BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0057.0015.p (297 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q896T9.1 Q896T9_CLOTE Ribokinase EC=2.7.1.15 233 2e-59 B7KKB5.1 B7KKB5_CYAP7 Ribokinase 217 9e-55 C4IBY4.1 C4IBY4_CLOBU Ribokinase EC=2.7.1.15 214 5e-54 A7LW47.1 A7LW47_BACOV Putative uncharacterized protein 212 3e-53 A6LCJ5.1 A6LCJ5_PARD8 Ribokinase 210 2e-52 >Q896T9.1 Q896T9_CLOTE Ribokinase EC=2.7.1.15 Length = 308 Score = 233 bits (593), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 123/293 (41%), Positives = 175/293 (59%) Query: 1 MDMVVRTSRAPNAGETLFGQGFALSPXXXXXXXXXXXXXXXXDVQMIGRVGRDTFGSELL 60 MD+V +T RAP GET+ G+ F+ V MIG++G+D+FG + Sbjct: 14 MDLVAQTPRAPIEGETIIGKSFSQFTGGKGANQAVAAARLGAYVTMIGKLGKDSFGEAHI 73 Query: 61 EVMRKEQINTEHIGQSETQTTGVASIVVDGEGENRIIVVPGANIEMGPADIAALEPVISQ 120 E +R+E IN +++ + +++GV I ++ G NRIIV+PGAN+++ P ++ LE I Sbjct: 74 ESLRREGINHDYVLFDDVESSGVGHITLEENGNNRIIVIPGANLKLTPKEVEDLEDNIKS 133 Query: 121 AEIVVMQLETDLXXXXXXXXXXXXXGIPVILNPAPARELDDEFLQHVTYLTPNETEAGIL 180 ++IV++QLE G +ILNPAPA +L + F++ V Y+ PNE+EA +L Sbjct: 134 SDIVILQLEIPFETVYKTIELAHKHGKTIILNPAPAAKLKEHFVELVDYIVPNESEASLL 193 Query: 181 AGIAVNSVAEAEQAAHILLQKGVQNVIVTLGSKGALIVNKGGTLHIPGFPVQAVDTVAAG 240 GI VNS+ A +AA LL G +NVI+TLG KG L+VN + F V+ VDT AAG Sbjct: 194 TGIKVNSIESARKAAKSLLNLGCKNVIITLGEKGVLLVNNNEEIFQESFKVKPVDTTAAG 253 Query: 241 DSFNGALAWQLTQGKTLAEAARFANAVGALAVGKQGAIPSLPYLPEVEQFLQD 293 DSF GA A+ L G ++ FA AVGAL V K GA PSLP L EVE F+++ Sbjct: 254 DSFIGAFAYSLANGLGNVKSLEFACAVGALTVTKIGAQPSLPKLTEVEMFMKE 306 >B7KKB5.1 B7KKB5_CYAP7 Ribokinase Length = 299 Score = 217 bits (553), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 124/287 (43%), Positives = 167/287 (58%) Query: 2 DMVVRTSRAPNAGETLFGQGFALSPXXXXXXXXXXXXXXXXDVQMIGRVGRDTFGSELLE 61 DMV++ R P GET+ G F ++P V+++ +VG D FG + + Sbjct: 12 DMVIQAPRLPARGETILGGQFVMNPGGKGANQAVAATRLGGKVRLLTKVGDDLFGQQTIS 71 Query: 62 VMRKEQINTEHIGQSETQTTGVASIVVDGEGENRIIVVPGANIEMGPADIAALEPVISQA 121 ++ E I T+++ +GVA I VD GEN I+V GAN+ +G +I L I QA Sbjct: 72 RLKNEGILTDYVLIDSRYPSGVALITVDEGGENTIVVASGANMALGEKEILVLMNPIEQA 131 Query: 122 EIVVMQLETDLXXXXXXXXXXXXXGIPVILNPAPARELDDEFLQHVTYLTPNETEAGILA 181 I+++QLE L G VILNPAPA L D L ++ LTPN+TEA +L Sbjct: 132 TIILLQLEIPLQTVELAAKTASNLGKTVILNPAPAYPLSDSLLSKISILTPNQTEAQMLT 191 Query: 182 GIAVNSVAEAEQAAHILLQKGVQNVIVTLGSKGALIVNKGGTLHIPGFPVQAVDTVAAGD 241 GI VNS A+ AA L +KGV NVI+TLG +GA + N+ T IPG+PV+AVDT AAGD Sbjct: 192 GIKVNSPETADLAAQHLHKKGVANVIITLGKEGAYLCNEQTTQLIPGYPVEAVDTTAAGD 251 Query: 242 SFNGALAWQLTQGKTLAEAARFANAVGALAVGKQGAIPSLPYLPEVE 288 +FNGALA L +GK L EA FAN +L+V + GA S+PY E+E Sbjct: 252 TFNGALAVALLEGKELIEAISFANLAASLSVTRLGAQSSIPYRYELE 298 >C4IBY4.1 C4IBY4_CLOBU Ribokinase EC=2.7.1.15 Length = 305 Score = 214 bits (546), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 110/294 (37%), Positives = 169/294 (57%), Gaps = 4/294 (1%) Query: 1 MDMVVRTSRAPNAGETLFGQGFALSPXXXXXXXXXXXXXXXXDVQMIGRVGRDTFGSELL 60 MDM+V P GET+ + F L+ +V MI ++G+D +G E+L Sbjct: 12 MDMIVSVDEMPQVGETIISENFKLAHGGKGANQAVAAKRMGNEVHMISKIGKDAYGYEIL 71 Query: 61 EVMRKEQINTEHIGQSETQTTGVASIVVDGEGENRIIVVPGANIEMGPADIAALEPVISQ 120 E ++ E I+ + Q + + TG A I V+ +G N I+V+PGAN+ + +I + + +I Sbjct: 72 ESLKNENIDVSKVFQDKCKPTGTAIITVNKDGNNSIVVIPGANMAIDKYEIESCKDIIIN 131 Query: 121 AEIVVMQLETDLXXXXXXXXXXXXXGIPVILNPAPARELDDEFLQHVTYLTPNETEAGIL 180 ++IVV Q ET L + ILNPAPA ++ DE L++ + PNETEA L Sbjct: 132 SDIVVAQFETTLDATIEAFKIAKENHVITILNPAPANKIPDELLKYTDIIIPNETEAATL 191 Query: 181 AGIAVNSVAEAEQAAHILLQKGVQNVIVTLGSKGALIVNKGGTLHIPGFPVQAVDTVAAG 240 GI V ++ + E+AA L KGV+ I+TLG KGA +V+ ++ +P + V+AVDT AAG Sbjct: 192 TGIEVTNLEDVEKAAKSFLSKGVKYSIITLGEKGAALVSNERSVIVPAYKVKAVDTTAAG 251 Query: 241 DSFNGALAWQLTQGK----TLAEAARFANAVGALAVGKQGAIPSLPYLPEVEQF 290 DSF GAL+ +L + TL EA +F N V ++ V K+GA PS+P++ ++E Sbjct: 252 DSFIGALSAKLDKKNVNFDTLIEAVKFGNKVSSIVVQKEGAQPSIPFINDIENI 305 >A7LW47.1 A7LW47_BACOV Putative uncharacterized protein Length = 304 Score = 212 bits (540), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 116/289 (40%), Positives = 168/289 (58%), Gaps = 2/289 (0%) Query: 2 DMVVRTSRAPNAGETLFGQGFALSPXXXXXXXXXXXXXXXXDVQMIGRVGRDTFGSELLE 61 DMV+++ R P GET+ G F ++ DV I ++G D FG+E LE Sbjct: 16 DMVIKSDRLPKPGETILGGNFLMNHGGKGANQAVAAARLGGDVTFICKIGNDIFGNETLE 75 Query: 62 VMRKEQINTEHIGQSETQTTGVASIVVDGEGENRIIVVPGANIEMGPADIAALEPVISQA 121 + KE+I+T ++G + + +GVA I VD +GEN I+V GAN + DI EP I QA Sbjct: 76 MFHKEKIDTTYVGITPQEPSGVALINVDKKGENCIVVASGANGTLSIDDIQNAEPAIKQA 135 Query: 122 EIVVMQLETDLXXXXXXXXXXXXXGIPVILNPAPA--RELDDEFLQHVTYLTPNETEAGI 179 IV+MQLET + GI VILNPAPA ++L D+ L +V L PN TEA I Sbjct: 136 SIVIMQLETPIESVTYAAKMAKKDGITVILNPAPAPTQQLPDDLLANVDILIPNVTEAEI 195 Query: 180 LAGIAVNSVAEAEQAAHILLQKGVQNVIVTLGSKGALIVNKGGTLHIPGFPVQAVDTVAA 239 ++G+ + A++A + KG++ VI+T+G+KGAL +HIP F V+AVDT AA Sbjct: 196 ISGMHITDDESAKEAIRYISSKGIKTVIITMGAKGALAYENNEFIHIPAFKVEAVDTTAA 255 Query: 240 GDSFNGALAWQLTQGKTLAEAARFANAVGALAVGKQGAIPSLPYLPEVE 288 GD+F G L L++GK L +A FA+ +++V + GA S+P E++ Sbjct: 256 GDTFCGGLCVALSEGKNLKDAIIFASKASSISVTRMGAQVSIPLRKEIQ 304 >A6LCJ5.1 A6LCJ5_PARD8 Ribokinase Length = 307 Score = 210 bits (534), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 115/289 (39%), Positives = 162/289 (56%) Query: 2 DMVVRTSRAPNAGETLFGQGFALSPXXXXXXXXXXXXXXXXDVQMIGRVGRDTFGSELLE 61 DMV++T+ P GET+ G F ++P V I + G D FG + + Sbjct: 18 DMVIKTNHLPRPGETVLGGTFFMNPGGKGANQAVAVARLGGQVSFICKTGSDIFGHQSQQ 77 Query: 62 VMRKEQINTEHIGQSETQTTGVASIVVDGEGENRIIVVPGANIEMGPADIAALEPVISQA 121 + +E I+T +I +GVA I VD EN I+V GAN + P+D+A E I +A Sbjct: 78 LFEEEGIDTSYIFSDPKNPSGVALITVDAHAENCIVVASGANANLLPSDLAKSEEAIEKA 137 Query: 122 EIVVMQLETDLXXXXXXXXXXXXXGIPVILNPAPARELDDEFLQHVTYLTPNETEAGILA 181 ++++MQLE + VILNPAPA+ L L+H+ +TPNETEA +++ Sbjct: 138 DLILMQLEIPMDTVEFVAKMASKKNKRVILNPAPAQTLSATLLRHLYMITPNETEAEMIS 197 Query: 182 GIAVNSVAEAEQAAHILLQKGVQNVIVTLGSKGALIVNKGGTLHIPGFPVQAVDTVAAGD 241 G+ + A++AA ++++ GVQNVIVTLGSKGALI +P V+AVDT AAGD Sbjct: 198 GVKITDEVSAKKAAQVIMEMGVQNVIVTLGSKGALIYCDSMVDMVPAIKVEAVDTTAAGD 257 Query: 242 SFNGALAWQLTQGKTLAEAARFANAVGALAVGKQGAIPSLPYLPEVEQF 290 FNGAL L +G+ L EA RFA A++V + GA S PY EV+ F Sbjct: 258 IFNGALTVALAEGRDLREAVRFACKASAISVTRVGAQSSAPYRNEVDIF 306 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.134 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,504,962,306 Number of extensions: 55857553 Number of successful extensions: 167603 Number of sequences better than 1.0e-05: 3329 Number of HSP's gapped: 165263 Number of HSP's successfully gapped: 3334 Length of query: 297 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 162 Effective length of database: 1,788,859,178 Effective search space: 289795186836 Effective search space used: 289795186836 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)