BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0057.0018.p (486 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q65DD8.1 Q65DD8_BACLD Catalase EC=1.11.1.6 866 0.0 Q9AQQ9.1 Q9AQQ9_BACSU Catalase EC=1.11.1.6 865 0.0 P26901.5 CATA_BACSU Vegetative catalase EC=1.11.1.6 865 0.0 B1D4Z0.1 B1D4Z0_9BACL Catalase EC=1.11.1.6 863 0.0 Q2BB19.1 Q2BB19_9BACI Catalase EC=1.11.1.6 862 0.0 >Q65DD8.1 Q65DD8_BACLD Catalase EC=1.11.1.6 Length = 485 Score = 866 bits (2237), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/484 (84%), Positives = 441/484 (91%) Query: 1 MSESPNKLTTSWGAPVGDNQNSMTAGSRGPTLLQDVHLLEKLAHFNRERVPERVVHAKGA 60 M+ + N LTTSWGAPVGDNQNSMTAGSRGPTL+QDVHLLEKLAHFNRERVPERVVHAKGA Sbjct: 1 MTTNKNNLTTSWGAPVGDNQNSMTAGSRGPTLIQDVHLLEKLAHFNRERVPERVVHAKGA 60 Query: 61 GAHGYFEVTQDLSKYTKAAFLSEVGKRTPMFIRFSTVAGELGSADTVRDPRGFAVKFYTE 120 GAHGYFEVT D+SKYTKA FLSEVGKRTP+F+RFSTVAGE GSAD+VRDPRGFAVKFYTE Sbjct: 61 GAHGYFEVTNDVSKYTKAKFLSEVGKRTPLFVRFSTVAGENGSADSVRDPRGFAVKFYTE 120 Query: 121 EGNYDLVGNNTPVFFIRDAIKFPDFIHTQKRHPQTHLKNPNAVWDFWSLSPESLHQVTIL 180 EGNYDLVGNNTPVFFIRDAIKFPDFIHTQKRHP THLKNP+AVWDFWSLSPESLHQVTIL Sbjct: 121 EGNYDLVGNNTPVFFIRDAIKFPDFIHTQKRHPVTHLKNPDAVWDFWSLSPESLHQVTIL 180 Query: 181 MSDRGIPATLRHMHGFGSHTFKWVNADGAAVWVKYHFKTEQGVKNLDVKLAAQIAGENPD 240 MSDRGIPAT RHMHGFGSHTFKWVNA+G VW+KYHFKTEQG+KNL ++ +IAGENPD Sbjct: 181 MSDRGIPATYRHMHGFGSHTFKWVNAEGEGVWIKYHFKTEQGIKNLTEEVGTKIAGENPD 240 Query: 241 YHTEDLFNAIDQGDFPAWRLYVQIMPVEDADTYRFDPFDVTKVWSQKDYPLIEVGRMVLD 300 YHT+DL+ AI++GDFPAW+LYVQIMP+EDADTYRFDPFDVTKVWSQKDYPLIEVGRMVL+ Sbjct: 241 YHTQDLYEAIEKGDFPAWKLYVQIMPLEDADTYRFDPFDVTKVWSQKDYPLIEVGRMVLN 300 Query: 301 RNPENYFAEVEQATFSPGSFVPGIEASPDKMLQGRLFAYGDAHRYRVGANHNQLPINRPV 360 RNPENYFAEVEQATFSPG+ VPGIE SPDKMLQGRLFAY DAHRYRVGANHN LPINRP Sbjct: 301 RNPENYFAEVEQATFSPGTLVPGIEPSPDKMLQGRLFAYADAHRYRVGANHNSLPINRPK 360 Query: 361 AEVNNNQRDGAMIHGNNGGGSVYYEPNSFGGAAESPAHKPAAFDVSGKADSVPYDHDDHY 420 AEV+N QRDG M +NGGGSVYYEPNSFGG E+P +K A+ VSG ADS YDH+DHY Sbjct: 361 AEVHNYQRDGQMRFDSNGGGSVYYEPNSFGGPQETPENKTTAYPVSGSADSTAYDHNDHY 420 Query: 421 TQPGDLYRLLSEEERARLVRNIVGAMTPVEKDEIKLRQIGHFYKADPEFGQRVAAGLGLT 480 TQ GDLYRLLSEEER RLV NIVG+M V KDEIKLRQI HFYKADPE+G RVA GLGL+ Sbjct: 421 TQAGDLYRLLSEEERTRLVSNIVGSMKQVTKDEIKLRQIQHFYKADPEYGTRVAEGLGLS 480 Query: 481 VPQQ 484 VPQ+ Sbjct: 481 VPQE 484 >Q9AQQ9.1 Q9AQQ9_BACSU Catalase EC=1.11.1.6 Length = 483 Score = 865 bits (2236), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/480 (85%), Positives = 438/480 (91%) Query: 4 SPNKLTTSWGAPVGDNQNSMTAGSRGPTLLQDVHLLEKLAHFNRERVPERVVHAKGAGAH 63 S NKLTTSWGAPVGDNQNSMTAGSRGPTL+QDVHLLEKLAHFNRERVPERVVHAKGAGAH Sbjct: 2 SSNKLTTSWGAPVGDNQNSMTAGSRGPTLIQDVHLLEKLAHFNRERVPERVVHAKGAGAH 61 Query: 64 GYFEVTQDLSKYTKAAFLSEVGKRTPMFIRFSTVAGELGSADTVRDPRGFAVKFYTEEGN 123 GYFEVT D++KYTKAAFLSEVGKRTP+FIRFSTVAGELGSADTVRDPRGFAVKFYTEEGN Sbjct: 62 GYFEVTNDVTKYTKAAFLSEVGKRTPLFIRFSTVAGELGSADTVRDPRGFAVKFYTEEGN 121 Query: 124 YDLVGNNTPVFFIRDAIKFPDFIHTQKRHPQTHLKNPNAVWDFWSLSPESLHQVTILMSD 183 YD+VGNNTPVFFIRDAIKFPDFIHTQKR P+THLKNP AVWDFWSLSPESLHQVTILMSD Sbjct: 122 YDIVGNNTPVFFIRDAIKFPDFIHTQKRDPKTHLKNPTAVWDFWSLSPESLHQVTILMSD 181 Query: 184 RGIPATLRHMHGFGSHTFKWVNADGAAVWVKYHFKTEQGVKNLDVKLAAQIAGENPDYHT 243 RGIPATLRHMHGFGSHTFKW NA+G VW+KYHFKTEQGVKNLDV AA+IAGENPDYHT Sbjct: 182 RGIPATLRHMHGFGSHTFKWTNAEGEGVWIKYHFKTEQGVKNLDVNTAAKIAGENPDYHT 241 Query: 244 EDLFNAIDQGDFPAWRLYVQIMPVEDADTYRFDPFDVTKVWSQKDYPLIEVGRMVLDRNP 303 EDLFNAI+ GD+PAW+LYVQIMP+EDA TYRFDPFDVTKVWSQKDYPLIEVGRMVLDRNP Sbjct: 242 EDLFNAIENGDYPAWKLYVQIMPLEDAKTYRFDPFDVTKVWSQKDYPLIEVGRMVLDRNP 301 Query: 304 ENYFAEVEQATFSPGSFVPGIEASPDKMLQGRLFAYGDAHRYRVGANHNQLPINRPVAEV 363 ENYFAEVEQATFSPG+ VPGI+ SPDKMLQGRLFAY DAHRYRVGANH LPINR +V Sbjct: 302 ENYFAEVEQATFSPGTLVPGIDVSPDKMLQGRLFAYHDAHRYRVGANHQALPINRARNKV 361 Query: 364 NNNQRDGAMIHGNNGGGSVYYEPNSFGGAAESPAHKPAAFDVSGKADSVPYDHDDHYTQP 423 NN QRDG M +NGGGSVYYEPNSFGG ESP K AA+ V G ADSV YDH+DHYTQ Sbjct: 362 NNYQRDGQMRFDDNGGGSVYYEPNSFGGPKESPEDKQAAYPVQGIADSVSYDHNDHYTQA 421 Query: 424 GDLYRLLSEEERARLVRNIVGAMTPVEKDEIKLRQIGHFYKADPEFGQRVAAGLGLTVPQ 483 GDLYRL+SE+ER RLV NIV AM PVEK+EIKLRQI HFYKADPE+G+RVA GLGL + + Sbjct: 422 GDLYRLMSEDERTRLVENIVNAMKPVEKEEIKLRQIEHFYKADPEYGKRVAEGLGLPIKK 481 >P26901.5 CATA_BACSU Vegetative catalase EC=1.11.1.6 Length = 483 Score = 865 bits (2234), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/480 (85%), Positives = 438/480 (91%) Query: 4 SPNKLTTSWGAPVGDNQNSMTAGSRGPTLLQDVHLLEKLAHFNRERVPERVVHAKGAGAH 63 S NKLTTSWGAPVGDNQNSMTAGSRGPTL+QDVHLLEKLAHFNRERVPERVVHAKGAGAH Sbjct: 2 SSNKLTTSWGAPVGDNQNSMTAGSRGPTLIQDVHLLEKLAHFNRERVPERVVHAKGAGAH 61 Query: 64 GYFEVTQDLSKYTKAAFLSEVGKRTPMFIRFSTVAGELGSADTVRDPRGFAVKFYTEEGN 123 GYFEVT D++KYTKAAFLSEVGKRTP+FIRFSTVAGELGSADTVRDPRGFAVKFYTEEGN Sbjct: 62 GYFEVTNDVTKYTKAAFLSEVGKRTPLFIRFSTVAGELGSADTVRDPRGFAVKFYTEEGN 121 Query: 124 YDLVGNNTPVFFIRDAIKFPDFIHTQKRHPQTHLKNPNAVWDFWSLSPESLHQVTILMSD 183 YD+VGNNTPVFFIRDAIKFPDFIHTQKR P+THLKNP AVWDFWSLSPESLHQVTILMSD Sbjct: 122 YDIVGNNTPVFFIRDAIKFPDFIHTQKRDPKTHLKNPTAVWDFWSLSPESLHQVTILMSD 181 Query: 184 RGIPATLRHMHGFGSHTFKWVNADGAAVWVKYHFKTEQGVKNLDVKLAAQIAGENPDYHT 243 RGIPATLRHMHGFGSHTFKW NA+G VW+KYHFKTEQGVKNLDV AA+IAGENPDYHT Sbjct: 182 RGIPATLRHMHGFGSHTFKWTNAEGEGVWIKYHFKTEQGVKNLDVNTAAKIAGENPDYHT 241 Query: 244 EDLFNAIDQGDFPAWRLYVQIMPVEDADTYRFDPFDVTKVWSQKDYPLIEVGRMVLDRNP 303 EDLFNAI+ GD+PAW+LYVQIMP+EDA+TYRFDPFDVTKVWSQKDYPLIEVGRMVLDRNP Sbjct: 242 EDLFNAIENGDYPAWKLYVQIMPLEDANTYRFDPFDVTKVWSQKDYPLIEVGRMVLDRNP 301 Query: 304 ENYFAEVEQATFSPGSFVPGIEASPDKMLQGRLFAYGDAHRYRVGANHNQLPINRPVAEV 363 ENYFAEVEQATFSPG+ VPGI+ SPDKMLQGRLFAY DAHRYRVGANH LPINR +V Sbjct: 302 ENYFAEVEQATFSPGTLVPGIDVSPDKMLQGRLFAYHDAHRYRVGANHQALPINRARNKV 361 Query: 364 NNNQRDGAMIHGNNGGGSVYYEPNSFGGAAESPAHKPAAFDVSGKADSVPYDHDDHYTQP 423 NN QRDG M +NGGGSVYYEPNSFGG ESP K AA+ V G ADSV YDH DHYTQ Sbjct: 362 NNYQRDGQMRFDDNGGGSVYYEPNSFGGPKESPEDKQAAYPVQGIADSVSYDHYDHYTQA 421 Query: 424 GDLYRLLSEEERARLVRNIVGAMTPVEKDEIKLRQIGHFYKADPEFGQRVAAGLGLTVPQ 483 GDLYRL+SE+ER RLV NIV AM PVEK+EIKLRQI HFYKADPE+G+RVA GLGL + + Sbjct: 422 GDLYRLMSEDERTRLVENIVNAMKPVEKEEIKLRQIEHFYKADPEYGKRVAEGLGLPIKK 481 >B1D4Z0.1 B1D4Z0_9BACL Catalase EC=1.11.1.6 Length = 485 Score = 863 bits (2230), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/483 (83%), Positives = 440/483 (91%) Query: 1 MSESPNKLTTSWGAPVGDNQNSMTAGSRGPTLLQDVHLLEKLAHFNRERVPERVVHAKGA 60 M +LTTSWGAPVGDNQNSMTAGSRGPTL+QDVHLLEKLAHFNRERVPERVVHAKGA Sbjct: 1 MEFKKGQLTTSWGAPVGDNQNSMTAGSRGPTLIQDVHLLEKLAHFNRERVPERVVHAKGA 60 Query: 61 GAHGYFEVTQDLSKYTKAAFLSEVGKRTPMFIRFSTVAGELGSADTVRDPRGFAVKFYTE 120 GAHGYFEVT D++ YTKA FLS+VGKRTP+F+RFSTVAGELGSADTVRDPRGFAVKFYTE Sbjct: 61 GAHGYFEVTHDVTSYTKAGFLSKVGKRTPVFVRFSTVAGELGSADTVRDPRGFAVKFYTE 120 Query: 121 EGNYDLVGNNTPVFFIRDAIKFPDFIHTQKRHPQTHLKNPNAVWDFWSLSPESLHQVTIL 180 EGNYDLVGNNTPVFFIRDAIKFPDFIHTQKRHPQTHLKNPNAVWDFWSLSPESLHQV+IL Sbjct: 121 EGNYDLVGNNTPVFFIRDAIKFPDFIHTQKRHPQTHLKNPNAVWDFWSLSPESLHQVSIL 180 Query: 181 MSDRGIPATLRHMHGFGSHTFKWVNADGAAVWVKYHFKTEQGVKNLDVKLAAQIAGENPD 240 MSDRGIPATLRHMHG+GSHTFKWVNADG VWVKYHF+TEQGVKNLDV+LAA++AG+NPD Sbjct: 181 MSDRGIPATLRHMHGYGSHTFKWVNADGRGVWVKYHFRTEQGVKNLDVELAAKLAGDNPD 240 Query: 241 YHTEDLFNAIDQGDFPAWRLYVQIMPVEDADTYRFDPFDVTKVWSQKDYPLIEVGRMVLD 300 YHTEDL+NAIDQ +FP+W+LYVQ+MP+EDA+TYRFDPFDVTKVWSQKDYPLIEVGRMVLD Sbjct: 241 YHTEDLYNAIDQANFPSWKLYVQMMPLEDANTYRFDPFDVTKVWSQKDYPLIEVGRMVLD 300 Query: 301 RNPENYFAEVEQATFSPGSFVPGIEASPDKMLQGRLFAYGDAHRYRVGANHNQLPINRPV 360 RNP+NYFAEVEQA FSPG+FVPGIEASPDKMLQGRLFAY DAHRYRVG NHN LPIN+PV Sbjct: 301 RNPDNYFAEVEQAAFSPGAFVPGIEASPDKMLQGRLFAYADAHRYRVGTNHNTLPINKPV 360 Query: 361 AEVNNNQRDGAMIHGNNGGGSVYYEPNSFGGAAESPAHKPAAFDVSGKADSVPYDHDDHY 420 EVNNNQRDG M + NGG SVYYEPNS GGA ES + +F+VSG A S P+D++DHY Sbjct: 361 VEVNNNQRDGQMRYDRNGGNSVYYEPNSCGGATESAISRTTSFEVSGSAGSAPHDNNDHY 420 Query: 421 TQPGDLYRLLSEEERARLVRNIVGAMTPVEKDEIKLRQIGHFYKADPEFGQRVAAGLGLT 480 TQPGDLYRLLS EER RL+ NIV AM PVEKDEIK RQI HFYKADPE+G VA GLGL Sbjct: 421 TQPGDLYRLLSTEERRRLINNIVNAMKPVEKDEIKQRQIAHFYKADPEWGNAVAEGLGLK 480 Query: 481 VPQ 483 + + Sbjct: 481 IAE 483 >Q2BB19.1 Q2BB19_9BACI Catalase EC=1.11.1.6 Length = 483 Score = 862 bits (2227), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/477 (85%), Positives = 437/477 (91%) Query: 6 NKLTTSWGAPVGDNQNSMTAGSRGPTLLQDVHLLEKLAHFNRERVPERVVHAKGAGAHGY 65 NKLTTSWGAPVGDNQNSMTAGSRGPTL+QDVHLLEKLAHFNRERVPERVVHAKGAGAHGY Sbjct: 4 NKLTTSWGAPVGDNQNSMTAGSRGPTLIQDVHLLEKLAHFNRERVPERVVHAKGAGAHGY 63 Query: 66 FEVTQDLSKYTKAAFLSEVGKRTPMFIRFSTVAGELGSADTVRDPRGFAVKFYTEEGNYD 125 FEVT DL+ YTKA+FLSEVGKRTP+FIRFSTVAGELGSADTVRDPRGFAVKFYTEEGNYD Sbjct: 64 FEVTNDLTTYTKASFLSEVGKRTPLFIRFSTVAGELGSADTVRDPRGFAVKFYTEEGNYD 123 Query: 126 LVGNNTPVFFIRDAIKFPDFIHTQKRHPQTHLKNPNAVWDFWSLSPESLHQVTILMSDRG 185 +VGNNTPVFFIRDAIKFPDFIHTQKRHPQTHLKNPNAVWDFWSLSPESLHQVTILMSDRG Sbjct: 124 IVGNNTPVFFIRDAIKFPDFIHTQKRHPQTHLKNPNAVWDFWSLSPESLHQVTILMSDRG 183 Query: 186 IPATLRHMHGFGSHTFKWVNADGAAVWVKYHFKTEQGVKNLDVKLAAQIAGENPDYHTED 245 IPATLRHMHGFGSHTFKWVN G VW+KYHFKTEQGVKNL + AA+IAGENPDYHTED Sbjct: 184 IPATLRHMHGFGSHTFKWVNQKGEGVWIKYHFKTEQGVKNLAPEAAAKIAGENPDYHTED 243 Query: 246 LFNAIDQGDFPAWRLYVQIMPVEDADTYRFDPFDVTKVWSQKDYPLIEVGRMVLDRNPEN 305 LFNAI+ GD+P+W+L VQIMP +DA+TYRFDPFDVTKVWSQKDYPLIEVGRMVL++NPEN Sbjct: 244 LFNAIENGDYPSWKLCVQIMPEKDAETYRFDPFDVTKVWSQKDYPLIEVGRMVLNKNPEN 303 Query: 306 YFAEVEQATFSPGSFVPGIEASPDKMLQGRLFAYGDAHRYRVGANHNQLPINRPVAEVNN 365 YFAEVEQATFSPG+ VPG++ SPDKMLQGRLFAY DAHRYRVGANH LPINR EVNN Sbjct: 304 YFAEVEQATFSPGTLVPGVDVSPDKMLQGRLFAYHDAHRYRVGANHQALPINRARNEVNN 363 Query: 366 NQRDGAMIHGNNGGGSVYYEPNSFGGAAESPAHKPAAFDVSGKADSVPYDHDDHYTQPGD 425 QRDG M +NGGGSVYYEPNSFGG E+P +KPA F V+G ADSV YDH+DHYTQ GD Sbjct: 364 YQRDGQMRFDSNGGGSVYYEPNSFGGPKETPENKPAPFAVTGAADSVSYDHNDHYTQAGD 423 Query: 426 LYRLLSEEERARLVRNIVGAMTPVEKDEIKLRQIGHFYKADPEFGQRVAAGLGLTVP 482 LYRL+SEEER+RLV NIVGAM PVE DEIKLRQI HF+KADPE+G +VA GLGL VP Sbjct: 424 LYRLMSEEERSRLVENIVGAMKPVESDEIKLRQIEHFFKADPEYGTKVAEGLGLQVP 480 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.136 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,288,388,723 Number of extensions: 150968654 Number of successful extensions: 298133 Number of sequences better than 1.0e-05: 2068 Number of HSP's gapped: 294177 Number of HSP's successfully gapped: 2081 Length of query: 486 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 346 Effective length of database: 1,741,754,103 Effective search space: 602646919638 Effective search space used: 602646919638 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)