BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0060.0001.p
         (69 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K910.1 B3K910_9BACI Aminotransferase class IV                        86   9e-16
B1DID4.1 B1DID4_9BACL Aminotransferase class IV                        79   2e-13
B0YJD2.1 B0YJD2_PAEPO 4-amino-4-deoxychorismate lyase                  78   2e-13
Q2B270.1 Q2B270_9BACI 4-amino-4-deoxychorismate lyase EC=4.1.3.38      75   3e-12
A8W1V6.1 A8W1V6_9BACI tRNA modification GTPase TrmE                    73   6e-12

>B3K910.1 B3K910_9BACI Aminotransferase class IV
          Length = 295

 Score = 86.3 bits (212), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 36/52 (69%), Positives = 44/52 (84%)

Query: 1  MNYIGFNHQVVDAKNAVISALDHGFLYGMGLFETFRTYKGEPFLLQRHLDRL 52
          M YIG N  +V+A +AVI  +DHG LYGMGLFETFRTY+G+PFLL+RHL+RL
Sbjct: 1  MKYIGMNGGIVEAADAVIPVMDHGLLYGMGLFETFRTYQGKPFLLERHLNRL 52


>B1DID4.1 B1DID4_9BACL Aminotransferase class IV
          Length = 293

 Score = 78.6 bits (192), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/49 (67%), Positives = 40/49 (81%)

Query: 4  IGFNHQVVDAKNAVISALDHGFLYGMGLFETFRTYKGEPFLLQRHLDRL 52
          IG N  V+++  AVIS  DHGFLYGMGLFETFRTY G+P+LL+RH+ RL
Sbjct: 3  IGLNQAVMESGEAVISVYDHGFLYGMGLFETFRTYGGKPYLLERHMKRL 51


>B0YJD2.1 B0YJD2_PAEPO 4-amino-4-deoxychorismate lyase
          Length = 298

 Score = 78.2 bits (191), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/65 (61%), Positives = 43/65 (66%), Gaps = 3/65 (4%)

Query: 1  MNYIGFNHQVVDAKNAVISALDHGFLYGMGLFETFRTYKGEPFLLQRHLDRLVPLFTACF 60
          M YIG N  + +A  AVI   DHGFLYGMGLFETFRTYKG PFLL RHL RL      C 
Sbjct: 1  MKYIGVNGVLTEAAKAVIHVSDHGFLYGMGLFETFRTYKGVPFLLDRHLHRLQ---EGCR 57

Query: 61 ILKFP 65
          +L  P
Sbjct: 58 MLGIP 62


>Q2B270.1 Q2B270_9BACI 4-amino-4-deoxychorismate lyase EC=4.1.3.38
          Length = 291

 Score = 74.7 bits (182), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/50 (68%), Positives = 38/50 (76%)

Query: 3  YIGFNHQVVDAKNAVISALDHGFLYGMGLFETFRTYKGEPFLLQRHLDRL 52
          +I  N ++V A+ AVIS  DHGFLYGMGLFETFR Y G PFLL  HLDRL
Sbjct: 2  HILINDRLVSAEEAVISPFDHGFLYGMGLFETFRVYDGHPFLLDDHLDRL 51


>A8W1V6.1 A8W1V6_9BACI tRNA modification GTPase TrmE
          Length = 286

 Score = 73.2 bits (178), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 32/50 (64%), Positives = 36/50 (72%)

Query: 3  YIGFNHQVVDAKNAVISALDHGFLYGMGLFETFRTYKGEPFLLQRHLDRL 52
          YI  N  ++  + A IS LDHGFLYGMGLFETFRTY G PFLL  H+ RL
Sbjct: 2  YIKVNGTIIPEEEARISPLDHGFLYGMGLFETFRTYDGHPFLLDEHMKRL 51


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.331    0.148    0.462 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 407,885,175
Number of extensions: 13491792
Number of successful extensions: 35873
Number of sequences better than 1.0e-05: 120
Number of HSP's gapped: 35884
Number of HSP's successfully gapped: 120
Length of query: 69
Length of database: 3,060,696,203
Length adjustment: 41
Effective length of query: 28
Effective length of database: 2,674,434,588
Effective search space: 74884168464
Effective search space used: 74884168464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 125 (52.8 bits)