BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0055.0007.p (159 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K8M7.1 B3K8M7_9BACI Putative uncharacterized protein 244 1e-63 B1DC57.1 B1DC57_9BACL Putative uncharacterized protein 240 2e-62 C1KZ18.1 C1KZ18_LISMC Putative uncharacterized protein 224 3e-57 Q4ER56.1 Q4ER56_LISMO Putative uncharacterized protein 224 3e-57 Q724B0.1 RLMH_LISMF Ribosomal RNA large subunit methyltransferas... 224 3e-57 >B3K8M7.1 B3K8M7_9BACI Putative uncharacterized protein Length = 159 Score = 244 bits (624), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 115/159 (72%), Positives = 138/159 (86%) Query: 1 MFIQIISVGKLKEKYLTLGIAEYAKRLTPYLKFQMIEVADEKAPDNLSEAEVVQVKVREG 60 M IQ++ VGKLKEKYL GIAEY+KRL PY++ + EV DEKAP+N+SEAE+ QV+ +EG Sbjct: 1 MNIQMVCVGKLKEKYLVQGIAEYSKRLAPYVRLTVHEVPDEKAPENMSEAEMRQVQEKEG 60 Query: 61 ERILAHIKSEAHVIALAIDGKLWSSEELAAELDRLGTYGTSHVVFVIGGSHGLSDDVMRR 120 IL HIK + HVIALAI G+LWSSE+LAA +D+LGTYGTS+V FVIGGS+GLS+DV++R Sbjct: 61 AGILGHIKPDTHVIALAIGGQLWSSEDLAAHMDKLGTYGTSNVAFVIGGSNGLSEDVLKR 120 Query: 121 AQQRMSFGRMTLPHQLMRLVLTEQIYRAVKINRGEPYHK 159 AQ ++SFGRMTLPHQLMRLVL EQIYRAVKINRGEPYHK Sbjct: 121 AQTKLSFGRMTLPHQLMRLVLVEQIYRAVKINRGEPYHK 159 >B1DC57.1 B1DC57_9BACL Putative uncharacterized protein Length = 159 Score = 240 bits (613), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 115/159 (72%), Positives = 134/159 (84%) Query: 1 MFIQIISVGKLKEKYLTLGIAEYAKRLTPYLKFQMIEVADEKAPDNLSEAEVVQVKVREG 60 M IQI SVGKLKEKYL GIAEYAKRL PY++ + EV DEKAP+ +S AE QV+ REG Sbjct: 1 MHIQIASVGKLKEKYLVQGIAEYAKRLGPYVRLTLTEVPDEKAPETMSPAEEAQVREREG 60 Query: 61 ERILAHIKSEAHVIALAIDGKLWSSEELAAELDRLGTYGTSHVVFVIGGSHGLSDDVMRR 120 ER+LA +K +AHV+ALAI G+LWSSE+LA +LD+L TYG SHV FVIGGS GL+ V++R Sbjct: 61 ERLLAQLKPDAHVVALAIGGELWSSEDLAEQLDKLATYGRSHVAFVIGGSTGLAPAVLQR 120 Query: 121 AQQRMSFGRMTLPHQLMRLVLTEQIYRAVKINRGEPYHK 159 AQQ++SFGRMTLPHQLMRLVL EQIYRAVKINRGEPYHK Sbjct: 121 AQQKLSFGRMTLPHQLMRLVLIEQIYRAVKINRGEPYHK 159 >C1KZ18.1 C1KZ18_LISMC Putative uncharacterized protein Length = 159 Score = 224 bits (570), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 109/159 (68%), Positives = 131/159 (82%) Query: 1 MFIQIISVGKLKEKYLTLGIAEYAKRLTPYLKFQMIEVADEKAPDNLSEAEVVQVKVREG 60 M IQI++VGKLKEKYL GIAEY KRL+ Y K ++EV DEKAP+ LS+AE+ QVK +EG Sbjct: 1 MNIQIVTVGKLKEKYLVQGIAEYLKRLSAYAKVTIVEVPDEKAPEVLSDAEMKQVKDKEG 60 Query: 61 ERILAHIKSEAHVIALAIDGKLWSSEELAAELDRLGTYGTSHVVFVIGGSHGLSDDVMRR 120 RILA I +AHVIALAIDGK+ SSEE AA+LD+L TYG S V FVIGGS GLS+ V++R Sbjct: 61 ARILAKIPDDAHVIALAIDGKMKSSEEFAADLDKLATYGKSKVTFVIGGSLGLSEAVLKR 120 Query: 121 AQQRMSFGRMTLPHQLMRLVLTEQIYRAVKINRGEPYHK 159 + +R+SFGR+TLPHQLMRLVL EQ+YRA +I RGEPYHK Sbjct: 121 SNERISFGRLTLPHQLMRLVLVEQVYRAFRIVRGEPYHK 159 >Q4ER56.1 Q4ER56_LISMO Putative uncharacterized protein Length = 159 Score = 224 bits (570), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 109/159 (68%), Positives = 131/159 (82%) Query: 1 MFIQIISVGKLKEKYLTLGIAEYAKRLTPYLKFQMIEVADEKAPDNLSEAEVVQVKVREG 60 M IQI++VGKLKEKYL GIAEY KRL+ Y K ++EV DEKAP+ LS+AE+ QVK +EG Sbjct: 1 MNIQIVTVGKLKEKYLVQGIAEYLKRLSAYAKVTIVEVPDEKAPEVLSDAEMKQVKDKEG 60 Query: 61 ERILAHIKSEAHVIALAIDGKLWSSEELAAELDRLGTYGTSHVVFVIGGSHGLSDDVMRR 120 RILA I +AHVIALAIDGK+ SSEE AA+LD+L TYG S V FVIGGS GLS+ V++R Sbjct: 61 ARILAKIPDDAHVIALAIDGKMKSSEEFAADLDKLATYGKSKVTFVIGGSLGLSEAVLKR 120 Query: 121 AQQRMSFGRMTLPHQLMRLVLTEQIYRAVKINRGEPYHK 159 + +R+SFGR+TLPHQLMRLVL EQ+YRA +I RGEPYHK Sbjct: 121 SNERISFGRLTLPHQLMRLVLVEQVYRAFRIVRGEPYHK 159 >Q724B0.1 RLMH_LISMF Ribosomal RNA large subunit methyltransferase H EC=2.1.1.- Length = 159 Score = 224 bits (570), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 109/159 (68%), Positives = 131/159 (82%) Query: 1 MFIQIISVGKLKEKYLTLGIAEYAKRLTPYLKFQMIEVADEKAPDNLSEAEVVQVKVREG 60 M IQI++VGKLKEKYL GIAEY KRL+ Y K ++EV DEKAP+ LS+AE+ QVK +EG Sbjct: 1 MNIQIVTVGKLKEKYLVQGIAEYLKRLSAYAKVTIVEVPDEKAPEVLSDAEMKQVKDKEG 60 Query: 61 ERILAHIKSEAHVIALAIDGKLWSSEELAAELDRLGTYGTSHVVFVIGGSHGLSDDVMRR 120 RILA I +AHVIALAIDGK+ SSEE AA+LD+L TYG S V FVIGGS GLS+ V++R Sbjct: 61 ARILAKIPDDAHVIALAIDGKMKSSEEFAADLDKLATYGKSKVTFVIGGSLGLSEAVLKR 120 Query: 121 AQQRMSFGRMTLPHQLMRLVLTEQIYRAVKINRGEPYHK 159 + +R+SFGR+TLPHQLMRLVL EQ+YRA +I RGEPYHK Sbjct: 121 SNERISFGRLTLPHQLMRLVLVEQVYRAFRIVRGEPYHK 159 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 861,974,460 Number of extensions: 30596135 Number of successful extensions: 89125 Number of sequences better than 1.0e-05: 1243 Number of HSP's gapped: 88111 Number of HSP's successfully gapped: 1243 Length of query: 159 Length of database: 3,060,696,203 Length adjustment: 120 Effective length of query: 39 Effective length of database: 1,930,174,403 Effective search space: 75276801717 Effective search space used: 75276801717 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 125 (52.8 bits)