BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0060.0006.p (684 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K8Z9.1 B3K8Z9_9BACI ATP-dependent metalloprotease FtsH EC=3.6.4.3 996 0.0 B1DIF1.1 B1DIF1_9BACL ATP-dependent metalloprotease FtsH EC=3.6.4.3 813 0.0 C0ZHF9.1 C0ZHF9_BREBN Cell division protein FtsH homolog EC=3.4.... 796 0.0 C3J4R1.1 C3J4R1_9BACI ATP-dependent metalloprotease FtsH EC=3.6.4.3 770 0.0 B7YA15.1 B7YA15_9BACI ATP-dependent metalloprotease FtsH EC=3.6.4.3 770 0.0 >B3K8Z9.1 B3K8Z9_9BACI ATP-dependent metalloprotease FtsH EC=3.6.4.3 Length = 689 Score = 996 bits (2575), Expect = 0.0, Method: Compositional matrix adjust. Identities = 519/671 (77%), Positives = 566/671 (84%), Gaps = 9/671 (1%) Query: 1 MNRFIRNSGFYLILFLVVVGIVQFVSNGNESADFPRYDELRQEIKNNNVKSMTIQFEGNA 60 M+RFIRNSGFYLILFLVVVGIVQFV+NG E AD P Y++LRQE+K NN++ MT+QF+G A Sbjct: 1 MSRFIRNSGFYLILFLVVVGIVQFVTNGGEQADAPSYNQLRQEVKANNIEEMTVQFDGYA 60 Query: 61 FAVTGEYKQQPAEAKSKNFSTFVPPTDRALDELIAASDDNGIELTQKKMEGDSIWLTFLS 120 + VTG+Y++ E KS+NFST++P TD A+ EL AASD N ++L+ MEG SIWLT LS Sbjct: 61 YLVTGKYREISEEKKSENFSTYIPATDAAMQELTAASDSNNVKLSVVPMEGQSIWLTLLS 120 Query: 121 SXXXXXXXXXXXXXXXNQAQGGGGKVMNFGKSKARLYNEEKKKISFEDVAGADEEKQELV 180 S NQAQGGGGKVMNFGKSKARLYNEEKK+I+FEDVAGADEEKQELV Sbjct: 121 SFIPLIIMFVLFFFLFNQAQGGGGKVMNFGKSKARLYNEEKKRITFEDVAGADEEKQELV 180 Query: 181 EVVEFLKDPRKFAAVGARIPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMF 240 EVV+FLKDPRKF VGARIPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMF Sbjct: 181 EVVDFLKDPRKFNTVGARIPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMF 240 Query: 241 VGVGASRVRDLFENAKKNAPCIIFIDEIDAVXXXXXXXXXXXHDEREQTLNQLLVEMDGF 300 VGVGASRVRDLFENAKKNAPCIIFIDEIDAV HDEREQTLNQLLVEMDGF Sbjct: 241 VGVGASRVRDLFENAKKNAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGF 300 Query: 301 GGNEGIIIVAATNRADILDPALLRPGRFDRQITVDRPDVKGREAVLKVHSRNKPLTKDVR 360 G NEGIIIVAATNR DILDPALLRPGRFDRQITVDRPDVKGREAVLKVH+RNKPLTKDV+ Sbjct: 301 GANEGIIIVAATNRPDILDPALLRPGRFDRQITVDRPDVKGREAVLKVHARNKPLTKDVK 360 Query: 361 LDVIAKRTTGFTGADXXXXXXXXXXXXXXXXXKDISMTEVDEAIDRVIVGTEKRSRVISE 420 LD+IAKRTTGFTGAD KDISM EVDEAIDRVIVGTEKRSRVIS+ Sbjct: 361 LDIIAKRTTGFTGADLENLLNEAALLAARRNRKDISMREVDEAIDRVIVGTEKRSRVISD 420 Query: 421 REKRIVAYHEAGHTIVGYFLEHADMVHKVTIIPRGRAGGYVIMLPKEDRMLVTKQELLDK 480 REKRIVAYHEAGHTIVGYFLEHAD VHKVTIIPRGRAGGYVIM+PKEDRMLVTKQELLD+ Sbjct: 421 REKRIVAYHEAGHTIVGYFLEHADTVHKVTIIPRGRAGGYVIMMPKEDRMLVTKQELLDR 480 Query: 481 VTGLLGGRVAEELFIGEIGTGAYSDFQQATRIVRSMIMEYGMSDKLGPMQFGTSQGQVFL 540 VTGLLGGRVAEELFIGEIGTGAYSDFQQAT I+RSMI+EYGMS+KLGPMQFGTSQGQVFL Sbjct: 481 VTGLLGGRVAEELFIGEIGTGAYSDFQQATGIIRSMIVEYGMSEKLGPMQFGTSQGQVFL 540 Query: 541 GRDIGHEQNYSDSIAYEIDQEMQNFIRSSYERCKELLTKYSKEMHLIANTLLEKETLELD 600 GRDIGHEQNYSD+IAYEIDQEMQ FI YE+C+ELLTK+SKE+HLIANTLLEKETLEL+ Sbjct: 541 GRDIGHEQNYSDAIAYEIDQEMQRFINECYEKCRELLTKHSKEVHLIANTLLEKETLELE 600 Query: 601 QIKELIEQGYLTEDGKPEDAAGVTHEEGEPVIDSIGDVRVRIQGKTDDTPSTIGDLSKDI 660 QIK LIE G + +G + E GEP+ID+IGDV+VRIQGK D T +++I Sbjct: 601 QIKNLIETG--SAEGDGSGEGEGSSENGEPIIDNIGDVKVRIQGKEDGGQPT---STEEI 655 Query: 661 PNNP----DPA 667 PNNP DPA Sbjct: 656 PNNPMDSNDPA 666 >B1DIF1.1 B1DIF1_9BACL ATP-dependent metalloprotease FtsH EC=3.6.4.3 Length = 552 Score = 813 bits (2101), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/538 (76%), Positives = 451/538 (83%), Gaps = 4/538 (0%) Query: 1 MNRFIRNSGFYLILFLVVVGIVQFVSNGNESADFPRYDELRQEIKNNNVKSMTIQFEGNA 60 MNR IRN+GFYLI+FLV VGI+QF+S+ N + RYD+LRQ I +NNV+ ++++++G Sbjct: 1 MNRIIRNTGFYLIIFLVTVGIIQFISSQNNTTVGIRYDQLRQAISSNNVEELSVKYDGYT 60 Query: 61 FAVTGEYKQQPAEAKS--KNFSTFVPPTDRALDELIAASDDNGIELTQKKMEGDSIWLTF 118 + V+G+YK+ PA++K+ KNFS+ + A +++ A G +L K M+ SIWLTF Sbjct: 61 YLVSGKYKEPPADSKNGEKNFSSRIGL--EAGQDILDAEKQYGFKLNYKPMDTPSIWLTF 118 Query: 119 LSSXXXXXXXXXXXXXXXNQAQGGGGKVMNFGKSKARLYNEEKKKISFEDVAGADEEKQE 178 L+S NQAQGGGGKVMNFGKS+ARLYNEEKK+I+FEDVAGADEEKQE Sbjct: 119 LTSIIPFVIIFILFFFLMNQAQGGGGKVMNFGKSRARLYNEEKKRITFEDVAGADEEKQE 178 Query: 179 LVEVVEFLKDPRKFAAVGARIPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVE 238 LVEVV+FLKDPRKF VGARIPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVE Sbjct: 179 LVEVVDFLKDPRKFNLVGARIPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVE 238 Query: 239 MFVGVGASRVRDLFENAKKNAPCIIFIDEIDAVXXXXXXXXXXXHDEREQTLNQLLVEMD 298 MFVGVGASRVRDLFENAKKNAPCIIFIDEIDAV HDEREQTLNQLLVEMD Sbjct: 239 MFVGVGASRVRDLFENAKKNAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMD 298 Query: 299 GFGGNEGIIIVAATNRADILDPALLRPGRFDRQITVDRPDVKGREAVLKVHSRNKPLTKD 358 GFG NEGIIIVAATNR DILDPALLRPGRFDRQITVDRPDVKGREAVLKVH+RNKPL KD Sbjct: 299 GFGANEGIIIVAATNRPDILDPALLRPGRFDRQITVDRPDVKGREAVLKVHARNKPLNKD 358 Query: 359 VRLDVIAKRTTGFTGADXXXXXXXXXXXXXXXXXKDISMTEVDEAIDRVIVGTEKRSRVI 418 V+LDVIAKRTTGFTGAD KDI+M EVDEAIDRVIVGTEK+SRVI Sbjct: 359 VKLDVIAKRTTGFTGADLENLLNEAALLAARRNKKDIAMQEVDEAIDRVIVGTEKKSRVI 418 Query: 419 SEREKRIVAYHEAGHTIVGYFLEHADMVHKVTIIPRGRAGGYVIMLPKEDRMLVTKQELL 478 S+REKRIVAYHEAGHTIVGYFLEHADMVHKVTIIPRGRAGGYVIMLPKEDRMLVTKQELL Sbjct: 419 SDREKRIVAYHEAGHTIVGYFLEHADMVHKVTIIPRGRAGGYVIMLPKEDRMLVTKQELL 478 Query: 479 DKVTGLLGGRVAEELFIGEIGTGAYSDFQQATRIVRSMIMEYGMSDKLGPMQFGTSQG 536 DKVTGLLGGRVAEELFIGEIGTGAYSDF+QAT IVRSMIMEYGMSDKLGPMQFG SQG Sbjct: 479 DKVTGLLGGRVAEELFIGEIGTGAYSDFKQATGIVRSMIMEYGMSDKLGPMQFGQSQG 536 >C0ZHF9.1 C0ZHF9_BREBN Cell division protein FtsH homolog EC=3.4.24.- Length = 648 Score = 796 bits (2057), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/618 (65%), Positives = 476/618 (77%), Gaps = 7/618 (1%) Query: 1 MNRFIRNSGFYLILFLVVVGIVQFVSNGNESADFPRYDELRQEIKNNNVKSMTIQFEGNA 60 MNRF RN+GFYL++FLV VGIV F+ +G + Y E R ++K +NV ++I+ E Sbjct: 1 MNRFFRNTGFYLLIFLVTVGIVNFILSGTDKVGKLTYQEFRVQLKADNVTDLSIRPENGT 60 Query: 61 FAVTGEY-KQQPAEAKSKNFST-FVPPTD--RALDELIAASDDNGIELTQKKMEGDSIWL 116 + V G K P + +K F+ F+ +D + ++E I A + + EG+SIWL Sbjct: 61 YRVEGTLAKAIPGQESNKFFTNVFLYDSDIIKLVEEKIDAQKMKNVVVN--PAEGNSIWL 118 Query: 117 TFLSSXXXXXXXXXXXXXXXNQAQGGGGKVMNFGKSKARLYNEEKKKISFEDVAGADEEK 176 TFL+S N AQGGG +VMNFGKS+A+LYNEEKK+++F+DVAGADEEK Sbjct: 119 TFLTSIIPFVIIFILFFFLLNNAQGGGSRVMNFGKSRAKLYNEEKKRVTFDDVAGADEEK 178 Query: 177 QELVEVVEFLKDPRKFAAVGARIPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDF 236 EL EVV+FLKD RKF AVGARIPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDF Sbjct: 179 AELEEVVDFLKDNRKFNAVGARIPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDF 238 Query: 237 VEMFVGVGASRVRDLFENAKKNAPCIIFIDEIDAVXXXXXXXXXXXHDEREQTLNQLLVE 296 VEMFVGVGASRVRDLFENAKKNAPCIIFIDEIDAV HDEREQTLNQLLVE Sbjct: 239 VEMFVGVGASRVRDLFENAKKNAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVE 298 Query: 297 MDGFGGNEGIIIVAATNRADILDPALLRPGRFDRQITVDRPDVKGREAVLKVHSRNKPLT 356 MDGFGGNEGII++AATNR DILDPALLRPGRFDRQITVDRPD+KGREAVLKVH+RNKP+ Sbjct: 299 MDGFGGNEGIIMIAATNRPDILDPALLRPGRFDRQITVDRPDIKGREAVLKVHARNKPIG 358 Query: 357 KDVRLDVIAKRTTGFTGADXXXXXXXXXXXXXXXXXKDISMTEVDEAIDRVIVGTEKRSR 416 +DV+L+VIA+ T+GFTGAD K I+MTEVDEAIDRVI G K+SR Sbjct: 359 EDVKLEVIARGTSGFTGADLENLLNEAALLTARRNKKQITMTEVDEAIDRVIAGPAKKSR 418 Query: 417 VISEREKRIVAYHEAGHTIVGYFLEHADMVHKVTIIPRGRAGGYVIMLPKEDRMLVTKQE 476 V+SE E+R+VA+HEAGHTI+GY L +A+MVHKVTIIPRG+AGGY +MLPKEDR TK + Sbjct: 419 VVSEDERRLVAFHEAGHTIIGYHLRNAEMVHKVTIIPRGQAGGYTVMLPKEDRFFATKTD 478 Query: 477 LLDKVTGLLGGRVAEELFIGEIGTGAYSDFQQATRIVRSMIMEYGMSDKLGPMQFGTSQG 536 LLDK+ GLLGGRVAEEL +G+I TGA++DFQ+AT I RSMI EYGMS KLGPMQFG SQG Sbjct: 479 LLDKIVGLLGGRVAEELVLGDISTGAHNDFQRATAIARSMITEYGMS-KLGPMQFGKSQG 537 Query: 537 QVFLGRDIGHEQNYSDSIAYEIDQEMQNFIRSSYERCKELLTKYSKEMHLIANTLLEKET 596 QVFLGRD G+E+NYSD IAYEIDQEMQ+ I Y +C ELLTK+ ++ LIANTLL ET Sbjct: 538 QVFLGRDYGNERNYSDKIAYEIDQEMQSIINECYAKCTELLTKHRDQLDLIANTLLRVET 597 Query: 597 LELDQIKELIEQGYLTED 614 L+ +QIK+LIE G + D Sbjct: 598 LDAEQIKQLIETGKMDND 615 >C3J4R1.1 C3J4R1_9BACI ATP-dependent metalloprotease FtsH EC=3.6.4.3 Length = 632 Score = 770 bits (1988), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/645 (60%), Positives = 474/645 (73%), Gaps = 15/645 (2%) Query: 1 MNRFIRNSGFYLILFLVVVGIVQFVSNGNESADFPRYDELRQEIKNNNVKSMTIQFEGNA 60 MNR RN+ FYL++FLVV+G+V F + N+ + YD ++N +VKS +I+ E Sbjct: 1 MNRIFRNTIFYLLIFLVVIGVVSFFNGTNQRTEPMTYDAFITHLENGDVKSFSIKPERGV 60 Query: 61 FAVTGEYKQQPAEAKSKNFSTFVPPTDRALDELIAASDDNGIELTQKKMEGDSIWLTFLS 120 + + G+ K ++ + FST+V +D+ LD + AA+ +E+ + S W+TF + Sbjct: 61 YEIKGQLKTY---SEGQYFSTYVMNSDKVLDRIDAAAARTRVEVV--PADETSGWVTFFT 115 Query: 121 SXXXXXXXXXXXXXXXNQAQGGGGKVMNFGKSKARLYNEEKKKISFEDVAGADEEKQELV 180 S NQAQGGG +VMNFGKS+ARLY ++K+K+ F DVAGADEEK+ELV Sbjct: 116 SIIPFVIIFILFFFLLNQAQGGGSRVMNFGKSRARLYTDDKRKVRFRDVAGADEEKEELV 175 Query: 181 EVVEFLKDPRKFAAVGARIPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMF 240 E+VEFLKDPRKFA +GARIPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMF Sbjct: 176 EIVEFLKDPRKFAELGARIPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMF 235 Query: 241 VGVGASRVRDLFENAKKNAPCIIFIDEIDAVXXXXXXXXXXXHDEREQTLNQLLVEMDGF 300 VGVGASRVRDLFE AKKNAPCIIFIDEIDAV HDEREQTLNQLLVEMDGF Sbjct: 236 VGVGASRVRDLFETAKKNAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGF 295 Query: 301 GGNEGIIIVAATNRADILDPALLRPGRFDRQITVDRPDVKGREAVLKVHSRNKPLTKDVR 360 GNEGIII+AATNR DILDPALLRPGRFDRQITVDRPDVKGREAVL+VH+RNKPL + V Sbjct: 296 NGNEGIIIIAATNRPDILDPALLRPGRFDRQITVDRPDVKGREAVLRVHARNKPLDESVD 355 Query: 361 LDVIAKRTTGFTGADXXXXXXXXXXXXXXXXXKDISMTEVDEAIDRVIVGTEKRSRVISE 420 L IA RT GF+GAD K I M+++DEA DRVI G K+SRVISE Sbjct: 356 LKTIAMRTPGFSGADLENLLNEAALVAARRNKKKIDMSDIDEATDRVIAGPAKKSRVISE 415 Query: 421 REKRIVAYHEAGHTIVGYFLEHADMVHKVTIIPRGRAGGYVIMLPKEDRMLVTKQELLDK 480 +E+RIVA+HEAGHT++G L A+MVHKVTI+PRG+AGGY +MLPKEDR +TK EL+DK Sbjct: 416 KERRIVAFHEAGHTVIGMVLADAEMVHKVTIVPRGQAGGYAVMLPKEDRYFMTKAELMDK 475 Query: 481 VTGLLGGRVAEELFIGEIGTGAYSDFQQATRIVRSMIMEYGMSDKLGPMQFGTSQGQVFL 540 +TGLLGGRVAEE+ E+ TGA++DFQ+AT I R M+ E+GMS+KLGP+QFG GQVFL Sbjct: 476 ITGLLGGRVAEEIVFNEVSTGAHNDFQRATNIARRMVTEFGMSEKLGPLQFGQPSGQVFL 535 Query: 541 GRDIGHEQNYSDSIAYEIDQEMQNFIRSSYERCKELLTKYSKEMHLIANTLLEKETLELD 600 GRD+ +EQNYSD IAYEID E+Q I+ YE+ K++LT++ ++ LIANTLLE ETL+ + Sbjct: 536 GRDLHNEQNYSDKIAYEIDLEIQRIIKECYEKAKQILTQHRDKLDLIANTLLEVETLDAE 595 Query: 601 QIKELIEQGYLTEDGKPEDAAGVTHEEGEPVIDSIGDVRVRIQGK 645 QIK L E G L +D + AG S GDV++ IQ K Sbjct: 596 QIKHLFEHGTLPKDRNGREEAG----------KSDGDVKINIQKK 630 >B7YA15.1 B7YA15_9BACI ATP-dependent metalloprotease FtsH EC=3.6.4.3 Length = 632 Score = 770 bits (1988), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/645 (60%), Positives = 474/645 (73%), Gaps = 15/645 (2%) Query: 1 MNRFIRNSGFYLILFLVVVGIVQFVSNGNESADFPRYDELRQEIKNNNVKSMTIQFEGNA 60 MNR RN+ FYL++FLVV+G+V F + N+ + YD ++N +VKS +I+ E Sbjct: 1 MNRIFRNTIFYLLIFLVVIGVVSFFNGTNQRTEPMTYDAFITHLENGDVKSFSIKPERGV 60 Query: 61 FAVTGEYKQQPAEAKSKNFSTFVPPTDRALDELIAASDDNGIELTQKKMEGDSIWLTFLS 120 + + G+ K ++ + FST+V +D+ LD + AA+ +E+ + S W+TF + Sbjct: 61 YEIKGQLKTY---SEGQYFSTYVMNSDKVLDRIDAAAARTRVEVV--PADETSGWVTFFT 115 Query: 121 SXXXXXXXXXXXXXXXNQAQGGGGKVMNFGKSKARLYNEEKKKISFEDVAGADEEKQELV 180 S NQAQGGG +VMNFGKS+ARLY ++K+K+ F DVAGADEEK+ELV Sbjct: 116 SIIPFVIIFILFFFLLNQAQGGGSRVMNFGKSRARLYTDDKRKVRFRDVAGADEEKEELV 175 Query: 181 EVVEFLKDPRKFAAVGARIPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMF 240 E+VEFLKDPRKFA +GARIPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMF Sbjct: 176 EIVEFLKDPRKFAELGARIPKGVLLVGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMF 235 Query: 241 VGVGASRVRDLFENAKKNAPCIIFIDEIDAVXXXXXXXXXXXHDEREQTLNQLLVEMDGF 300 VGVGASRVRDLFE AKKNAPCIIFIDEIDAV HDEREQTLNQLLVEMDGF Sbjct: 236 VGVGASRVRDLFETAKKNAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQLLVEMDGF 295 Query: 301 GGNEGIIIVAATNRADILDPALLRPGRFDRQITVDRPDVKGREAVLKVHSRNKPLTKDVR 360 GNEGIII+AATNR DILDPALLRPGRFDRQITVDRPDVKGREAVL+VH+RNKPL + V Sbjct: 296 NGNEGIIIIAATNRPDILDPALLRPGRFDRQITVDRPDVKGREAVLRVHARNKPLDESVD 355 Query: 361 LDVIAKRTTGFTGADXXXXXXXXXXXXXXXXXKDISMTEVDEAIDRVIVGTEKRSRVISE 420 L IA RT GF+GAD K I M+++DEA DRVI G K+SRVISE Sbjct: 356 LKTIAMRTPGFSGADLENLLNEAALVAARRNKKKIDMSDIDEATDRVIAGPAKKSRVISE 415 Query: 421 REKRIVAYHEAGHTIVGYFLEHADMVHKVTIIPRGRAGGYVIMLPKEDRMLVTKQELLDK 480 +E+RIVA+HEAGHT++G L A+MVHKVTI+PRG+AGGY +MLPKEDR +TK EL+DK Sbjct: 416 KERRIVAFHEAGHTVIGMVLADAEMVHKVTIVPRGQAGGYAVMLPKEDRYFMTKAELMDK 475 Query: 481 VTGLLGGRVAEELFIGEIGTGAYSDFQQATRIVRSMIMEYGMSDKLGPMQFGTSQGQVFL 540 +TGLLGGRVAEE+ E+ TGA++DFQ+AT I R M+ E+GMS+KLGP+QFG GQVFL Sbjct: 476 ITGLLGGRVAEEIVFNEVSTGAHNDFQRATNIARRMVTEFGMSEKLGPLQFGQPSGQVFL 535 Query: 541 GRDIGHEQNYSDSIAYEIDQEMQNFIRSSYERCKELLTKYSKEMHLIANTLLEKETLELD 600 GRD+ +EQNYSD IAYEID E+Q I+ YE+ K++LT++ ++ LIANTLLE ETL+ + Sbjct: 536 GRDLHNEQNYSDKIAYEIDLEIQRIIKECYEKAKQILTQHRDKLDLIANTLLEVETLDAE 595 Query: 601 QIKELIEQGYLTEDGKPEDAAGVTHEEGEPVIDSIGDVRVRIQGK 645 QIK L E G L +D + AG S GDV++ IQ K Sbjct: 596 QIKHLFEHGTLPKDRNGREEAG----------KSDGDVKINIQKK 630 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.137 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,732,864,395 Number of extensions: 156496259 Number of successful extensions: 614795 Number of sequences better than 1.0e-05: 7703 Number of HSP's gapped: 599794 Number of HSP's successfully gapped: 8501 Length of query: 684 Length of database: 3,060,696,203 Length adjustment: 143 Effective length of query: 541 Effective length of database: 1,713,491,058 Effective search space: 926998662378 Effective search space used: 926998662378 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 135 (56.6 bits)