BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0057.0010.p (255 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B8FZR9.1 B8FZR9_DESHD Transcriptional regulator, MerR family 387 e-106 Q24PL3.1 Q24PL3_DESHY Putative uncharacterized protein 386 e-106 B3K4Y2.1 B3K4Y2_9BACI TipAS antibiotic-recognition domain protein 384 e-105 A8MM58.1 A8MM58_ALKOO Transcriptional regulator, MerR family 383 e-104 C1TE74.1 C1TE74_9FIRM Predicted transcriptional regulator 382 e-104 >B8FZR9.1 B8FZR9_DESHD Transcriptional regulator, MerR family Length = 254 Score = 387 bits (993), Expect = e-106, Method: Compositional matrix adjust. Identities = 181/251 (72%), Positives = 218/251 (86%) Query: 1 MEYTVQKLGALAGVSTRTLRYYDEIGILRPARINSSGYRIYGQAEVDRLQQILFYRELGL 60 MEYTVQKL LAGVS+RTLRYYDEIGIL+PARI+SSGYRIYGQ EVDRLQQILFYRELG+ Sbjct: 1 MEYTVQKLAHLAGVSSRTLRYYDEIGILKPARISSSGYRIYGQQEVDRLQQILFYRELGM 60 Query: 61 SLEGIKELVTAPSFDGARALREHHEKLLQRKQQLEMLILNVEKTLAQAEGRITMSNEEKF 120 SLEGIK++VT+P FDGA+ALREH EKLL++++QLE LI NVEKT+AQ EGRITMS++EKF Sbjct: 61 SLEGIKDMVTSPDFDGAKALREHREKLLEKREQLEQLIANVEKTIAQKEGRITMSDKEKF 120 Query: 121 AGFKQKLIDDNEQKYGQEIREKYGEKAVEKSNRRLKNMTEEQHAAIQQVEAEMFSVLEQA 180 GFK+K+I++NE KYG+EIREKYGE+ VE+SNR+L NMT+EQ+A ++ E+ L +A Sbjct: 121 EGFKRKMIEENEAKYGEEIREKYGEETVEESNRKLMNMTQEQYAEFTKLGEEVLVTLCEA 180 Query: 181 MEDGDPASVLAQKAADLHRQWLTFHWDTYSKEAHAGVAQMYVDDERFTAYYDKTRPGTAK 240 + GDPA LAQK ADLHRQWLT+ W +YSKEAHAG+AQMYVDD RFTAYYD+ +PG A+ Sbjct: 181 FKTGDPAGELAQKTADLHRQWLTYSWPSYSKEAHAGLAQMYVDDPRFTAYYDEKQPGAAE 240 Query: 241 FLRDAVHVYAG 251 FLRDAV +Y G Sbjct: 241 FLRDAVFIYTG 251 >Q24PL3.1 Q24PL3_DESHY Putative uncharacterized protein Length = 254 Score = 386 bits (992), Expect = e-106, Method: Compositional matrix adjust. Identities = 181/254 (71%), Positives = 220/254 (86%) Query: 1 MEYTVQKLGALAGVSTRTLRYYDEIGILRPARINSSGYRIYGQAEVDRLQQILFYRELGL 60 MEYTVQKL LAGVS+RTLRYYDEIGIL+PARI+SSGYRIYGQ EVDRLQQILFYRELG+ Sbjct: 1 MEYTVQKLAHLAGVSSRTLRYYDEIGILKPARISSSGYRIYGQQEVDRLQQILFYRELGM 60 Query: 61 SLEGIKELVTAPSFDGARALREHHEKLLQRKQQLEMLILNVEKTLAQAEGRITMSNEEKF 120 SLEGIK++VT+P FDGA+ALREH EKLL++++QLE LI NVEKT+AQ EGRITMS++EKF Sbjct: 61 SLEGIKDMVTSPDFDGAKALREHREKLLEKREQLEQLIANVEKTIAQKEGRITMSDKEKF 120 Query: 121 AGFKQKLIDDNEQKYGQEIREKYGEKAVEKSNRRLKNMTEEQHAAIQQVEAEMFSVLEQA 180 GFK+K+I++NE KYG+EIREKYGE+ VE+SNR+L NMT+EQ+A ++ E+ L +A Sbjct: 121 EGFKRKMIEENEAKYGEEIREKYGEETVEESNRKLMNMTQEQYAEFTKLGEEVLVTLCKA 180 Query: 181 MEDGDPASVLAQKAADLHRQWLTFHWDTYSKEAHAGVAQMYVDDERFTAYYDKTRPGTAK 240 + GDPA LAQK ADLHRQWLT+ W +YSKEAHAG+AQMYVDD RFTAYYD+ +PG A+ Sbjct: 181 FKTGDPAGELAQKTADLHRQWLTYSWPSYSKEAHAGLAQMYVDDPRFTAYYDEKQPGAAE 240 Query: 241 FLRDAVHVYAGTEQ 254 FLRDAV +Y G ++ Sbjct: 241 FLRDAVFIYTGMKK 254 >B3K4Y2.1 B3K4Y2_9BACI TipAS antibiotic-recognition domain protein Length = 256 Score = 384 bits (985), Expect = e-105, Method: Compositional matrix adjust. Identities = 176/251 (70%), Positives = 219/251 (87%) Query: 1 MEYTVQKLGALAGVSTRTLRYYDEIGILRPARINSSGYRIYGQAEVDRLQQILFYRELGL 60 MEYTVQKLG LAG+STRTLRYYDEIGIL+PARINSSGYRIYGQ EVD+LQQILFYRELGL Sbjct: 1 MEYTVQKLGKLAGISTRTLRYYDEIGILKPARINSSGYRIYGQEEVDQLQQILFYRELGL 60 Query: 61 SLEGIKELVTAPSFDGARALREHHEKLLQRKQQLEMLILNVEKTLAQAEGRITMSNEEKF 120 L+GIKE++T+PSF+ +AL+EHH +LL +++QL++LI NVE T+A AEGR TMS++EKF Sbjct: 61 QLDGIKEIMTSPSFNRTKALQEHHAQLLDKRRQLDLLITNVENTIASAEGRKTMSDQEKF 120 Query: 121 AGFKQKLIDDNEQKYGQEIREKYGEKAVEKSNRRLKNMTEEQHAAIQQVEAEMFSVLEQA 180 GFKQKLIDDNE+KYG+EIREKYG++ V +SN +LKNMT+ QH + ++ E++ L +A Sbjct: 121 EGFKQKLIDDNEKKYGKEIREKYGDETVNQSNAKLKNMTQAQHDEVTRLAEELYETLAEA 180 Query: 181 MEDGDPASVLAQKAADLHRQWLTFHWDTYSKEAHAGVAQMYVDDERFTAYYDKTRPGTAK 240 + GDPA LAQKAADLH++WLTF+W+ YSKEAHAG+AQMYVDDERFTA+YD+ +PGTAK Sbjct: 181 FKQGDPAGELAQKAADLHKRWLTFYWNEYSKEAHAGLAQMYVDDERFTAHYDEKQPGTAK 240 Query: 241 FLRDAVHVYAG 251 FLRDA+ +Y G Sbjct: 241 FLRDAILIYTG 251 >A8MM58.1 A8MM58_ALKOO Transcriptional regulator, MerR family Length = 254 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 178/254 (70%), Positives = 220/254 (86%) Query: 1 MEYTVQKLGALAGVSTRTLRYYDEIGILRPARINSSGYRIYGQAEVDRLQQILFYRELGL 60 MEYTVQ+LG LAGVSTRTLRYYDEIGIL+PARINSSGYRIYG+ EVD+LQQILFYRELGL Sbjct: 1 MEYTVQRLGNLAGVSTRTLRYYDEIGILKPARINSSGYRIYGETEVDQLQQILFYRELGL 60 Query: 61 SLEGIKELVTAPSFDGARALREHHEKLLQRKQQLEMLILNVEKTLAQAEGRITMSNEEKF 120 SLE IKE++TAPSF G AL+EHH LL++++QL+ LI NVEK++A +EGRI MS++EKF Sbjct: 61 SLERIKEIITAPSFSGVHALKEHHRSLLEKRKQLDTLIANVEKSIANSEGRIQMSDQEKF 120 Query: 121 AGFKQKLIDDNEQKYGQEIREKYGEKAVEKSNRRLKNMTEEQHAAIQQVEAEMFSVLEQA 180 GFKQK+I+DNE+KYG+EIR+KYG++A+ +SN +LKNMTE+++ I + E+ VL +A Sbjct: 121 EGFKQKMIEDNEKKYGKEIRKKYGDEAINQSNAKLKNMTEKEYEEITNLTEEVHRVLAEA 180 Query: 181 MEDGDPASVLAQKAADLHRQWLTFHWDTYSKEAHAGVAQMYVDDERFTAYYDKTRPGTAK 240 E GDPA LAQKAA LH++WLTF+W YSKEAHAG+AQMYVDDERFTAYYDK +PGTA+ Sbjct: 181 FETGDPAGELAQKAAALHKKWLTFYWREYSKEAHAGLAQMYVDDERFTAYYDKHQPGTAE 240 Query: 241 FLRDAVHVYAGTEQ 254 FLRDA+ +Y GTE+ Sbjct: 241 FLRDAILIYTGTEK 254 >C1TE74.1 C1TE74_9FIRM Predicted transcriptional regulator Length = 254 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 176/251 (70%), Positives = 215/251 (85%) Query: 1 MEYTVQKLGALAGVSTRTLRYYDEIGILRPARINSSGYRIYGQAEVDRLQQILFYRELGL 60 MEYTVQKLG LAG+STRTLRYYDEIGIL+P RINSSGYRIYGQAEV+RLQQILFY+ELGL Sbjct: 1 MEYTVQKLGRLAGISTRTLRYYDEIGILKPTRINSSGYRIYGQAEVNRLQQILFYKELGL 60 Query: 61 SLEGIKELVTAPSFDGARALREHHEKLLQRKQQLEMLILNVEKTLAQAEGRITMSNEEKF 120 SL+ IK++VT+PSF+ A AL+EH EKLL++++QL++LI NVEKT+ EG M++ EKF Sbjct: 61 SLDNIKDIVTSPSFNEAEALKEHREKLLEKRKQLDLLIANVEKTIGLTEGGRNMTDREKF 120 Query: 121 AGFKQKLIDDNEQKYGQEIREKYGEKAVEKSNRRLKNMTEEQHAAIQQVEAEMFSVLEQA 180 GFKQKLIDDNE+KYG+EIREKYG + V KSN +LKNMTEE+HA + ++E E+ + L +A Sbjct: 121 EGFKQKLIDDNEKKYGKEIREKYGNEIVNKSNEKLKNMTEEEHAEVTRLENEVTAALAEA 180 Query: 181 MEDGDPASVLAQKAADLHRQWLTFHWDTYSKEAHAGVAQMYVDDERFTAYYDKTRPGTAK 240 E GDPA +AQKAADLH+QWLT+ W Y+KEAHAG+AQMYVDDERF AYYDK +PG A+ Sbjct: 181 FETGDPACDIAQKAADLHKQWLTYFWSEYNKEAHAGLAQMYVDDERFKAYYDKKQPGVAE 240 Query: 241 FLRDAVHVYAG 251 FLRDA+H+Y G Sbjct: 241 FLRDAIHIYTG 251 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.131 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,428,575,480 Number of extensions: 55851076 Number of successful extensions: 231363 Number of sequences better than 1.0e-05: 1416 Number of HSP's gapped: 232335 Number of HSP's successfully gapped: 1416 Length of query: 255 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 122 Effective length of database: 1,807,701,208 Effective search space: 220539547376 Effective search space used: 220539547376 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)