BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0058.0003.p
         (89 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K7N2.1 B3K7N2_9BACI Putative uncharacterized protein                112   1e-23
C0Z9I6.1 C0Z9I6_BREBN Putative uncharacterized protein                 76   8e-13
A6CHK9.1 A6CHK9_9BACI Putative uncharacterized protein                 68   2e-10
C3B646.1 C3B646_BACMY Putative uncharacterized protein                 66   8e-10
C3ANQ0.1 C3ANQ0_BACMY Putative uncharacterized protein                 66   8e-10

>B3K7N2.1 B3K7N2_9BACI Putative uncharacterized protein
          Length = 92

 Score =  112 bits (279), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 51/83 (61%), Positives = 66/83 (79%)

Query: 5  GDLFMKPIKLPKEQREIITENIRAYFEAERGESIGHLAADNLLEFFLQELGPAIYNGALG 64
          G   MKP K PKEQRE + E ++ YFE ERGE++G+LAA+++L+FF++ LGP +YN AL 
Sbjct: 5  GHHLMKPSKFPKEQREQLIELVQEYFETERGETLGNLAAESVLDFFVETLGPHLYNQALS 64

Query: 65 DCRTLVGQRMQSLEDDIYALEWK 87
          DCRT+V QRM SLE+DIYALE K
Sbjct: 65 DCRTVVSQRMISLEEDIYALEQK 87


>C0Z9I6.1 C0Z9I6_BREBN Putative uncharacterized protein
          Length = 83

 Score = 76.3 bits (186), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 34/75 (45%), Positives = 50/75 (66%)

Query: 11 PIKLPKEQREIITENIRAYFEAERGESIGHLAADNLLEFFLQELGPAIYNGALGDCRTLV 70
          P KL +EQ E +   ++ YF+ ER E++G+L  + L+ FF +ELGP  YN  + D R L+
Sbjct: 2  PTKLTREQMEYLVHQVQRYFKEERSETLGNLETEELIAFFSKELGPFYYNQGVQDSRKLL 61

Query: 71 GQRMQSLEDDIYALE 85
           +RM SLED++Y LE
Sbjct: 62 MERMSSLEDELYVLE 76


>A6CHK9.1 A6CHK9_9BACI Putative uncharacterized protein
          Length = 81

 Score = 68.2 bits (165), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 50/74 (67%)

Query: 12 IKLPKEQREIITENIRAYFEAERGESIGHLAADNLLEFFLQELGPAIYNGALGDCRTLVG 71
          IK+PKE+++ I   I+ +   + GE IG + A+NL +FF++ELGP  YN  + D + ++ 
Sbjct: 4  IKMPKEEKDDIIGRIQTFHYEQHGEEIGIIGAENLFDFFMKELGPYFYNKGVMDSKEVLM 63

Query: 72 QRMQSLEDDIYALE 85
           +M  +EDD+YAL+
Sbjct: 64 DKMLLMEDDLYALK 77


>C3B646.1 C3B646_BACMY Putative uncharacterized protein
          Length = 82

 Score = 66.2 bits (160), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 51/77 (66%)

Query: 9  MKPIKLPKEQREIITENIRAYFEAERGESIGHLAADNLLEFFLQELGPAIYNGALGDCRT 68
          M  +K+P E+++ + E I+ +FE E  ++IG   A+ L+E  ++ LGP  YN A+GD R 
Sbjct: 1  MMNVKIPNEKKDELVEQIQKFFEEEDLDTIGRFQAERLIEEMIRLLGPYAYNQAIGDARK 60

Query: 69 LVGQRMQSLEDDIYALE 85
          L+  ++ ++E+D+Y LE
Sbjct: 61 LITDKLSNIEEDLYVLE 77


>C3ANQ0.1 C3ANQ0_BACMY Putative uncharacterized protein
          Length = 82

 Score = 66.2 bits (160), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 51/77 (66%)

Query: 9  MKPIKLPKEQREIITENIRAYFEAERGESIGHLAADNLLEFFLQELGPAIYNGALGDCRT 68
          M  +K+P E+++ + E I+ +FE E  ++IG   A+ L+E  ++ LGP  YN A+GD R 
Sbjct: 1  MMNVKIPNEKKDELVEQIQKFFEEEDLDTIGRFQAERLIEEMIRLLGPYAYNQAIGDARK 60

Query: 69 LVGQRMQSLEDDIYALE 85
          L+  ++ ++E+D+Y LE
Sbjct: 61 LITDKLSNIEEDLYVLE 77


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.321    0.141    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 528,622,630
Number of extensions: 17807327
Number of successful extensions: 38624
Number of sequences better than 1.0e-05: 143
Number of HSP's gapped: 38621
Number of HSP's successfully gapped: 143
Length of query: 89
Length of database: 3,060,696,203
Length adjustment: 59
Effective length of query: 30
Effective length of database: 2,504,856,318
Effective search space: 75145689540
Effective search space used: 75145689540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)