BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0060.0010.p (255 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0GJ24.1 C0GJ24_9FIRM Putative transcriptional acitvator, Baf fa... 330 6e-89 A7Z0J3.1 COAX_BACA2 Type III pantothenate kinase EC=2.7.1.33 330 6e-89 A6CS80.1 A6CS80_9BACI Putative uncharacterized protein 327 9e-88 A4J5G3.1 A4J5G3_DESRM Pantothenate kinase EC=2.7.1.33 326 1e-87 Q2B264.1 Q2B264_9BACI Putative uncharacterized protein 326 1e-87 >C0GJ24.1 C0GJ24_9FIRM Putative transcriptional acitvator, Baf family Length = 255 Score = 330 bits (847), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 163/256 (63%), Positives = 207/256 (80%), Gaps = 3/256 (1%) Query: 1 MMLAVDIGNTNIVLGVYRGRELLHHFRLSTARQSTADEYGVLIHNLFHMSNISFRDVEGV 60 M+LAVD+GNTNIVLGVY+GR+L +R+ST R T DEYGV++ NLF + + RD+ G+ Sbjct: 1 MLLAVDVGNTNIVLGVYQGRDLKVSWRVSTNRLQTGDEYGVILKNLFVQAGVDDRDLTGM 60 Query: 61 IISSVVPPLVQVIVEMCVKYIGKEPLLVGPGIKTGLNLRYENPREVGADRIVNAVAAIEQ 120 I+SSVVPPL+ + EM +Y G EPL+VGPG+KTGLN+ ENPREVGADRIVNAVAAIE Sbjct: 61 IVSSVVPPLMFSLQEMANRYFGLEPLVVGPGMKTGLNISVENPREVGADRIVNAVAAIEL 120 Query: 121 YQCPLVVVDFGTATTFDCIDAGANYLGGAIVPGLGISTEALYQRASKLPRIELEKPKKVI 180 Y PL++VDFGTATTFD I +YLGGAI PG+ ISTEAL+QRA+KLPR+EL PK+VI Sbjct: 121 YGAPLIIVDFGTATTFDAISEQGHYLGGAIAPGISISTEALFQRAAKLPRVELAVPKRVI 180 Query: 181 GRNTVHAMQAGIIFGYAGQVEGIVRRIKAEM-NAPVLKVIATGGLATLIAGETECIDEVN 239 GR+T+ +MQ+GII+G+ GQV+GIVR++ E P KVIATGGLA LIA E+E ++ +N Sbjct: 181 GRDTITSMQSGIIYGFVGQVDGIVRKMIPEFPTRP--KVIATGGLAELIARESEALEIIN 238 Query: 240 PMLTLEGLRIIYDRNK 255 P+LTLEGLRII++RN+ Sbjct: 239 PLLTLEGLRIIHERNR 254 >A7Z0J3.1 COAX_BACA2 Type III pantothenate kinase EC=2.7.1.33 Length = 258 Score = 330 bits (847), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 156/255 (61%), Positives = 202/255 (79%), Gaps = 1/255 (0%) Query: 1 MMLAVDIGNTNIVLGVYRGRELLHHFRLSTARQSTADEYGVLIHNLFHMSNISFRDVEGV 60 M+L +D+GNTN V+GVY EL +H+R+ T+R T DE+G+L+ +LF S + F +EG+ Sbjct: 1 MLLVIDVGNTNTVIGVYHDGELEYHWRIETSRHKTEDEFGMLLRSLFEHSGLMFEQIEGI 60 Query: 61 IISSVVPPLVQVIVEMCVKYIGKEPLLVGPGIKTGLNLRYENPREVGADRIVNAVAAIEQ 120 IISSVVPP++ + MC KY EP +VGPG+KTGLN++Y+NP+EVGADRIVNAVAAI+Q Sbjct: 61 IISSVVPPIMFSLERMCTKYFHIEPQVVGPGMKTGLNIKYDNPKEVGADRIVNAVAAIQQ 120 Query: 121 YQCPLVVVDFGTATTFDCIDAGANYLGGAIVPGLGISTEALYQRASKLPRIELEKPKKVI 180 Y PL+VVDFGTATT+ ID Y+GGAI PG+ ISTEALY RA+KLPRIE+ +P +I Sbjct: 121 YGAPLIVVDFGTATTYCYIDENKQYMGGAIAPGITISTEALYSRAAKLPRIEIARPDNII 180 Query: 181 GRNTVHAMQAGIIFGYAGQVEGIVRRIKAEMNAPVLKVIATGGLATLIAGETECIDEVNP 240 G+NTV AMQ+GI+FGY GQVEGIV+R+K + KVIATGGLA+LIA E++CID V+P Sbjct: 181 GKNTVSAMQSGILFGYVGQVEGIVKRMKWQATQEP-KVIATGGLASLIANESDCIDIVDP 239 Query: 241 MLTLEGLRIIYDRNK 255 LTL+GL IIY+RN+ Sbjct: 240 FLTLKGLEIIYERNR 254 >A6CS80.1 A6CS80_9BACI Putative uncharacterized protein Length = 259 Score = 327 bits (837), Expect = 9e-88, Method: Compositional matrix adjust. Identities = 156/254 (61%), Positives = 202/254 (79%), Gaps = 1/254 (0%) Query: 1 MMLAVDIGNTNIVLGVYRGRELLHHFRLSTARQSTADEYGVLIHNLFHMSNISFRDVEGV 60 ++ +DIGNTNIVLGVY G EL +H+R+ T R T DEYG+++ NLF +S ++G+ Sbjct: 4 VIFVLDIGNTNIVLGVYEGEELKYHWRMETNRHKTEDEYGMIVKNLFQHVQLSLESIDGI 63 Query: 61 IISSVVPPLVQVIVEMCVKYIGKEPLLVGPGIKTGLNLRYENPREVGADRIVNAVAAIEQ 120 IISSVVPP++ + MCVKY PL+VGPGIKTGLN++YENPREVGADRIVNAVA IEQ Sbjct: 64 IISSVVPPIMFSLERMCVKYFNITPLVVGPGIKTGLNIKYENPREVGADRIVNAVAGIEQ 123 Query: 121 YQCPLVVVDFGTATTFDCIDAGANYLGGAIVPGLGISTEALYQRASKLPRIELEKPKKVI 180 Y PL++VDFGTATT+ I+ Y+GGAI PG+GISTEALY +A+KLPRIE+ +P +I Sbjct: 124 YGGPLIIVDFGTATTYCYINEEKQYMGGAIAPGIGISTEALYSKAAKLPRIEIGRPDHII 183 Query: 181 GRNTVHAMQAGIIFGYAGQVEGIVRRIKAEMNAPVLKVIATGGLATLIAGETECIDEVNP 240 G+NTV AMQ+GI++GY GQVEGIV+R+KA ++ L VIATGGLA LI+ E++ ID V+P Sbjct: 184 GKNTVSAMQSGILYGYVGQVEGIVKRMKATGDSNPL-VIATGGLAQLISKESDVIDVVDP 242 Query: 241 MLTLEGLRIIYDRN 254 LTL+GL++IY+RN Sbjct: 243 FLTLKGLKLIYERN 256 >A4J5G3.1 A4J5G3_DESRM Pantothenate kinase EC=2.7.1.33 Length = 269 Score = 326 bits (836), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 160/255 (62%), Positives = 203/255 (79%), Gaps = 1/255 (0%) Query: 1 MMLAVDIGNTNIVLGVYRGRELLHHFRLSTARQSTADEYGVLIHNLFHMSNISFRDVEGV 60 M+LAVDIGNTNIV GV + L ++RL+T R TADEYGVL+ LF +SNI+ ++V+G+ Sbjct: 1 MILAVDIGNTNIVFGVLDDKSLYANWRLATDRNRTADEYGVLLTELFCLSNINMKEVKGI 60 Query: 61 IISSVVPPLVQVIVEMCVKYIGKEPLLVGPGIKTGLNLRYENPREVGADRIVNAVAAIEQ 120 IISSVVPPL ++ M KY P+ VGPGI++GL+++ +NPREVGADRIVNAVAA Sbjct: 61 IISSVVPPLNPILEFMSEKYFNISPIQVGPGIRSGLHIKMDNPREVGADRIVNAVAAYSL 120 Query: 121 YQCPLVVVDFGTATTFDCIDAGANYLGGAIVPGLGISTEALYQRASKLPRIELEKPKKVI 180 Y PL++VDFGTATTF C+ A YLGGAI PG+GISTEALY +ASKLPR+EL KP +I Sbjct: 121 YGGPLIIVDFGTATTFCCVTAKGEYLGGAIAPGIGISTEALYTKASKLPRVELSKPSSII 180 Query: 181 GRNTVHAMQAGIIFGYAGQVEGIVRRIKAEMNAPVLKVIATGGLATLIAGETECIDEVNP 240 G+NT+ AMQAGII+G+AGQVE IVRR+K EM+ +VIATGGLA +++ ET ID+VNP Sbjct: 181 GKNTITAMQAGIIYGFAGQVEFIVRRMKKEMSTET-QVIATGGLAEVMSQETSVIDKVNP 239 Query: 241 MLTLEGLRIIYDRNK 255 +LTL+GL+IIYDRN+ Sbjct: 240 ILTLQGLKIIYDRNQ 254 >Q2B264.1 Q2B264_9BACI Putative uncharacterized protein Length = 260 Score = 326 bits (836), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 154/255 (60%), Positives = 203/255 (79%), Gaps = 1/255 (0%) Query: 1 MMLAVDIGNTNIVLGVYRGRELLHHFRLSTARQSTADEYGVLIHNLFHMSNISFRDVEGV 60 ++ D+GNTNIVLGVY G EL HH+R+ T R T DEYG+++ +LF N+SF +++G+ Sbjct: 2 LIFVFDVGNTNIVLGVYDGEELKHHWRIETNRNKTEDEYGMIVKSLFEHVNLSFSNIDGI 61 Query: 61 IISSVVPPLVQVIVEMCVKYIGKEPLLVGPGIKTGLNLRYENPREVGADRIVNAVAAIEQ 120 IISSVVPP++ + MC KY +PL+VGPGIKTGLN++YENPREVGADRIVNAVAAI + Sbjct: 62 IISSVVPPIMFALERMCQKYFHHKPLVVGPGIKTGLNIKYENPREVGADRIVNAVAAIHE 121 Query: 121 YQCPLVVVDFGTATTFDCIDAGANYLGGAIVPGLGISTEALYQRASKLPRIELEKPKKVI 180 Y PL++VDFGTATT+ I+A Y+GGAI PG+ ISTEALY +A+KLPRIE+ +P+ ++ Sbjct: 122 YGGPLIIVDFGTATTYCYINADKQYMGGAIAPGVNISTEALYSKAAKLPRIEIARPEHIV 181 Query: 181 GRNTVHAMQAGIIFGYAGQVEGIVRRIKAEMNAPVLKVIATGGLATLIAGETECIDEVNP 240 G+NTV AMQ+GI++GY GQVEGIV+R+K + + L VIATGGLA LIA E+ ID V+P Sbjct: 182 GKNTVAAMQSGIVYGYVGQVEGIVKRMKDQSDENPL-VIATGGLANLIAQESNMIDIVDP 240 Query: 241 MLTLEGLRIIYDRNK 255 LTL+GL++IY RN+ Sbjct: 241 FLTLKGLQLIYKRNR 255 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.141 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,486,359,528 Number of extensions: 60715867 Number of successful extensions: 136473 Number of sequences better than 1.0e-05: 834 Number of HSP's gapped: 135323 Number of HSP's successfully gapped: 835 Length of query: 255 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 122 Effective length of database: 1,807,701,208 Effective search space: 220539547376 Effective search space used: 220539547376 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)