BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0060.0005.p (179 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K8Z8.1 B3K8Z8_9BACI Hypoxanthine phosphoribosyltransferase EC=... 272 9e-72 B1DIF2.1 B1DIF2_9BACL Hypoxanthine phosphoribosyltransferase EC=... 257 3e-67 C1KYF2.1 C1KYF2_LISMC Putative uncharacterized protein 228 2e-58 Q4ENP3.1 Q4ENP3_LISMO Putative uncharacterized protein 228 2e-58 Q4EHG1.1 Q4EHG1_LISMO Putative uncharacterized protein 228 2e-58 >B3K8Z8.1 B3K8Z8_9BACI Hypoxanthine phosphoribosyltransferase EC=2.4.2.8 Length = 179 Score = 272 bits (696), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 134/178 (75%), Positives = 148/178 (83%) Query: 1 LQNDXXXXXXXXXXXXXXXXXXGAQLSTEYAGRTPLVICVLKGAFIFMADLVKVITVPVE 60 +QND G++LS EY GR PLVICVLKGAFIFMADLVK I+VP+E Sbjct: 1 MQNDIQEILISEEEIRAKIKELGSKLSAEYEGRNPLVICVLKGAFIFMADLVKSISVPLE 60 Query: 61 MDFMAVSSYGASTKSSGVVKIIKDLDASVEGRDVLIVEDIIDSGLTLSYLIEMLQGRNAA 120 +DFMAVSSYGASTKSSGVVKIIKDLDASVEGRDVLIVEDIIDSGLTLS+LIE+L+ R A Sbjct: 61 LDFMAVSSYGASTKSSGVVKIIKDLDASVEGRDVLIVEDIIDSGLTLSHLIELLKSRKAN 120 Query: 121 SVTVVTLFDKPAGRTVNLEAAYTGFVIPDEFVVGYGLDYAEQYRNLPYVGVLKPEIYS 178 SV VVTLFDKPA RTV+L+A YTGFV+PD FVVGYGLDYAE YRNLPY+G+LKPEIYS Sbjct: 121 SVRVVTLFDKPARRTVDLQADYTGFVLPDAFVVGYGLDYAEHYRNLPYIGILKPEIYS 178 >B1DIF2.1 B1DIF2_9BACL Hypoxanthine phosphoribosyltransferase EC=2.4.2.8 Length = 179 Score = 257 bits (656), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 124/157 (78%), Positives = 142/157 (90%) Query: 23 GAQLSTEYAGRTPLVICVLKGAFIFMADLVKVITVPVEMDFMAVSSYGASTKSSGVVKII 82 G LS ++ GR PLVICVLKGAFIFM+DLVK + + +E+DFMAVSSYGASTKSSGVVKII Sbjct: 23 GETLSRDFDGRNPLVICVLKGAFIFMSDLVKEMPIKLEIDFMAVSSYGASTKSSGVVKII 82 Query: 83 KDLDASVEGRDVLIVEDIIDSGLTLSYLIEMLQGRNAASVTVVTLFDKPAGRTVNLEAAY 142 KDLDASVEGRDVLIVEDIIDSGLTLSYLI++L+ RNA SVTV TLFDKPA R+V+LEA Y Sbjct: 83 KDLDASVEGRDVLIVEDIIDSGLTLSYLIDVLERRNAKSVTVATLFDKPARRSVDLEADY 142 Query: 143 TGFVIPDEFVVGYGLDYAEQYRNLPYVGVLKPEIYSK 179 TGF +PDEFVVGYGLDYAE+YRNLP++G+LKPE+Y K Sbjct: 143 TGFSLPDEFVVGYGLDYAEKYRNLPFIGILKPEVYEK 179 >C1KYF2.1 C1KYF2_LISMC Putative uncharacterized protein Length = 648 Score = 228 bits (580), Expect = 2e-58, Method: Composition-based stats. Identities = 109/157 (69%), Positives = 131/157 (83%) Query: 23 GAQLSTEYAGRTPLVICVLKGAFIFMADLVKVITVPVEMDFMAVSSYGASTKSSGVVKII 82 G +L+TEY GR PLV+ VLKGA FM DL+K + +EMDFM VSSYG T SSG VKII Sbjct: 492 GRELTTEYEGRNPLVVGVLKGATPFMTDLLKRVDTYLEMDFMDVSSYGNGTVSSGEVKII 551 Query: 83 KDLDASVEGRDVLIVEDIIDSGLTLSYLIEMLQGRNAASVTVVTLFDKPAGRTVNLEAAY 142 KDL+ASVEGRDVL++EDIIDSG TLSYL+++++ R A SV +VTL DKPAGR V +EA Y Sbjct: 552 KDLNASVEGRDVLVIEDIIDSGRTLSYLVDLIKYRKAKSVKLVTLLDKPAGRNVEIEADY 611 Query: 143 TGFVIPDEFVVGYGLDYAEQYRNLPYVGVLKPEIYSK 179 GFV+P+EFVVGYGLDYAE+YRNLPY+G+LKPEIYS+ Sbjct: 612 VGFVVPNEFVVGYGLDYAERYRNLPYIGILKPEIYSE 648 >Q4ENP3.1 Q4ENP3_LISMO Putative uncharacterized protein Length = 648 Score = 228 bits (580), Expect = 2e-58, Method: Composition-based stats. Identities = 109/157 (69%), Positives = 131/157 (83%) Query: 23 GAQLSTEYAGRTPLVICVLKGAFIFMADLVKVITVPVEMDFMAVSSYGASTKSSGVVKII 82 G +L+TEY GR PLV+ VLKGA FM DL+K + +EMDFM VSSYG T SSG VKII Sbjct: 492 GRELTTEYEGRNPLVVGVLKGATPFMTDLLKRVDTYLEMDFMDVSSYGNGTVSSGEVKII 551 Query: 83 KDLDASVEGRDVLIVEDIIDSGLTLSYLIEMLQGRNAASVTVVTLFDKPAGRTVNLEAAY 142 KDL+ASVEGRDVL++EDIIDSG TLSYL+++++ R A SV +VTL DKPAGR V +EA Y Sbjct: 552 KDLNASVEGRDVLVIEDIIDSGRTLSYLVDLIKYRKAKSVKLVTLLDKPAGRNVEIEADY 611 Query: 143 TGFVIPDEFVVGYGLDYAEQYRNLPYVGVLKPEIYSK 179 GFV+P+EFVVGYGLDYAE+YRNLPY+G+LKPEIYS+ Sbjct: 612 VGFVVPNEFVVGYGLDYAERYRNLPYIGILKPEIYSE 648 >Q4EHG1.1 Q4EHG1_LISMO Putative uncharacterized protein Length = 648 Score = 228 bits (580), Expect = 2e-58, Method: Composition-based stats. Identities = 109/157 (69%), Positives = 131/157 (83%) Query: 23 GAQLSTEYAGRTPLVICVLKGAFIFMADLVKVITVPVEMDFMAVSSYGASTKSSGVVKII 82 G +L+TEY GR PLV+ VLKGA FM DL+K + +EMDFM VSSYG T SSG VKII Sbjct: 492 GRELTTEYEGRNPLVVGVLKGATPFMTDLLKRVDTYLEMDFMDVSSYGNGTVSSGEVKII 551 Query: 83 KDLDASVEGRDVLIVEDIIDSGLTLSYLIEMLQGRNAASVTVVTLFDKPAGRTVNLEAAY 142 KDL+ASVEGRDVL++EDIIDSG TLSYL+++++ R A SV +VTL DKPAGR V +EA Y Sbjct: 552 KDLNASVEGRDVLVIEDIIDSGRTLSYLVDLIKYRKAKSVKLVTLLDKPAGRNVEIEADY 611 Query: 143 TGFVIPDEFVVGYGLDYAEQYRNLPYVGVLKPEIYSK 179 GFV+P+EFVVGYGLDYAE+YRNLPY+G+LKPEIYS+ Sbjct: 612 VGFVVPNEFVVGYGLDYAERYRNLPYIGILKPEIYSE 648 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.138 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 897,178,136 Number of extensions: 34328460 Number of successful extensions: 92771 Number of sequences better than 1.0e-05: 1548 Number of HSP's gapped: 92154 Number of HSP's successfully gapped: 1548 Length of query: 179 Length of database: 3,060,696,203 Length adjustment: 127 Effective length of query: 52 Effective length of database: 1,864,227,298 Effective search space: 96939819496 Effective search space used: 96939819496 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)