BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0056.0004.p (226 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A9U7E8.1 A9U7E8_PHYPA Predicted protein 180 1e-43 B3KDI3.1 B3KDI3_9BACI Putative uncharacterized protein 114 5e-24 B1DH29.1 B1DH29_9BACL Putative uncharacterized protein 114 9e-24 B9E5P0.1 B9E5P0_CLOK1 Putative uncharacterized protein 63 2e-08 A5N1Y6.1 A5N1Y6_CLOK5 Putative uncharacterized protein 63 2e-08 >A9U7E8.1 A9U7E8_PHYPA Predicted protein Length = 272 Score = 180 bits (456), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 98/211 (46%), Positives = 128/211 (60%) Query: 13 IVRMIEDMTAMVAKVMTLKQEKKTTEALWEVDELLIRHFXXXXXXXXXXXVEDIIDMYLL 72 + RM+EDM MV KV LKQ+KK EALWE+D+LL ++F VEDIIDM+ L Sbjct: 62 LARMVEDMVEMVGKVFGLKQQKKYAEALWEIDDLLSKNFRLNTRLLNSLSVEDIIDMFRL 121 Query: 73 GGVVESDKLQGVARLLKEEGAIYTAAGDKDAGLFRAMRSLHLFLYADLHGADRTLLQMPA 132 G VE+DKLQ VARLL+EEG +Y G+ D L R M+SLHL+LYADL+GA R++LQ+ Sbjct: 122 SGGVEADKLQTVARLLQEEGGVYKDMGEADEALRRFMKSLHLYLYADLNGAQRSMLQLQD 181 Query: 133 DIDELLRETQAYSLPAKTERLLLSYMESLGRYAKAEDSLYRLWEQGEDVVQEGKELYSRX 192 + EL E + Y LP KTE++LLSY E GR+ +AE+ L+RL Q E +EG Y R Sbjct: 182 RVAELKDEVKGYRLPVKTEKILLSYEEKEGRFDEAENVLFRLLNQREITEEEGVSFYERL 241 Query: 193 XXXXXXXXXXXXXXXXXVRDGLKEWERRTAA 223 V +G++ RR A Sbjct: 242 LEREDEALNQGGLPRSEVLEGMETLRRRINA 272 >B3KDI3.1 B3KDI3_9BACI Putative uncharacterized protein Length = 243 Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 78/218 (35%), Positives = 112/218 (51%), Gaps = 1/218 (0%) Query: 3 GVCNMFRRDYIVRMIEDMTAMVAKVMTLKQEKKTTEALWEVDELLIRHFXXXXXXXXXXX 62 G C MFRRDY+VR+IEDMT M+AKV +LKQE+K TEALWE+DEL R F Sbjct: 11 GEC-MFRRDYLVRLIEDMTQMIAKVFSLKQERKHTEALWELDELFKRQFRLNSGLLRSLS 69 Query: 63 VEDIIDMYLLGGVVESDKLQGVARLLKEEGAIYTAAGDKDAGLFRAMRSLHLFLYADLHG 122 DI ++ G +E+DKLQ ARL++EE ++ ++ + + L+L + L G Sbjct: 70 AADIEQLFRNHGYLEADKLQSAARLMEEEASLLLELEREEEAVMLYTKVFQLYLKSALQG 129 Query: 123 ADRTLLQMPADIDELLRETQAYSLPAKTERLLLSYMESLGRYAKAEDSLYRLWEQGEDVV 182 AD L+ + I L +AY+ P +Y E G +A+AE++LY+L + + Sbjct: 130 ADPKLIGLTERIGLLKERLRAYAWPETAMLDYYAYTEQQGMFAEAENTLYQLLDSRKIEY 189 Query: 183 QEGKELYSRXXXXXXXXXXXXXXXXXXVRDGLKEWERR 220 EG Y R V +G+ E RR Sbjct: 190 DEGVRFYQRLQQKRPEDLAKGGLPLEEVEEGMDELRRR 227 >B1DH29.1 B1DH29_9BACL Putative uncharacterized protein Length = 215 Score = 114 bits (284), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 65/185 (35%), Positives = 105/185 (56%) Query: 7 MFRRDYIVRMIEDMTAMVAKVMTLKQEKKTTEALWEVDELLIRHFXXXXXXXXXXXVEDI 66 MFRRDY++ MIE MT V +++ LK+E K +AL +DELL + F +D+ Sbjct: 1 MFRRDYLMNMIEQMTEAVGQILQLKRELKHQDALLVIDELLDKRFGLSGKLIRSLSDKDL 60 Query: 67 IDMYLLGGVVESDKLQGVARLLKEEGAIYTAAGDKDAGLFRAMRSLHLFLYADLHGADRT 126 + + GV+E+DK+Q +A LK+E ++ G++DA +++L LF+ L A+ T Sbjct: 61 MAVLTTNGVMETDKIQAIAVTLKQESDLHAELGNEDASFASGLKALQLFMRLSLVDAEPT 120 Query: 127 LLQMPADIDELLRETQAYSLPAKTERLLLSYMESLGRYAKAEDSLYRLWEQGEDVVQEGK 186 L+ + +LL + +AY LP T++L ++E G++A AED LY L E +E + Sbjct: 121 LVNPSKEAGQLLEQLKAYELPNHTKQLQAEWLEGEGQFAGAEDVLYELMEDEAVTGEEVE 180 Query: 187 ELYSR 191 Y R Sbjct: 181 AFYRR 185 >B9E5P0.1 B9E5P0_CLOK1 Putative uncharacterized protein Length = 231 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/174 (25%), Positives = 82/174 (47%), Gaps = 1/174 (0%) Query: 7 MFRRDYIVRMIEDMTAMVAKVMTLKQEKKTTEALWEVDELLIRHFXXXXXXXXXXXVEDI 66 M +R +I+ ++ +++ K+ K T+AL +D+ F E++ Sbjct: 9 MLKRSITDELIKKFEELLEQIIYNKKNKNYTKALDLIDDAFKYIFRLSIKFFNSFSTENL 68 Query: 67 IDMYLLGGVVESDKLQGVARLLKEEGAIYTAAGDKDAGLFRAMRSLHLFLYADLHGADRT 126 +++ G + +DK + +LLKEEG I + + +SL+LFL A L D Sbjct: 69 LEIIKSDGTINADKYIMMGKLLKEEGDILENQHKEQDAFYIYEKSLNLFLNAFLIKNDHC 128 Query: 127 LLQMP-ADIDELLRETQAYSLPAKTERLLLSYMESLGRYAKAEDSLYRLWEQGE 179 L+ +DID ++ + Y L E L+ Y +G + KAED+LY + + + Sbjct: 129 DLENHFSDIDPIIIKVSPYKLSRDIENRLIEYYLKVGSFDKAEDTLYEILKDSD 182 >A5N1Y6.1 A5N1Y6_CLOK5 Putative uncharacterized protein Length = 223 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/174 (25%), Positives = 82/174 (47%), Gaps = 1/174 (0%) Query: 7 MFRRDYIVRMIEDMTAMVAKVMTLKQEKKTTEALWEVDELLIRHFXXXXXXXXXXXVEDI 66 M +R +I+ ++ +++ K+ K T+AL +D+ F E++ Sbjct: 1 MLKRSITDELIKKFEELLEQIIYNKKNKNYTKALDLIDDAFKYIFRLSIKFFNSFSTENL 60 Query: 67 IDMYLLGGVVESDKLQGVARLLKEEGAIYTAAGDKDAGLFRAMRSLHLFLYADLHGADRT 126 +++ G + +DK + +LLKEEG I + + +SL+LFL A L D Sbjct: 61 LEIIKSDGTINADKYIMMGKLLKEEGDILENQHKEQDAFYIYEKSLNLFLNAFLIKNDHC 120 Query: 127 LLQMP-ADIDELLRETQAYSLPAKTERLLLSYMESLGRYAKAEDSLYRLWEQGE 179 L+ +DID ++ + Y L E L+ Y +G + KAED+LY + + + Sbjct: 121 DLENHFSDIDPIIIKVSPYKLSRDIENRLIEYYLKVGSFDKAEDTLYEILKDSD 174 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,078,179,963 Number of extensions: 38301307 Number of successful extensions: 92589 Number of sequences better than 1.0e-05: 7 Number of HSP's gapped: 92587 Number of HSP's successfully gapped: 7 Length of query: 226 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 95 Effective length of database: 1,826,543,238 Effective search space: 173521607610 Effective search space used: 173521607610 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)