BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0057.0008.p
         (121 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C2XWS1.1 C2XWS1_BACCE Putative uncharacterized protein                136   6e-31
A4IRR4.1 A4IRR4_GEOTN Putative uncharacterized protein                132   8e-30
B4BPP5.1 B4BPP5_9BACI Putative uncharacterized protein                132   8e-30
C3A8N3.1 C3A8N3_BACMY Putative uncharacterized protein                128   2e-28
A9VMT6.1 A9VMT6_BACWK Putative uncharacterized protein                128   2e-28

>C2XWS1.1 C2XWS1_BACCE Putative uncharacterized protein
          Length = 119

 Score =  136 bits (343), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 62/117 (52%), Positives = 87/117 (74%)

Query: 1   MMNVASLSKHICGLEEKLLTPEVRTSPQQLGLLLADEFVEYGSSGRVWHKKDLMGEEGAG 60
           M   +SL + +  LEE+LL PEVRTS ++L  +LAD+F E+GSSG+V +K + + + G G
Sbjct: 1   MEGFSSLRECLYQLEERLLKPEVRTSQKELKKILADDFFEFGSSGKVLYKNEDIDKNGIG 60

Query: 61  MVELTLSEFALHPLSEDAVLATYKTLNAKNGGYTLRSSIWRCRDGLWQMLFHQGTPA 117
           +V++TLS+F +HPLS+D VL TY+  N  N  ++LRSSIW+ R+G WQM FHQGTPA
Sbjct: 61  VVKMTLSDFEVHPLSKDVVLTTYRIFNEINNQHSLRSSIWKFREGRWQMYFHQGTPA 117


>A4IRR4.1 A4IRR4_GEOTN Putative uncharacterized protein
          Length = 120

 Score =  132 bits (333), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 61/115 (53%), Positives = 80/115 (69%)

Query: 1   MMNVASLSKHICGLEEKLLTPEVRTSPQQLGLLLADEFVEYGSSGRVWHKKDLMGEEGAG 60
           M N  +L +H+  LEE+LL P +RT+P +L  LLAD+F E+GSSG VW+KKD +GE G  
Sbjct: 1   MENHFALKEHLQQLEERLLDPNIRTTPAELEKLLADDFFEFGSSGNVWYKKDFVGEGGLS 60

Query: 61  MVELTLSEFALHPLSEDAVLATYKTLNAKNGGYTLRSSIWRCRDGLWQMLFHQGT 115
             E+TL +F +HPL+E  VL TY+  +     +TLRSSIW+  DG WQM FHQGT
Sbjct: 61  ATEMTLYDFHIHPLTEHVVLTTYRVKDETRRQHTLRSSIWKQVDGRWQMFFHQGT 115


>B4BPP5.1 B4BPP5_9BACI Putative uncharacterized protein
          Length = 120

 Score =  132 bits (333), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 61/115 (53%), Positives = 80/115 (69%)

Query: 1   MMNVASLSKHICGLEEKLLTPEVRTSPQQLGLLLADEFVEYGSSGRVWHKKDLMGEEGAG 60
           M N  +L +H+  LEE+LL P +RT+P +L  LLAD+F E+GSSG VW+KKD +GE G  
Sbjct: 1   MENHFALKEHLQQLEERLLDPNIRTTPAELEKLLADDFFEFGSSGNVWYKKDFVGEGGLS 60

Query: 61  MVELTLSEFALHPLSEDAVLATYKTLNAKNGGYTLRSSIWRCRDGLWQMLFHQGT 115
             E+TL +F +HPL+E  VL TY+  +     +TLRSSIW+  DG WQM FHQGT
Sbjct: 61  ATEMTLYDFHIHPLTEHVVLTTYRVKDETRRQHTLRSSIWKQVDGRWQMFFHQGT 115


>C3A8N3.1 C3A8N3_BACMY Putative uncharacterized protein
          Length = 119

 Score =  128 bits (321), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 59/117 (50%), Positives = 85/117 (72%)

Query: 1   MMNVASLSKHICGLEEKLLTPEVRTSPQQLGLLLADEFVEYGSSGRVWHKKDLMGEEGAG 60
           M  ++SL + +  LEE+LL P VRTS ++L  +LA +F E+GSSG+V +K + + + G G
Sbjct: 1   MEGLSSLRECLYQLEERLLKPGVRTSQKELKKILAADFFEFGSSGKVLYKNEDIDKNGIG 60

Query: 61  MVELTLSEFALHPLSEDAVLATYKTLNAKNGGYTLRSSIWRCRDGLWQMLFHQGTPA 117
           +V++TLS+F +HPLS+D  L TY+  N  N  ++LRSSIW+ R+G WQM FHQGTPA
Sbjct: 61  VVKMTLSDFEVHPLSKDVALTTYQIFNEMNNQHSLRSSIWKFREGRWQMYFHQGTPA 117


>A9VMT6.1 A9VMT6_BACWK Putative uncharacterized protein
          Length = 119

 Score =  128 bits (321), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 59/117 (50%), Positives = 85/117 (72%)

Query: 1   MMNVASLSKHICGLEEKLLTPEVRTSPQQLGLLLADEFVEYGSSGRVWHKKDLMGEEGAG 60
           M  ++SL + +  LEE+LL P VRTS ++L  +LA +F E+GSSG+V +K + + + G G
Sbjct: 1   MEGLSSLRECLYQLEERLLKPGVRTSQKELKKILAADFFEFGSSGKVLYKNEDIDKSGIG 60

Query: 61  MVELTLSEFALHPLSEDAVLATYKTLNAKNGGYTLRSSIWRCRDGLWQMLFHQGTPA 117
           +V++TLS+F +HPLS+D  L TY+  N  N  ++LRSSIW+ R+G WQM FHQGTPA
Sbjct: 61  VVKMTLSDFEVHPLSKDVALTTYRIFNEINNQHSLRSSIWKFREGRWQMYFHQGTPA 117


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.317    0.133    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 757,220,579
Number of extensions: 28365673
Number of successful extensions: 54227
Number of sequences better than 1.0e-05: 72
Number of HSP's gapped: 54174
Number of HSP's successfully gapped: 72
Length of query: 121
Length of database: 3,060,696,203
Length adjustment: 87
Effective length of query: 34
Effective length of database: 2,241,067,898
Effective search space: 76196308532
Effective search space used: 76196308532
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)