BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0056.0003.p (167 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q9KG23.1 Q9KG23_BACHD BH0292 protein 129 8e-29 Q73AN3.1 Q73AN3_BACC1 Conserved domain protein 113 7e-24 Q63DC1.1 Q63DC1_BACCZ Possible transcriptional regulator 112 9e-24 C3FI69.1 C3FI69_BACTB Putative uncharacterized protein 112 1e-23 C3CZP1.1 C3CZP1_BACTU Putative uncharacterized protein 112 1e-23 >Q9KG23.1 Q9KG23_BACHD BH0292 protein Length = 177 Score = 129 bits (324), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 65/153 (42%), Positives = 96/153 (62%), Gaps = 6/153 (3%) Query: 16 LKVSPEQEKLLESALRIKIMHLLAAEPLTSKQVAEKLEKTPGNVHYHISKLFEGGLLELV 75 L +S EQ KLL SALR+KI+H L P T+KQVA++L +TPGN+HYHI +L+EG L++L+ Sbjct: 8 LSISIEQSKLLGSALRVKILHALEDVPKTAKQVADQLGQTPGNIHYHIQRLYEGQLIDLI 67 Query: 76 RTEAAGGIIQKFYRSKATWFRAENFSGFQFRAEDQVDHFTTRLTLSPEELESFRREMMDF 135 T+ GGI++K+YR+K+TWF ++ S + TTRL L+ E+LE F+ ++ D Sbjct: 68 ETKEIGGIVEKYYRAKSTWFNLKSDSK-SVSGDASATRITTRLLLTTEQLEQFQSDLRDV 126 Query: 136 ISSWESRVTLGT-----EYGVDIVIGHLRTPEP 163 + W + EY VDI + + EP Sbjct: 127 LDQWGRKSPQDDWEGLLEYAVDISLREVNHEEP 159 >Q73AN3.1 Q73AN3_BACC1 Conserved domain protein Length = 149 Score = 113 bits (282), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 59/128 (46%), Positives = 84/128 (65%), Gaps = 3/128 (2%) Query: 16 LKVSPEQEKLLESALRIKIMHLLAAEPLTSKQVAEKLEKTPGNVHYHISKLFEGGLLELV 75 L +S EQ+KL+ +A RI+I+HLL E LT+KQVA KL K+ G+VHYH+ L++GGLLELV Sbjct: 6 LTISAEQQKLISNATRIQILHLLKDEALTAKQVATKLNKSAGSVHYHVQILYDGGLLELV 65 Query: 76 RTEAAGGIIQKFYRSKATWFRAENFSGFQFRAEDQVDHFTTRLTLSPEELESFRREMMDF 135 T+ GII+K+Y++KA F E SG + D H + L L+PEEL+ E+ Sbjct: 66 DTKEKRGIIEKYYKAKAAHFYIEE-SGTEGTNTD--SHIVSHLFLTPEELQQLTWEVTQV 122 Query: 136 ISSWESRV 143 + WE++ Sbjct: 123 LLRWENKT 130 >Q63DC1.1 Q63DC1_BACCZ Possible transcriptional regulator Length = 149 Score = 112 bits (281), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 58/128 (45%), Positives = 84/128 (65%), Gaps = 3/128 (2%) Query: 16 LKVSPEQEKLLESALRIKIMHLLAAEPLTSKQVAEKLEKTPGNVHYHISKLFEGGLLELV 75 L +S EQ+KL+ +A RI+I+HLL E LT+KQ+A KL KT G+VHYH+ L++GGLLELV Sbjct: 6 LTISAEQQKLISNATRIQILHLLKDEALTAKQIATKLNKTAGSVHYHVQILYDGGLLELV 65 Query: 76 RTEAAGGIIQKFYRSKATWFRAENFSGFQFRAEDQVDHFTTRLTLSPEELESFRREMMDF 135 T+ GII+K+Y++KA F E SG + + H + L L+PEEL+ E+ Sbjct: 66 ETKEKRGIIEKYYKAKAAHFYIEE-SGTE--GTNTGSHIVSHLFLTPEELQQLTWEVTQV 122 Query: 136 ISSWESRV 143 + WE++ Sbjct: 123 LLRWENKT 130 >C3FI69.1 C3FI69_BACTB Putative uncharacterized protein Length = 149 Score = 112 bits (279), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 58/128 (45%), Positives = 84/128 (65%), Gaps = 3/128 (2%) Query: 16 LKVSPEQEKLLESALRIKIMHLLAAEPLTSKQVAEKLEKTPGNVHYHISKLFEGGLLELV 75 L +S EQ+KL+ +A RI+I+HLL E LT+KQVA KL K+ G+VHYH+ L++GGLLELV Sbjct: 6 LTISAEQQKLISNATRIQILHLLKDEALTAKQVATKLNKSAGSVHYHVQILYDGGLLELV 65 Query: 76 RTEAAGGIIQKFYRSKATWFRAENFSGFQFRAEDQVDHFTTRLTLSPEELESFRREMMDF 135 T+ GII+K+Y++KA F E SG + + H + L L+PEEL+ E+ Sbjct: 66 ETKEKRGIIEKYYKAKAAHFYIEE-SGTE--GTNTGSHIVSHLFLTPEELQQLTWEITQV 122 Query: 136 ISSWESRV 143 + WE++ Sbjct: 123 LLRWENKT 130 >C3CZP1.1 C3CZP1_BACTU Putative uncharacterized protein Length = 149 Score = 112 bits (279), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 58/128 (45%), Positives = 84/128 (65%), Gaps = 3/128 (2%) Query: 16 LKVSPEQEKLLESALRIKIMHLLAAEPLTSKQVAEKLEKTPGNVHYHISKLFEGGLLELV 75 L +S EQ+KL+ +A RI+I+HLL E LT+KQVA KL K+ G+VHYH+ L++GGLLELV Sbjct: 6 LTISAEQQKLISNATRIQILHLLKDEALTAKQVATKLNKSAGSVHYHVQILYDGGLLELV 65 Query: 76 RTEAAGGIIQKFYRSKATWFRAENFSGFQFRAEDQVDHFTTRLTLSPEELESFRREMMDF 135 T+ GII+K+Y++KA F E SG + + H + L L+PEEL+ E+ Sbjct: 66 ETKEKRGIIEKYYKAKAAHFYIEE-SGTE--GTNTGSHIVSHLFLTPEELQQLTWEITQV 122 Query: 136 ISSWESRV 143 + WE++ Sbjct: 123 LLRWENKT 130 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.133 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 975,045,915 Number of extensions: 35286657 Number of successful extensions: 102504 Number of sequences better than 1.0e-05: 135 Number of HSP's gapped: 102465 Number of HSP's successfully gapped: 135 Length of query: 167 Length of database: 3,060,696,203 Length adjustment: 125 Effective length of query: 42 Effective length of database: 1,883,069,328 Effective search space: 79088911776 Effective search space used: 79088911776 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 126 (53.1 bits)