BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0060.0002.p (248 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K8Z5.1 B3K8Z5_9BACI Putative uncharacterized protein 311 3e-83 B1DIF5.1 B1DIF5_9BACL Putative uncharacterized protein 272 2e-71 C0ZHF3.1 C0ZHF3_BREBN Putative uncharacterized protein yabS 199 2e-49 A4IJE1.1 A4IJE1_GEOTN Putative uncharacterized protein 190 9e-47 B4BS34.1 B4BS34_9BACI Putative uncharacterized protein 190 9e-47 >B3K8Z5.1 B3K8Z5_9BACI Putative uncharacterized protein Length = 246 Score = 311 bits (797), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 155/248 (62%), Positives = 190/248 (76%), Gaps = 2/248 (0%) Query: 1 MKQILLITDGCSNVGESPVMAAAHARQEGITVNVVGVVDYGTIGEMGSREIADIAKAGGG 60 MKQILLITDGCSNVG SPV+AAAHA Q+GI VNVVGV+DYGTIGE+G EI +IAKAGGG Sbjct: 1 MKQILLITDGCSNVGASPVLAAAHALQDGIVVNVVGVLDYGTIGELGGLEIQEIAKAGGG 60 Query: 61 LSRIVGTPQLAQTIQMMTRKTVVQTIQQAVNKEVKKIXXXXXXXXXXXXQRSQXXXXXXX 120 + RIVGTPQLAQT+QMMTRKTVVQTIQQAVNKE++ I +RSQ Sbjct: 61 IHRIVGTPQLAQTMQMMTRKTVVQTIQQAVNKEIQHILGGGTLEELPPDKRSQVVEVVDE 120 Query: 121 XXXXXPLRIALLIDASASMKPKLGAVEDAIRDLALSLEAREGKSEIAVFHFPGRSSSEEA 180 L++ALLIDASASMKPKL AVE+AIRDL LSL+AR G SE++VFHFPG+ S E+ Sbjct: 121 LAETSSLQVALLIDASASMKPKLAAVEEAIRDLMLSLKARAGSSELSVFHFPGKHSGEDI 180 Query: 181 MLDMDWTHNVSEVRSLFSKLKMRGATPTGPAIFKVLEHYRYDTLDEHRERPTDGGYDEKE 240 ++D+DWT ++ R +FS+L+M+GATPTGPA+ KV+E YRY TL+ ++ G ++E Sbjct: 181 VMDVDWTSDLDGARGMFSRLQMKGATPTGPALLKVIEFYRYGTLEGNQSW--QGRSSQEE 238 Query: 241 GMIGGYVV 248 GM+G YVV Sbjct: 239 GMLGDYVV 246 >B1DIF5.1 B1DIF5_9BACL Putative uncharacterized protein Length = 242 Score = 272 bits (696), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 137/248 (55%), Positives = 173/248 (69%), Gaps = 6/248 (2%) Query: 1 MKQILLITDGCSNVGESPVMAAAHARQEGITVNVVGVVDYGTIGEMGSREIADIAKAGGG 60 MKQILL+TDGCSNVG SPV+AAAHA+ EGI VNVVG++DYG +GE+G+ EI +IA+AGGG Sbjct: 1 MKQILLVTDGCSNVGMSPVVAAAHAKAEGIAVNVVGILDYGDVGELGASEIEEIARAGGG 60 Query: 61 LSRIVGTPQLAQTIQMMTRKTVVQTIQQAVNKEVKKIXXXXXXXXXXXXQRSQXXXXXXX 120 LSR+V QL+QT+QMMTRKT VQTIQ AV KE+K++ +RS+ Sbjct: 61 LSRLVNMRQLSQTVQMMTRKTAVQTIQLAVQKELKQVLGNGSIEALPPEKRSEVVRVIDE 120 Query: 121 XXXXXPLRIALLIDASASMKPKLGAVEDAIRDLALSLEAREGKSEIAVFHFPGRSSSEEA 180 L++ALLIDASASMKPKL AVE+AI DL LSL+AR+GKSEIAVFHFP E+ Sbjct: 121 LGETSKLQVALLIDASASMKPKLRAVEEAIHDLMLSLQARQGKSEIAVFHFPSSKHGEDC 180 Query: 181 MLDMDWTHNVSEVRSLFSKLKMRGATPTGPAIFKVLEHYRYDTLDEHRERPTDGGYDEKE 240 LD+DWT N+ + S+F+K M G TPTGPA+ +V++ YR + DE + Sbjct: 181 KLDLDWTDNLKGISSIFTKFPMSGTTPTGPAMMQVIDFYRQGDYGKKSRN------DETD 234 Query: 241 GMIGGYVV 248 GM+ YVV Sbjct: 235 GMMSDYVV 242 >C0ZHF3.1 C0ZHF3_BREBN Putative uncharacterized protein yabS Length = 253 Score = 199 bits (506), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 110/249 (44%), Positives = 150/249 (60%), Gaps = 4/249 (1%) Query: 1 MKQILLITDGCSNVGESPVMAAAHARQEGITVNVVGVVDYGTIGEMGSREIADIAKAGGG 60 ++QIL++TDGCSN G SPV AAA AR++GITVNV+GV+D +GE G +EI DIA+AGGG Sbjct: 6 LRQILVVTDGCSNSGMSPVAAAALAREQGITVNVIGVIDKSELGEKGEKEIRDIAEAGGG 65 Query: 61 LSRIVGTPQLAQTIQMMTRKTVVQTIQQAVNKEVKKIXXXXXXXXXXXXQRSQXXXXXXX 120 L IV QLAQT+QM+TRK + +TI Q VNKE+K+I +R Q Sbjct: 66 LCDIVYPQQLAQTVQMLTRKAMTRTIHQVVNKELKEILGDSGIEELAPDKRVQVAGMVDE 125 Query: 121 XXXXXPLRIALLIDASASMKPKLGAVEDAIRDLALSLEAREGKSEIAVFHFPGRSSSEEA 180 L + +L+D S SMKPKL AV+ AI D ++SL +R G S +AV FPG+ + Sbjct: 126 LGEKSSLNVVMLVDTSGSMKPKLSAVQQAIHDFSISLHSRSGHSRMAVGSFPGKQKHLD- 184 Query: 181 MLDMDWTHNVSEVRSLFSKLKMRGATPTGPAIFKVLEHYRYDTLDEH-RERPTD-GGYDE 238 + + WT V + + S L M G TPTGPAI + + + D L ++R D D+ Sbjct: 185 -IRIPWTEKVEQAHQITSDLAMSGITPTGPAIVEAIALFEQDKLPRSLQDRYIDQDDEDD 243 Query: 239 KEGMIGGYV 247 GM+ +V Sbjct: 244 SNGMLRDHV 252 >A4IJE1.1 A4IJE1_GEOTN Putative uncharacterized protein Length = 246 Score = 190 bits (483), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 102/220 (46%), Positives = 140/220 (63%), Gaps = 3/220 (1%) Query: 1 MKQILLITDGCSNVGESPVMAAAHARQEGITVNVVGVVDYGTIGEMGSREIADIAKAGGG 60 ++QILLITDGCSN GE P AA AR++GITVNV+GV+D TI E G REI IA AGGG Sbjct: 6 LRQILLITDGCSNHGEDPAAMAALAREQGITVNVIGVLDQDTIDENGQREIEAIAAAGGG 65 Query: 61 LSRIVGTPQLAQTIQMMTRKTVVQTIQQAVNKEVKKIX-XXXXXXXXXXXQRSQXXXXXX 119 +S++V QL+QT+QM+TR+ + QT+Q VN+E+K+I +R Q Sbjct: 66 MSQVVYARQLSQTVQMVTRQAMTQTLQGLVNRELKQIFGSDVSLEDLPPDKRGQVMEVVD 125 Query: 120 XXXXXXPLRIALLIDASASMKPKLGAVEDAIRDLALSLEAREGKSEIAVFHFPGRSSSEE 179 L + +LID S SMK KL V++A+ DL+LSL AR G++ +VF FPG+ E Sbjct: 126 ELGETAALDVLILIDTSGSMKTKLPTVKEALVDLSLSLNARMGENRFSVFIFPGKRQHAE 185 Query: 180 AMLDMDWTHNVSEVRSLFSKLKMRGATPTGPAIFKVLEHY 219 M+ DWT + E+ ++F KL G TPTGPA+ + + H+ Sbjct: 186 KMI--DWTPRIEELSTIFPKLASGGLTPTGPALREAIAHF 223 >B4BS34.1 B4BS34_9BACI Putative uncharacterized protein Length = 246 Score = 190 bits (483), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 102/220 (46%), Positives = 140/220 (63%), Gaps = 3/220 (1%) Query: 1 MKQILLITDGCSNVGESPVMAAAHARQEGITVNVVGVVDYGTIGEMGSREIADIAKAGGG 60 ++QILLITDGCSN GE P AA AR++GITVNV+GV+D TI E G REI IA AGGG Sbjct: 6 LRQILLITDGCSNHGEDPAAMAALAREQGITVNVIGVLDQDTIDENGQREIEAIAAAGGG 65 Query: 61 LSRIVGTPQLAQTIQMMTRKTVVQTIQQAVNKEVKKIX-XXXXXXXXXXXQRSQXXXXXX 119 +S++V QL+QT+QM+TR+ + QT+Q VN+E+K+I +R Q Sbjct: 66 MSQVVYARQLSQTVQMVTRQAMTQTLQGLVNRELKQIFGSDVSLEDLPPDKRGQVMEVVD 125 Query: 120 XXXXXXPLRIALLIDASASMKPKLGAVEDAIRDLALSLEAREGKSEIAVFHFPGRSSSEE 179 L + +LID S SMK KL V++A+ DL+LSL AR G++ +VF FPG+ E Sbjct: 126 ELGETAALDVLILIDTSGSMKTKLPTVKEALVDLSLSLNARMGENRFSVFIFPGKRQHAE 185 Query: 180 AMLDMDWTHNVSEVRSLFSKLKMRGATPTGPAIFKVLEHY 219 M+ DWT + E+ ++F KL G TPTGPA+ + + H+ Sbjct: 186 KMI--DWTPRIEELSTIFPKLASGGLTPTGPALREAIAHF 223 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.132 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,227,290,047 Number of extensions: 43290053 Number of successful extensions: 112900 Number of sequences better than 1.0e-05: 27 Number of HSP's gapped: 112853 Number of HSP's successfully gapped: 27 Length of query: 248 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 116 Effective length of database: 1,817,122,223 Effective search space: 210786177868 Effective search space used: 210786177868 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)