BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0057.0002.p (448 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DAF3.1 B1DAF3_9BACL Transcriptional regulator, AraC family 400 e-109 B1DGV3.1 B1DGV3_9BACL Extracellular solute-binding protein family 1 343 3e-92 B3KAR3.1 B3KAR3_9BACI Extracellular solute-binding protein family 1 325 6e-87 A3YGZ2.1 A3YGZ2_9GAMM Probable sugar transport system sugar-bind... 268 1e-69 C2I9S8.1 C2I9S8_VIBCH Putative uncharacterized protein 267 2e-69 >B1DAF3.1 B1DAF3_9BACL Transcriptional regulator, AraC family Length = 852 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 198/384 (51%), Positives = 266/384 (69%), Gaps = 3/384 (0%) Query: 65 ISGKITFLTNRTDMIGKEYDEYVKRFNEKYPNIKVEFEASQTDYNQQAKVRMASGELPDI 124 I+GK+ F TNRTD++ E Y +F+EKYP+ VE EA + DY+Q K+RMAS EL DI Sbjct: 470 IAGKVVFTTNRTDLVDTELKNYAAKFHEKYPDATVEIEAIK-DYDQTTKIRMASNELADI 528 Query: 125 MFIP-TVPNSDLTKYFAPLDDLGLNDQITFKDFKSYDGKLYGITTGNSTSGIVYNKKAFA 183 IP TV NSDL ++ PLDDLGLND+I FKD +S DGKLYGI++G++ G+ YNKKAFA Sbjct: 529 SLIPGTVKNSDLPNFYLPLDDLGLNDRIYFKDNRSQDGKLYGISSGSAAMGVTYNKKAFA 588 Query: 184 DAGITEVPKTWDEFLAACEKLKAKGIIPLASNFKDKWPLNNWVYDMPRVIEGKAEFPNEK 243 AGITEVPKT DE AA EKLKA GIIPLA+NFKDKWPL W + + N Sbjct: 589 QAGITEVPKTLDELYAAAEKLKAAGIIPLATNFKDKWPLYGWDQE-AFIFANDPSLHNTM 647 Query: 244 LNQEAPFTMDNGYGKAFSLLRELNEKGYLEKDINSTNWEQSKKDIAAGKFGMYFLGNWVI 303 Q+ PF +D + +AFS+L+++ + GY+EKD+ STNWE SKKD+A+GK M+ LGNWV+ Sbjct: 648 ATQDEPFAVDGPHWQAFSILKKMVDGGYVEKDLMSTNWEGSKKDVASGKIAMFLLGNWVV 707 Query: 304 NQVINAGTTSDNVGFFPLPYDNSGTTTAALSPDFFYAVSKDSKNVDAAKAFVKWMIEESG 363 QV++ G +++VGFFPLP DNSG L+ D++Y + K+S+N + AKAF+K++IEESG Sbjct: 708 PQVVDNGAAAEDVGFFPLPLDNSGEAKVILASDYYYGIDKNSENPETAKAFLKFLIEESG 767 Query: 364 YEDFAGFLSPLKGKESKLPQIQEFQATGVQLQEATPDEAKVTEIGNKAQVDLPAMLQEFV 423 Y+D+AGF+ LK K+ KL Q+ EF AT ++ E + I NK Q D A Q+ + Sbjct: 768 YDDYAGFIPVLKDKKPKLAQLNEFMATNPKVIEMAAENDDYLAIANKMQFDTSAFAQDAI 827 Query: 424 LAKDPQSVLEKWNKAWAKSKKDLG 447 + KD ++V + +NK W +KK LG Sbjct: 828 MGKDMKAVFDSYNKKWKDAKKALG 851 >B1DGV3.1 B1DGV3_9BACL Extracellular solute-binding protein family 1 Length = 447 Score = 343 bits (879), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 180/389 (46%), Positives = 251/389 (64%), Gaps = 6/389 (1%) Query: 64 DISGKITFLTNRTDMIGK-EYDEYVKRFNEKYPNIKVEFEASQTDYNQQAKVRMASGELP 122 D+SG I LT RTD + +D Y +F EKYPN K+EFE T+Y +VR+ +GE Sbjct: 61 DLSGTIKVLTQRTDYVNDGTFDRYAAKFKEKYPNAKIEFEG-LTNYATDIQVRLTTGEAG 119 Query: 123 DIMFIPT-VPNSDLTKYFAPLDDLGLNDQITFKDFKSYDGKLYGITTGNSTSGIVYNKKA 181 D++ IP + S+ +KYF PL D N+ + F D +DGK YG++TG +T GIVYNKKA Sbjct: 120 DVLMIPAGLATSEYSKYFEPLPDEWFNN-VYFADNTLFDGKRYGLSTGVNTQGIVYNKKA 178 Query: 182 FADAGITEVPKTWDEFLAACEKLKAKGIIPLASNFKDKWPLNNWVYDMPRVIEGKAEFPN 241 FA AGI +VP T DE A EKLKA I PL N+ +WP+ NW + G +F Sbjct: 179 FAAAGIDKVPTTLDELYADAEKLKAAKITPLYMNYGAQWPMGNWGDGSAWYVNGDPQFAT 238 Query: 242 EKLNQEAPFTMDNGYGKAFSLLRELNEKGYLEKDINSTNWEQSKKDIAAGKFGMYFLGNW 301 ++++++APF +DN +G ++ R EKGY+EKD+ + NWE SK ++A+GK MYFLGNW Sbjct: 239 KQVSEDAPFQLDNAWGTLATIGRTFVEKGYVEKDLYTNNWEMSKGEVASGKAAMYFLGNW 298 Query: 302 VINQVINAGTTSDNVGFFPLPYDNSGTTTAALSPDFFYAVSKDSKNVDAAKAFVKWMIEE 361 VI Q+I AG S+++GFFPLPYDNSG A L D+F AVSKDSKN + AKA+V++ ++E Sbjct: 299 VIPQIIGAGAASEDIGFFPLPYDNSGKYNAPLGSDYFVAVSKDSKNKELAKAWVEFFVKE 358 Query: 362 SGYEDFAGFLSPLKGKESKLPQIQEFQATGVQLQEATPDEAKVTEIGNKAQVDLPA--ML 419 SGY + +GF+ K +S +PQ+ EFQA L E+ + K EI NKAQ+ + + Sbjct: 359 SGYVEDSGFMPIDKSAQSSIPQLAEFQALNPTLIESEATDPKYNEIANKAQIGIGTGDYV 418 Query: 420 QEFVLAKDPQSVLEKWNKAWAKSKKDLGY 448 QE+++A D ++ +K NK W +K LGY Sbjct: 419 QEYIVADDLKAAFDKLNKKWKDAKTALGY 447 >B3KAR3.1 B3KAR3_9BACI Extracellular solute-binding protein family 1 Length = 438 Score = 325 bits (833), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 173/389 (44%), Positives = 249/389 (64%), Gaps = 6/389 (1%) Query: 64 DISGKITFLTNRTDMIGK-EYDEYVKRFNEKYPNIKVEFEASQTDYNQQAKVRMASGELP 122 ++ GK+ LT+RTD++ D+YV+ F KYP ++EFE T+Y +VR+ +GE Sbjct: 52 ELGGKLKVLTHRTDLVNDGTLDKYVEAFKAKYPKAEIEFEG-LTNYATDIQVRLTTGEAG 110 Query: 123 DIMFIPT-VPNSDLTKYFAPLDDLGLNDQITFKDFKSYDGKLYGITTGNSTSGIVYNKKA 181 D++ IPT + S+ KYF PL D D + F D ++GK YGI+TG +T GIVYNKKA Sbjct: 111 DVLMIPTGLATSEYGKYFEPLPDTMFED-VYFADNTLFEGKRYGISTGVNTQGIVYNKKA 169 Query: 182 FADAGITEVPKTWDEFLAACEKLKAKGIIPLASNFKDKWPLNNWVYDMPRVIEGKAEFPN 241 F AG+ +VP T DE AA EKLKA IIPL NF +W + NW + + G +F + Sbjct: 170 FQAAGVDKVPTTLDELYAAAEKLKAADIIPLYMNFGAQWTMGNWADNSAWYVNGDPQFAS 229 Query: 242 EKLNQEAPFTMDNGYGKAFSLLRELNEKGYLEKDINSTNWEQSKKDIAAGKFGMYFLGNW 301 +++ +EAPF +DN +G ++ R +K ++EKD+ + NWE SK ++A+GK MYFLGNW Sbjct: 230 KQVAEEAPFQVDNAWGILANIGRTFVQKEWVEKDLYTNNWEISKGEMASGKAAMYFLGNW 289 Query: 302 VINQVINAGTTSDNVGFFPLPYDNSGTTTAALSPDFFYAVSKDSKNVDAAKAFVKWMIEE 361 VI QVI AG S+++GFFPLPYDNSG A L D+F AVSKDSK+ + A A+V + ++E Sbjct: 290 VIPQVIGAGAASEDIGFFPLPYDNSGKYNAPLGSDYFIAVSKDSKSKELATAWVDFFVKE 349 Query: 362 SGYEDFAGFLSPLKGKESKLPQIQEFQATGVQLQEATPDEAKVTEIGNKAQVDLPA--ML 419 SGY + +GF+ +K ES + Q+ EFQ+ L E+ + K EI NKAQ+ + + Sbjct: 350 SGYVEDSGFMPIIKSAESSISQLAEFQSFNPTLIESEATDPKFNEIANKAQIGIGTGDYV 409 Query: 420 QEFVLAKDPQSVLEKWNKAWAKSKKDLGY 448 QE+++A D Q+ +K N W ++K LGY Sbjct: 410 QEYIVADDLQAAFDKLNAKWKEAKTALGY 438 >A3YGZ2.1 A3YGZ2_9GAMM Probable sugar transport system sugar-binding lipoprotein Length = 422 Score = 268 bits (684), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 145/387 (37%), Positives = 227/387 (58%), Gaps = 6/387 (1%) Query: 64 DISGKITFLTNRTDMI-GKEYDEYVKRFNEKYPNIKVEFEASQTDYNQQAKVRMASGELP 122 ++ G+ITF TNRTD++ YD Y F + YP + DY + RM +G+ Sbjct: 36 EVKGEITFFTNRTDLVEAGVYDRYTNEFRKMYPGVTSVKVIGFADYQGGVRPRMNTGDYG 95 Query: 123 DIMFI-PTVPNSDLTKYFAPLDDLGLNDQITFKDFKSYDGKLYGITTGNSTSGIVYNKKA 181 D++ I P+VP+ ++ PLD + D+I F D S +GK+YG++ GN G+VYNK Sbjct: 96 DVVLILPSVPSEQYGNFYEPLD-MYNPDEIYFHDAWSNEGKMYGVSMGNVVEGLVYNKDV 154 Query: 182 FADAGITEVPKTWDEFLAACEKLKAKGIIPLASNFKDKWPLNNWVYDMPRVIEGKAEFPN 241 A+AG+ KT E AA EK+ IP NF +WPL W P V+EG + Sbjct: 155 LAEAGVKTPLKTTSELYAASEKIANLNKIPFYVNFGAQWPLQQWD-KYPIVLEGNSGVYE 213 Query: 242 EKLNQEAPFTMDNGYGKAFSLLRELNEKGYLEKDINSTNWEQSKKDIAAGKFGMYFLGNW 301 + L Q+ F D Y K+ SLL+ L +KG+ EKD+ + +WE+SK +A G GM++LGNW Sbjct: 214 KMLTQDKAFFGDTAYHKSLSLLKTLIDKGWTEKDLITNSWEESKSILAEGNAGMFYLGNW 273 Query: 302 VINQVINAGTTSDNVGFFPLPYDNSGTTTAALSPDFFYAVSKDSKNVDAAKAFVKWMIEE 361 I QVI+ G +S+ +GF P+P SG A ++ D+ YAVSK SK+ AAKA++K+++E+ Sbjct: 274 FIPQVIDRGISSEKIGFMPIPAGESGELRAQMNHDWGYAVSKHSKSKPAAKAYIKFILEK 333 Query: 362 SGYEDFAGFLSPLKGKESKLPQIQEFQATGVQLQEATPDEAKVTEIGNKAQVDL--PAML 419 S +++ AGF+ +K KES LPQ+ EF + ++ + + + E+ N++Q+D + Sbjct: 334 SDFDELAGFIPTIKAKESTLPQLNEFMSYNPEIIQTPTNSSTFIEVTNRSQIDFYSGGYI 393 Query: 420 QEFVLAKDPQSVLEKWNKAWAKSKKDL 446 Q+ + A D + L+K + W ++KK + Sbjct: 394 QDVMTAPDFDNALKKLDGRWNRAKKRV 420 >C2I9S8.1 C2I9S8_VIBCH Putative uncharacterized protein Length = 424 Score = 267 bits (682), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 148/387 (38%), Positives = 224/387 (57%), Gaps = 7/387 (1%) Query: 65 ISGKITFLTNRTDMI-GKEYDEYVKRFNEKYPNIKVEFEASQTDYNQQAKVRMASGELPD 123 + G ITF TNRTD++ Y Y K F + YPN+ DY + RM +G+ D Sbjct: 38 VKGSITFYTNRTDLVEAGVYKRYEKEFKDIYPNVTEVKVIGFADYQGGLRPRMNTGDYGD 97 Query: 124 IMFI-PTVPNSDLTKYFAPLDDLGLNDQITFKDFKSYDGKLYGITTGNSTSGIVYNKKAF 182 ++ I P+VP+ ++ PL+ L +Q+ F D +G YGI+ GNS G+VYNK+ Sbjct: 98 LVLILPSVPSEQYGNFYEPLNALYSPEQVYFYDAWENNGNAYGISMGNSVEGLVYNKEVL 157 Query: 183 ADAGITEVP-KTWDEFLAACEKLKAKGIIPLASNFKDKWPLNNWVYDMPRVIEGKAEFPN 241 AG+ EVP KT +F A +K+KA G IPL NF +WPL W P V+EG Sbjct: 158 EKAGV-EVPIKTLSDFFDAAQKIKANGQIPLYINFGAQWPLQQWD-KFPLVVEGNDGVYE 215 Query: 242 EKLNQEAPFTMDNGYGKAFSLLRELNEKGYLEKDINSTNWEQSKKDIAAGKFGMYFLGNW 301 L Q+ PF+ D Y K+ S+L++L + G EKD+ + +WE SK IA G GMY+LGNW Sbjct: 216 RMLTQDKPFSGDTAYNKSLSVLKKLIDDGLTEKDLMTNSWEDSKNAIAKGDAGMYYLGNW 275 Query: 302 VINQVINAGTTSDNVGFFPLPYDNSGTTTAALSPDFFYAVSKDSKNVDAAKAFVKWMIEE 361 VI QVI G S+N+GF P+P ++ G A ++ D+ YAVSK S N + AKA++K++IE+ Sbjct: 276 VIPQVIERGAASNNIGFMPMPSNDKGELNAQMNHDWGYAVSKFSNNKETAKAYLKYLIED 335 Query: 362 SGYEDFAGFLSPLKGKESKLPQIQEFQATGVQLQEATPDEAKVTEIGNKAQVDL--PAML 419 S +E AGF+ LK K+ L Q+ E+ + + + + + E+ N++++D + Sbjct: 336 SDFEKIAGFIPTLKSKKPSLEQLNEYMSYEPNVIQTPVNSSTFIEVTNRSKIDFYSGGYI 395 Query: 420 QEFVLAKDPQSVLEKWNKAWAKSKKDL 446 Q+ + +K+ LEK + W ++KK + Sbjct: 396 QDVITSKNFNEALEKLDSRWERAKKRV 422 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.133 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,510,764,039 Number of extensions: 107389553 Number of successful extensions: 217281 Number of sequences better than 1.0e-05: 1218 Number of HSP's gapped: 216880 Number of HSP's successfully gapped: 1219 Length of query: 448 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 309 Effective length of database: 1,751,175,118 Effective search space: 541113111462 Effective search space used: 541113111462 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 133 (55.8 bits)