BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0057.0011.p
         (82 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C4EGF3.1 C4EGF3_STRRS Predicted transcriptional regulator              75   2e-12
C3BU79.1 C3BU79_9BACI MerR, DNA binding                                71   4e-11
Q2SWH0.1 Q2SWH0_BURTA Transcriptional regulator, MerR family           68   2e-10
C1DH89.1 C1DH89_AZOVD Transcriptional regulator, MerR family           67   4e-10
Q63UV9.1 Q63UV9_BURPS Putative MerR-family transcriptional regul...    66   8e-10

>C4EGF3.1 C4EGF3_STRRS Predicted transcriptional regulator
          Length = 140

 Score = 75.1 bits (183), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 50/73 (68%)

Query: 3   WVQFLVVLRELDIPIREMKRYSDLRGQGPSTVHERRLMLEAHRSRVEAQMRKLSGNLEKI 62
           W+ FL+ LR   +PI +M RY++LR +GP TV ERR MLE HR RV AQ+ +L+G+L+ +
Sbjct: 68  WLDFLIKLRATGMPIADMCRYAELRRRGPETVAERRRMLETHRERVRAQIAQLTGDLDVL 127

Query: 63  AGKIKYYKEMEEE 75
             KI +Y   E +
Sbjct: 128 DYKIDFYSAQEHQ 140


>C3BU79.1 C3BU79_9BACI MerR, DNA binding
          Length = 124

 Score = 70.9 bits (172), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 50/74 (67%)

Query: 1   VAWVQFLVVLRELDIPIREMKRYSDLRGQGPSTVHERRLMLEAHRSRVEAQMRKLSGNLE 60
           ++W+ FL+ LR   + + +MK +SDLR QG  T+  RR +LE H+++V  ++++L  NL 
Sbjct: 48  ISWINFLIRLRVTGMSVTDMKLFSDLRSQGEPTIRSRRELLEIHQNKVLKEIKELKDNLV 107

Query: 61  KIAGKIKYYKEMEE 74
           KI  KI YYK MEE
Sbjct: 108 KIEEKIDYYKGMEE 121


>Q2SWH0.1 Q2SWH0_BURTA Transcriptional regulator, MerR family
          Length = 190

 Score = 68.2 bits (165), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 49/79 (62%)

Query: 3   WVQFLVVLRELDIPIREMKRYSDLRGQGPSTVHERRLMLEAHRSRVEAQMRKLSGNLEKI 62
           W++F++ L+   +PI  M+ +++LR QG +T  ERR  L AHR  V AQ+  L  NL+ I
Sbjct: 84  WLRFVMRLKATGMPIAGMQAFAELRAQGDATFGERRACLAAHRDAVRAQIAALQANLDAI 143

Query: 63  AGKIKYYKEMEEEWVIKTN 81
             KI YY++ E + + +T 
Sbjct: 144 VDKIAYYEQAERDAMRQTG 162


>C1DH89.1 C1DH89_AZOVD Transcriptional regulator, MerR family
          Length = 156

 Score = 67.4 bits (163), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 53/80 (66%)

Query: 3   WVQFLVVLRELDIPIREMKRYSDLRGQGPSTVHERRLMLEAHRSRVEAQMRKLSGNLEKI 62
           W++FL+ LR   +PIR M+RY++LR QG +T+  RR +LE HR  V  ++ +L  +L  +
Sbjct: 50  WIEFLLRLRSTGMPIRRMQRYAELRRQGETTLAARRQLLEEHRQAVARRLDELGRSLAAL 109

Query: 63  AGKIKYYKEMEEEWVIKTNS 82
            GKI  Y+++E+E   + +S
Sbjct: 110 DGKIDIYRQLEDEVSARESS 129


>Q63UV9.1 Q63UV9_BURPS Putative MerR-family transcriptional regulator
          Length = 164

 Score = 66.2 bits (160), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 47/75 (62%)

Query: 3   WVQFLVVLRELDIPIREMKRYSDLRGQGPSTVHERRLMLEAHRSRVEAQMRKLSGNLEKI 62
           W++F++ L+   +PI  M+ +++LR QG +T  ERR +L AHR  V AQ+  L  NL+ I
Sbjct: 58  WLRFVMRLKATGMPIAGMQAFAELRAQGDATFGERRALLAAHRDAVRAQIGALQTNLDSI 117

Query: 63  AGKIKYYKEMEEEWV 77
             KI YY+  E + V
Sbjct: 118 VEKIAYYERAERDAV 132


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.319    0.134    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 477,863,781
Number of extensions: 14506092
Number of successful extensions: 47644
Number of sequences better than 1.0e-05: 88
Number of HSP's gapped: 47655
Number of HSP's successfully gapped: 88
Length of query: 82
Length of database: 3,060,696,203
Length adjustment: 52
Effective length of query: 30
Effective length of database: 2,570,803,423
Effective search space: 77124102690
Effective search space used: 77124102690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)