPHVDFEATEQGKLRVYQAVGTEGFLTVIK 121 Query: 125 DLGLKEPYRGSVPIVSGELGEDFTYYFAVSEQTPAAVGLGVLVETDNSVKVAGGFIVQLL 184 D+G++EP+ G PIVSGELGEDFTYYFAVSEQTP++VG+GVLV D+S+ AGGFI+Q++ Sbjct: 122 DIGMREPFIGQSPIVSGELGEDFTYYFAVSEQTPSSVGIGVLVNGDDSILAAGGFILQIM 181 Query: 185 PGLSDDEITEIERAVGAMPSVTAGLDQGLEPEEMLRWLL--PDVVIMDGLDISFVCQCSR 242 PG ++ I+ IE + +P V+ ++QGL PEE+L +L V +++ +D+ F C CSR Sbjct: 182 PGAQEETISFIEERLQKIPPVSKLIEQGLSPEELLYEVLGKEKVKVLETMDVQFNCTCSR 241 Query: 243 ERVEQTLVSLGQHELERLIEEDDQVEVVCHFCNEAYVFNKDELQVILD 290 ER+E L+SLG+ ELE++ EE+D+ EV CHFCNE Y F+K+++ +++ Sbjct: 242 ERIESVLISLGKKELEQVREEEDETEVHCHFCNERYNFSKEDITNLIE 289 >C3AXZ8.1 C3AXZ8_BACMY 33 kDa chaperonin Length = 291 Score = 337 bits (863), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 159/288 (55%), Positives = 221/288 (76%), Gaps = 2/288 (0%) Query: 5 KDRLVRGTAMNGKVRAFAVRTTALVDELRRRHDTYPTATAALGRTVTAAAMMGAMLKGEE 64 KD LV+ A +G+VRA++VRTT +V E +RRHDT+ TA+AALGR++TA AMMGAMLKG++ Sbjct: 2 KDYLVKALAFDGEVRAYSVRTTNMVSEAQRRHDTWRTASAALGRSLTAGAMMGAMLKGDQ 61 Query: 65 KLAIMVKGNGPLGQITAESNALGEVRGYVQNPHVHLPSNSLGKLDVAGAVGTEGFIDISK 124 KL I V+GNGPLG I +++A G+VRGYV NPHV + GKL V AVGTEGF+ + K Sbjct: 62 KLTIKVEGNGPLGPILVDAHANGDVRGYVTNPHVDFEATEQGKLRVYQAVGTEGFLTVIK 121 Query: 125 DLGLKEPYRGSVPIVSGELGEDFTYYFAVSEQTPAAVGLGVLVETDNSVKVAGGFIVQLL 184 D+G++EP+ G PIVSGELGEDFTYYFAVSEQTP++VG+GVLV D+S+ AGGFI+Q++ Sbjct: 122 DIGMREPFIGQSPIVSGELGEDFTYYFAVSEQTPSSVGIGVLVNGDDSILAAGGFILQIM 181 Query: 185 PGLSDDEITEIERAVGAMPSVTAGLDQGLEPEEMLRWLL--PDVVIMDGLDISFVCQCSR 242 PG ++ I+ IE + +P V+ ++QGL PEE+L +L V +++ +D+ F C CSR Sbjct: 182 PGAQEETISFIEERLQKIPPVSKLIEQGLSPEELLYEVLGKEKVKVLETMDVQFNCTCSR 241 Query: 243 ERVEQTLVSLGQHELERLIEEDDQVEVVCHFCNEAYVFNKDELQVILD 290 ER+E L+SLG+ ELE++ EE+D+ EV CHFCNE Y F+K+++ +++ Sbjct: 242 ERIESVLISLGKKELEQVREEEDETEVHCHFCNERYNFSKEDITNLIE 289 >C3AG67.1 C3AG67_BACMY 33 kDa chaperonin Length = 291 Score = 337 bits (863), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 159/288 (55%), Positives = 221/288 (76%), Gaps = 2/288 (0%) Query: 5 KDRLVRGTAMNGKVRAFAVRTTALVDELRRRHDTYPTATAALGRTVTAAAMMGAMLKGEE 64 KD LV+ A +G+VRA++VRTT +V E +RRHDT+ TA+AALGR++TA AMMGAMLKG++ Sbjct: 2 KDYLVKALAFDGEVRAYSVRTTNMVSEAQRRHDTWRTASAALGRSLTAGAMMGAMLKGDQ 61 Query: 65 KLAIMVKGNGPLGQITAESNALGEVRGYVQNPHVHLPSNSLGKLDVAGAVGTEGFIDISK 124 KL I V+GNGPLG I +++A G+VRGYV NPHV + GKL V AVGTEGF+ + K Sbjct: 62 KLTIKVEGNGPLGPILVDAHANGDVRGYVTNPHVDFEATEQGKLRVYQAVGTEGFLTVIK 121 Query: 125 DLGLKEPYRGSVPIVSGELGEDFTYYFAVSEQTPAAVGLGVLVETDNSVKVAGGFIVQLL 184 D+G++EP+ G PIVSGELGEDFTYYFAVSEQTP++VG+GVLV D+S+ AGGFI+Q++ Sbjct: 122 DIGMREPFIGQSPIVSGELGEDFTYYFAVSEQTPSSVGIGVLVNGDDSILAAGGFILQIM 181 Query: 185 PGLSDDEITEIERAVGAMPSVTAGLDQGLEPEEMLRWLL--PDVVIMDGLDISFVCQCSR 242 PG ++ I+ IE + +P V+ ++QGL PEE+L +L V +++ +D+ F C CSR Sbjct: 182 PGAQEETISFIEERLQKIPPVSKLIEQGLSPEELLYEVLGKEKVKVLETMDVQFNCTCSR 241 Query: 243 ERVEQTLVSLGQHELERLIEEDDQVEVVCHFCNEAYVFNKDELQVILD 290 ER+E L+SLG+ ELE++ EE+D+ EV CHFCNE Y F+K+++ +++ Sbjct: 242 ERIESVLISLGKKELEQVREEEDETEVHCHFCNERYNFSKEDITNLIE 289 >C3GV43.1 C3GV43_BACTU 33 kDa chaperonin Length = 291 Score = 316 bits (809), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 158/289 (54%), Positives = 219/289 (75%), Gaps = 2/289 (0%) Query: 5 KDRLVRGTAMNGKVRAFAVRTTALVDELRRRHDTYPTATAALGRTVTAAAMMGAMLKGEE 64 KD LV+ A +G+VRA++VRTT V E +RRHDT+ TA+AALGR++TA MMGAMLKGE+ Sbjct: 2 KDYLVKALAFDGEVRAYSVRTTNTVSEAQRRHDTWRTASAALGRSLTAGTMMGAMLKGEQ 61 Query: 65 KLAIMVKGNGPLGQITAESNALGEVRGYVQNPHVHLPSNSLGKLDVAGAVGTEGFIDISK 124 KL I V+GNGP+G I +++A G+VRGYV NPHV GKL V AVGTEGF+ + K Sbjct: 62 KLTIKVEGNGPIGPILVDAHANGDVRGYVTNPHVDFEGTEQGKLRVYQAVGTEGFVTVIK 121 Query: 125 DLGLKEPYRGSVPIVSGELGEDFTYYFAVSEQTPAAVGLGVLVETDNSVKVAGGFIVQLL 184 D+G++EP+ G PIVSGELGEDFTYYFAVSEQTP++VG+GVLV D+S+ AGGFI+Q++ Sbjct: 122 DIGMREPFIGQSPIVSGELGEDFTYYFAVSEQTPSSVGVGVLVNGDDSILAAGGFILQIM 181 Query: 185 PGLSDDEITEIERAVGAMPSVTAGLDQGLEPEEMLRWLLPD--VVIMDGLDISFVCQCSR 242 PG D+ I+ IE + +P V+ ++QGL PEE+L +L + V +++ +D+ F C CSR Sbjct: 182 PGAQDETISFIEDRLQKIPPVSTLIEQGLSPEELLYAVLGEDKVKVLETMDVQFNCTCSR 241 Query: 243 ERVEQTLVSLGQHELERLIEEDDQVEVVCHFCNEAYVFNKDELQVILDQ 291 ER+E L+SLG+ ELE++ EE+++ EV CHFCNE Y F+K+++ +++ Sbjct: 242 ERIESVLISLGKTELEQVREEEEETEVHCHFCNERYKFSKEDITNLIEN 290 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.135 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,735,986,433 Number of extensions: 74707179 Number of successful extensions: 196812 Number of sequences better than 1.0e-05: 1029 Number of HSP's gapped: 195000 Number of HSP's successfully gapped: 1029 Length of query: 294 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 160 Effective length of database: 1,798,280,193 Effective search space: 287724830880 Effective search space used: 287724830880 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)