BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0057.0017.p (412 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q1NVT9.1 Q1NVT9_9DELT GGDEF:Response regulator receiver 155 1e-35 Q1NWL0.1 Q1NWL0_9DELT GGDEF:Response regulator receiver 150 2e-34 Q6ARI2.1 Q6ARI2_DESPS Probable sensory transduction system regul... 150 2e-34 C1T7F0.1 C1T7F0_DESBA Diguanylate cyclase (GGDEF) domain-contain... 142 9e-32 Q1Q3F0.1 Q1Q3F0_9BACT Putative uncharacterized protein 136 4e-30 >Q1NVT9.1 Q1NVT9_9DELT GGDEF:Response regulator receiver Length = 302 Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 78/179 (43%), Positives = 108/179 (60%) Query: 228 KVHLELARANGELQRLSLTDALTEIPNRRAFDQQMQRLLSQNEEPGSLVAILMIDIDYFK 287 K HLEL R L+ ++L D LT I NRR FDQ ++R + + +++L++DID+FK Sbjct: 121 KNHLELKRYQDFLKNIALLDGLTGIANRRNFDQALEREWKRAQRSTQPLSLLLLDIDFFK 180 Query: 288 PFNDNYGHAEGDRILKEVAQAIQAEMKGEGQFAARLGGEEFVAAAFDTGVDGAMELSERI 347 P+NDNYGH GD L++VA +Q + AAR GGEEFV +T +GA ++ E I Sbjct: 181 PYNDNYGHGAGDDTLRQVASGLQQSLSRPADLAARYGGEEFVCLLPETNQEGAQKMGEEI 240 Query: 348 RARVQQLAVPHEYSEVSVHLTVSXXXXXXXXXXXXXXXQLMEHADKGLYLAKTGGRNRV 406 R + LA+PH +S+V+ H+TVS QL+E+ADK LY AK GRNRV Sbjct: 241 RRAIAGLAIPHAHSQVADHITVSVGAASMTANGNNNPAQLLENADKALYRAKESGRNRV 299 >Q1NWL0.1 Q1NWL0_9DELT GGDEF:Response regulator receiver Length = 303 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 77/179 (43%), Positives = 107/179 (59%) Query: 228 KVHLELARANGELQRLSLTDALTEIPNRRAFDQQMQRLLSQNEEPGSLVAILMIDIDYFK 287 K HLEL R LQ ++L D LT I NRR FD ++R S+ + +++L++DID+FK Sbjct: 121 KNHLELKRYQDFLQDIALLDGLTGIANRRNFDLALEREWSRAQRSAQPLSLLLLDIDFFK 180 Query: 288 PFNDNYGHAEGDRILKEVAQAIQAEMKGEGQFAARLGGEEFVAAAFDTGVDGAMELSERI 347 P+NDNYGH GD L+ VA +Q + AAR GGEEFV +T +GA +++E + Sbjct: 181 PYNDNYGHGPGDDTLRRVATGLQQSLSRPADLAARYGGEEFVCLLPETDREGAQKMAEEV 240 Query: 348 RARVQQLAVPHEYSEVSVHLTVSXXXXXXXXXXXXXXXQLMEHADKGLYLAKTGGRNRV 406 R + LA+PH +S+V+ H+TVS QL+E AD+ LY AK GRNRV Sbjct: 241 RRTIAGLAIPHAHSQVADHITVSVGAASIAPNGNGNPAQLLESADQALYQAKESGRNRV 299 >Q6ARI2.1 Q6ARI2_DESPS Probable sensory transduction system regulatory protein Length = 449 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 93/238 (39%), Positives = 131/238 (55%), Gaps = 5/238 (2%) Query: 175 DVLVGH-YINLTVFLFFTWMASRILYVNFCSNYYNRILLGASHRKLEEQIIRNEKVHLEL 233 ++L+ H I L+ L + R++ N N+ LL H++ E IR EL Sbjct: 211 ELLLSHGLIWLSGLLLIYFGGRRVMLSTEERNQANKELL--RHKQHLEIKIRQRTA--EL 266 Query: 234 ARANGELQRLSLTDALTEIPNRRAFDQQMQRLLSQNEEPGSLVAILMIDIDYFKPFNDNY 293 AN +L+ +SLTD LT I NRR FD + + S+ + + ++MIDIDYFK FND Y Sbjct: 267 TEANQKLEHISLTDGLTGIANRRHFDNLIAKEWSRAIREKTPITLIMIDIDYFKLFNDLY 326 Query: 294 GHAEGDRILKEVAQAIQAEMKGEGQFAARLGGEEFVAAAFDTGVDGAMELSERIRARVQQ 353 GH EGD LK VA A+ AEM+ F AR GGEEF A +TG GA+ ++E++RA + + Sbjct: 327 GHPEGDICLKTVAMALNAEMRRSTDFVARYGGEEFAAILPNTGGPGALVMAEKMRASIAK 386 Query: 354 LAVPHEYSEVSVHLTVSXXXXXXXXXXXXXXXQLMEHADKGLYLAKTGGRNRVSGASS 411 L + H+ SE++ +LT+S +E ADK LY AKT GRN+ S Sbjct: 387 LEIEHKDSEINNYLTISLGAISVVPKKGSDFSHFIEQADKALYTAKTEGRNQARAFSP 444 >C1T7F0.1 C1T7F0_DESBA Diguanylate cyclase (GGDEF) domain-containing protein Length = 339 Score = 142 bits (357), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 77/195 (39%), Positives = 114/195 (58%), Gaps = 4/195 (2%) Query: 218 KLEEQIIRNEKVHLELARANGELQRLSLTDALTEIPNRRAFDQQMQRLLSQNEEPGSLVA 277 +LE +I++ + EL AN L LSLTD LT I NRR FD + S++ GS +A Sbjct: 147 QLEAKILQRTR---ELEEANHRLSELSLTDGLTGIANRRRFDAALAEEWSRSARTGSTLA 203 Query: 278 ILMIDIDYFKPFNDNYGHAEGDRILKEVAQAIQAEMKGEGQFAARLGGEEFVAAAFDTGV 337 ++M+DID+FK +ND+YGH +GD L+ VA+ +++ + +G +R GGEEF DT + Sbjct: 204 LIMLDIDHFKKYNDHYGHQQGDDCLRRVAEVLRSSARRQGDLVSRYGGEEFCMILPDTAL 263 Query: 338 DGAMELSERIRARVQQLAVPHEYSEVSVHLTVSXXXXXXXXXXXXXXXQLMEHADKGLYL 397 GA E++ER+R V+ + +PH S+V +T S +L+ AD+ LY Sbjct: 264 PGAFEIAERLRREVENMDMPHVLSDVG-RVTASMGVAASMPCKAMSPAELLRRADESLYQ 322 Query: 398 AKTGGRNRVSGASST 412 AK+ GRN V GA S Sbjct: 323 AKSEGRNCVRGAFSC 337 >Q1Q3F0.1 Q1Q3F0_9BACT Putative uncharacterized protein Length = 344 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 73/178 (41%), Positives = 106/178 (59%) Query: 227 EKVHLELARANGELQRLSLTDALTEIPNRRAFDQQMQRLLSQNEEPGSLVAILMIDIDYF 286 EK + EL +AN +L +LS TD+LT + NRR FD+ + Q+ +++LMIDID+F Sbjct: 163 EKTNQELQQANEKLHQLSRTDSLTGLANRRFFDEMLHNEWKQSVRLAKPLSLLMIDIDFF 222 Query: 287 KPFNDNYGHAEGDRILKEVAQAIQAEMKGEGQFAARLGGEEFVAAAFDTGVDGAMELSER 346 K +ND YGH +GD LK V+ AI + +K E AR GGEEFVA DT GA+ +++ Sbjct: 223 KNYNDTYGHQKGDECLKRVSMAILSALKRECDIIARYGGEEFVALLSDTDESGAVMVAKA 282 Query: 347 IRARVQQLAVPHEYSEVSVHLTVSXXXXXXXXXXXXXXXQLMEHADKGLYLAKTGGRN 404 +++ ++ + +PH+ S S +TVS +L+ ADK LYLAK GRN Sbjct: 283 MQSNIEAMNIPHKDSNASGRITVSIGISNEVPSAASSPEKLISKADKALYLAKYEGRN 340 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.325 0.139 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,063,207,966 Number of extensions: 78949467 Number of successful extensions: 315960 Number of sequences better than 1.0e-05: 13406 Number of HSP's gapped: 298432 Number of HSP's successfully gapped: 13421 Length of query: 412 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 274 Effective length of database: 1,760,596,133 Effective search space: 482403340442 Effective search space used: 482403340442 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 132 (55.5 bits)