BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0054.0015.p (329 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D7P3.1 B1D7P3_9BACL Putative uncharacterized protein 367 1e-99 B3K9K4.1 B3K9K4_9BACI Putative uncharacterized protein 344 5e-93 Q5WDG6.1 Q5WDG6_BACSK Drug/metabolite transporter (DMT) superfam... 240 2e-61 B8FPP2.1 B8FPP2_DESHD Putative uncharacterized protein 214 1e-53 Q24R58.1 Q24R58_DESHY Putative uncharacterized protein 212 5e-53 >B1D7P3.1 B1D7P3_9BACL Putative uncharacterized protein Length = 310 Score = 367 bits (941), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 191/311 (61%), Positives = 229/311 (73%), Gaps = 1/311 (0%) Query: 1 MSQATASSSGVRTAPLRSGFWLVVLGAALWGVDPLFRIILLKSLTSSQIVLLEHVVLFLA 60 MS TAS +P+R FWLVVLGAALWGVDP+FRIILLK+LTS+QIVLLEH++LF+A Sbjct: 1 MSNITASPLLRTKSPVRPEFWLVVLGAALWGVDPVFRIILLKTLTSTQIVLLEHIILFIA 60 Query: 61 AAPVLWRHRAELKGVRLRQAAALLIVSWGGSAVATILFTKALASGDFNAVLLLQKLQPLF 120 AAPVLW+ RA+L+ VRLRQ ALL VSWGGSA+ATILFT+ L G+ NAVLLLQKLQPLF Sbjct: 61 AAPVLWKFRADLRDVRLRQLGALLFVSWGGSALATILFTQGLVHGNPNAVLLLQKLQPLF 120 Query: 121 AIGLAAVILKERLPKNFGPLIIVALAGTYLLTFGWTIPFGHVNSFISIXXXXXXXXXXXX 180 AI +A ++LKE LPK GPL+++A+ GTYLLTFG+T+PFGHVN F+ + Sbjct: 121 AIVMARMLLKELLPKKIGPLLVLAIVGTYLLTFGFTLPFGHVNEFVQVGSLLSLGAAALW 180 Query: 181 XXXTVMGRYLLGSMKYETVTSLRFILALPLLFVITSMEGAPWQIHGGLGTSAAIGINXXX 240 TVMGRYLLGSMKYETVTSLRF++ALPLL VIT EGA W++ G A I +N Sbjct: 181 GGSTVMGRYLLGSMKYETVTSLRFMMALPLLLVITWSEGAAWKLAEGTDPVAVI-VNLLL 239 Query: 241 XXXXXXXXXXXXYYKGLNTTKASYATLAELSFPMTGILINWVVYHQLVTLPQIIGFALIW 300 YYKGL+ KASYAT+AELSFPM G+L+NW V+ Q++T QI GF IW Sbjct: 240 QALLPGLVSLLVYYKGLSKIKASYATIAELSFPMVGVLLNWTVFGQVITSAQIAGFVFIW 299 Query: 301 TALFFISSQQS 311 LFFIS QQ+ Sbjct: 300 FTLFFISRQQN 310 >B3K9K4.1 B3K9K4_9BACI Putative uncharacterized protein Length = 326 Score = 344 bits (883), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 180/316 (56%), Positives = 224/316 (70%), Gaps = 11/316 (3%) Query: 8 SSGVRTAP----------LRSGFWLVVLGAALWGVDPLFRIILLKSLTSSQIVLLEHVVL 57 ++G++ P + GFWLVVLGAALWGVDPLFR+ILLK+LTS+QIVLLEH+++ Sbjct: 5 NTGIKVKPYGSDTQANRRFKGGFWLVVLGAALWGVDPLFRVILLKNLTSAQIVLLEHIII 64 Query: 58 FLAAAPVLWRHRAELKGVRLRQAAALLIVSWGGSAVATILFTKALASGDFNAVLLLQKLQ 117 L A PVLW++R ELKG+ ALL +SWGGSA+AT+LFT L+SG+ NAVLLLQKLQ Sbjct: 65 SLIAIPVLWKNREELKGLGWNHVGALLFISWGGSALATVLFTMGLSSGNLNAVLLLQKLQ 124 Query: 118 PLFAIGLAAVILKERLPKNFGPLIIVALAGTYLLTFGWTIPFGHVNSFISIXXXXXXXXX 177 PLFAI LA+++LKE+LP++FG L+I+ALAGTYLLTFG T+P GH N F+ + Sbjct: 125 PLFAIILASLLLKEKLPRHFGLLLIIALAGTYLLTFGLTLPIGHWNEFVQVGSLLSLGAA 184 Query: 178 XXXXXXTVMGRYLLGSMKYETVTSLRFILALPLLFVITSMEGAPWQIHG-GLGTSAAIGI 236 TVMGR ++G +KYETVTSLRF+LALPLL V+T EGA W + G A + + Sbjct: 185 ALWGGSTVMGRLMVGKLKYETVTSLRFVLALPLLTVLTWSEGAAWNMPAWNTGAFALVSL 244 Query: 237 NXXXXXXXXXXXXXXXYYKGLNTTKASYATLAELSFPMTGILINWVVYHQLVTLPQIIGF 296 N YYKGL TTKAS ATLAELSFPM G+LINW+V+ Q+VT PQ++GF Sbjct: 245 NLIGQALLPGLLSLLVYYKGLTTTKASVATLAELSFPMVGVLINWIVFQQIVTGPQLLGF 304 Query: 297 ALIWTALFFISSQQSR 312 LIW LF IS QQS Sbjct: 305 LLIWIVLFIISRQQSE 320 >Q5WDG6.1 Q5WDG6_BACSK Drug/metabolite transporter (DMT) superfamily protein Length = 322 Score = 240 bits (612), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 143/310 (46%), Positives = 188/310 (60%), Gaps = 6/310 (1%) Query: 17 RSGFWLVVLGAALWGVDPLFRIILLKSLTSSQIVLLEHVVLFLAAAPVLWRHRAELKGVR 76 + FW +V+GAA WG++PLFR++LL+++TS QIV +EH++L A P++W +R++L + Sbjct: 7 QKTFWFIVIGAAFWGINPLFRLLLLETMTSLQIVFIEHIILAFIAVPLIWTYRSDLAHLS 66 Query: 77 LRQAAALLIVSWGGSAVATILFTKAL------ASGDFNAVLLLQKLQPLFAIGLAAVILK 130 L ALL +SWGGSA+AT+LFT+ L G N+VLLLQKLQP+FAI LA +LK Sbjct: 67 LVDIGALLFISWGGSAIATLLFTQGLTYAATHGMGQINSVLLLQKLQPIFAIVLARFVLK 126 Query: 131 ERLPKNFGPLIIVALAGTYLLTFGWTIPFGHVNSFISIXXXXXXXXXXXXXXXTVMGRYL 190 E PK+FG L+ VAL GTYLLTFG+++P + TVMGR L Sbjct: 127 ESWPKHFGYLVPVALVGTYLLTFGFSLPISGFGDVFQLGSLFAIGAAALWGGSTVMGRLL 186 Query: 191 LGSMKYETVTSLRFILALPLLFVITSMEGAPWQIHGGLGTSAAIGINXXXXXXXXXXXXX 250 L +YETVT+LRF+LALPLL V+ W I IN Sbjct: 187 LRKCRYETVTALRFLLALPLLSVLVLTSPDAWNEPASATALFFISINLLASALLPGLVSM 246 Query: 251 XXYYKGLNTTKASYATLAELSFPMTGILINWVVYHQLVTLPQIIGFALIWTALFFISSQQ 310 YY+GL KAS AT+AELSFPM G+L++WV + VT PQ +GFALIW L+ IS QQ Sbjct: 247 LLYYRGLQAIKASVATIAELSFPMAGLLVSWVTMQETVTFPQALGFALIWIVLYQISKQQ 306 Query: 311 SRQAVPASLE 320 + V LE Sbjct: 307 DAKEVLPPLE 316 >B8FPP2.1 B8FPP2_DESHD Putative uncharacterized protein Length = 320 Score = 214 bits (544), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 132/309 (42%), Positives = 186/309 (60%), Gaps = 3/309 (0%) Query: 12 RTAPLRSGFWLVVLGAALWGVDPLFRIILLKSLTSSQIVLLEHVVLFLAAAPVLWRHRAE 71 + A RS WL+ LGAA+WG+D +F + LL+ ++SSQIV LEH++LFL AAPVL R E Sbjct: 5 KQASNRS-IWLIALGAAMWGLDGVFIVSLLQHVSSSQIVWLEHLLLFLFAAPVLIWKRQE 63 Query: 72 LKGVRLRQAAALLIVSWGGSAVATILFTKALASGDFNAVLLLQKLQPLFAIGLAAVILKE 131 LK + A+L + WGGSA+A+ILFT G+ N VLLLQK+QP+F I LA+ +LKE Sbjct: 64 LKQLNGGDWLAVLFIGWGGSALASILFTAGFTYGNPNVVLLLQKVQPIFVILLASWMLKE 123 Query: 132 RLPKNFGPLIIVALAGTYLLTFGWTIPFGHVNSFISIXXXXXXXXXXXXXXXTVMGRYLL 191 R+ K+F L +VAL G YLLTFG +P V+ + TVMG+ L+ Sbjct: 124 RMRKDFYALFVVALIGAYLLTFGLHLPTSGVSLAQLLGSLCAIGAAALWGGSTVMGKRLI 183 Query: 192 GSMKYETVTSLRFILALPLLFVITSMEGAPWQIHGGLGTSAAIGINXXXXXXXXXXXXXX 251 G + + T+T+LRF +ALPLL +I ++ W G A + N Sbjct: 184 GKLSFTTLTALRFAVALPLLTIIVLVQQPNWADLGQSLHLAPVWANLLYQTLVPSLLSLL 243 Query: 252 XYYKGLNTTKASYATLAELSFPMTGILINWVVYHQLVTLPQIIGFALIWTALFFISS--Q 309 YY+GLN +AS+AT+AEL+FP TG+L+NW++ HQ + L Q +GFA++W + +S Sbjct: 244 LYYRGLNGVRASHATIAELAFPATGLLVNWLILHQTIDLGQWLGFAIVWLVVLQLSRMPN 303 Query: 310 QSRQAVPAS 318 + AV S Sbjct: 304 DPKSAVKTS 312 >Q24R58.1 Q24R58_DESHY Putative uncharacterized protein Length = 353 Score = 212 bits (539), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 126/287 (43%), Positives = 177/287 (61%) Query: 21 WLVVLGAALWGVDPLFRIILLKSLTSSQIVLLEHVVLFLAAAPVLWRHRAELKGVRLRQA 80 WL+ LGAA+WG+D +F + LL+ ++SSQIV LEH++LFL AAPVL R ELK + Sbjct: 46 WLIALGAAMWGLDGVFIVSLLQHVSSSQIVWLEHLLLFLFAAPVLIWKRQELKQLNGGDW 105 Query: 81 AALLIVSWGGSAVATILFTKALASGDFNAVLLLQKLQPLFAIGLAAVILKERLPKNFGPL 140 A+L + WGGSA+A+ILFT G+ N VLLLQK+QP+F I LA+ +LKER+ K+F L Sbjct: 106 LAVLFIGWGGSALASILFTAGFTYGNPNVVLLLQKVQPIFVILLASWMLKERMRKDFYAL 165 Query: 141 IIVALAGTYLLTFGWTIPFGHVNSFISIXXXXXXXXXXXXXXXTVMGRYLLGSMKYETVT 200 +VAL G YLLT G +P V+ + TVMG+ L+G + + T+T Sbjct: 166 FVVALIGAYLLTIGLHLPTSEVSLAQLLGSLCAIGAAALWGGSTVMGKRLIGKLSFTTLT 225 Query: 201 SLRFILALPLLFVITSMEGAPWQIHGGLGTSAAIGINXXXXXXXXXXXXXXXYYKGLNTT 260 +LRF +ALPLL VI ++ W G A + N YY+GLN Sbjct: 226 ALRFAVALPLLTVIVLVQQPNWADLGQSLHLAPVWANLLYQTLVPSLLSLLLYYRGLNGV 285 Query: 261 KASYATLAELSFPMTGILINWVVYHQLVTLPQIIGFALIWTALFFIS 307 +AS+AT+AEL+FP TG+L+NW++ HQ + L Q +GFA++W + +S Sbjct: 286 RASHATIAELAFPATGLLVNWLILHQTIDLGQWLGFAIVWLVVLQLS 332 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.326 0.138 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,605,838,284 Number of extensions: 57294926 Number of successful extensions: 208777 Number of sequences better than 1.0e-05: 21 Number of HSP's gapped: 208768 Number of HSP's successfully gapped: 21 Length of query: 329 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 193 Effective length of database: 1,779,438,163 Effective search space: 343431565459 Effective search space used: 343431565459 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 131 (55.1 bits)