BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0054.0014.p (399 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0Z8X6.1 C0Z8X6_BREBN Hypothetical membrane protein 377 e-102 C4L371.1 C4L371_EXISA ABC-type phosphate transport system peripl... 336 3e-90 A3I5J7.1 A3I5J7_9BACI Hypothetical membrane protein 327 2e-87 A6CHZ9.1 A6CHZ9_9BACI Hypothetical membrane protein 325 4e-87 A6EI50.1 A6EI50_9SPHI Hypothetical membrane protein 298 9e-79 >C0Z8X6.1 C0Z8X6_BREBN Hypothetical membrane protein Length = 387 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 189/374 (50%), Positives = 252/374 (67%), Gaps = 4/374 (1%) Query: 26 VLAVAGFIGYFITALTLGLAFYAPLIVVVACGLAAYFVMTVFQLLSPRTRNLGIAVFAGL 85 ++ V G + +TAL Y+ L+ V Y + +F R N + V+ Sbjct: 18 IITVIGVVAMVMTALNAQGRVYSLLVAVTTVVFILYIIGQMFAPQKSRLWNRALFVYFLF 77 Query: 86 CLLATAGYELNKAYVNSFAVVDDREVDLTQYKPFDALSKAAVLEHPASYHIHDQLPRLDG 145 C L AGYE++ Y NS +V + EVD QYKPF SK L+ PA+ + LP++DG Sbjct: 78 CTLPVAGYEISSYYHNSIPMVSEAEVDQEQYKPFRTGSKIQKLDQPATLSLQSDLPKIDG 137 Query: 146 ATALYPLYSAFVQAVYPEDNYDPYEINDQNIVICSSTAFAYKRLIAGDSDIIFAAAPSSA 205 ATALYPLY++FVQAVYP+ +YD + + V+ S T AY+ L+ G D+IFAAAPS Sbjct: 138 ATALYPLYASFVQAVYPKKDYDL----ENSEVMVSKTPKAYENLLDGKVDVIFAAAPSEE 193 Query: 206 QQKEAKQAGKELKLTPIGREAFVFFVNKRNPVSSLSTDQVKDIYSGKVRNWKEVGGKHQR 265 Q AK+ G ELKLTPIGREAFVFFV+ + V L+T Q++ IY+G + +W+EVGG ++ Sbjct: 194 QLLAAKEKGVELKLTPIGREAFVFFVHAESLVQGLTTQQIRGIYAGDIISWEEVGGGYEF 253 Query: 266 IRAFQREEGSGSQTMLEKIMAGRTLMTPPQEDVMDLMSGIISQTSDYRNFNNALGFSFLF 325 IRAFQR E SGSQTML+KIM G+ LM PQEDV+ M GII QT++YRN++NA+G+SFLF Sbjct: 254 IRAFQRPENSGSQTMLKKIMGGKELMKAPQEDVVTGMGGIIEQTANYRNYSNAIGYSFLF 313 Query: 326 YASEMNANHHIKLLAIDGVQPDKEGIRSGKYPMTTEFYAVTAGSVNPNVQPFLDWIQSAE 385 YA+EM N +I+LLAIDGV+P+KE I++ YP EFYAVTAG+ NPN + ++WI S + Sbjct: 314 YATEMVRNGNIRLLAIDGVKPNKETIKNRAYPFAAEFYAVTAGTDNPNAEKLIEWILSPQ 373 Query: 386 GQELVEKTGYTSLK 399 GQELVEKTGY +K Sbjct: 374 GQELVEKTGYIPVK 387 >C4L371.1 C4L371_EXISA ABC-type phosphate transport system periplasmic component-like protein Length = 390 Score = 336 bits (861), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 184/396 (46%), Positives = 254/396 (64%), Gaps = 22/396 (5%) Query: 13 FGLNLLYTVLILIVLAVAGFIGYFITA--LTLG-----LAFYAPLIVVVACGLAAYFVMT 65 F + ++ + + IV++V F+ F +TLG +Y ++++V GL + + Sbjct: 6 FSVGTVFILFVTIVISV--FVALFTMGDPITLGRPILWTIWYMAVLLIVCMGL---YDFS 60 Query: 66 VFQLLSPRTRNLGIAVFAGLCLLATA-GYELNKAYVNSFAVVDDREVDLTQYKPFDALSK 124 F R + LG G+ L A+ GY + Y +S + ++R V+LT Y+PF + Sbjct: 61 SFSKQKIR-KVLGWGTLVGVLLFASVKGYYM---YQDSLKI-EERGVELTDYQPFTDSGQ 115 Query: 125 AAVLEHPASYHIHDQLPRLDGATALYPLYSAFVQAVYPE-DNYDPYEINDQ-NIVICSST 182 A L+H AS + LPRLDGATALYP+Y++FV+AVYP+ + YDPY NDQ + V+ ++T Sbjct: 116 LARLDHEASVKFGEGLPRLDGATALYPMYASFVEAVYPDSETYDPY--NDQTSKVVSTTT 173 Query: 183 AFAYKRLIAGDSDIIFAAAPSSAQQKEAKQAGKELKLTPIGREAFVFFVNKRNPVSSLST 242 AY RL+ +D+IF A PS Q K AKQ L +TPIGREAFVFFV++ NPV SL+ Sbjct: 174 PEAYSRLMNDQTDVIFVAGPSDRQLKVAKQKNVSLHMTPIGREAFVFFVHEDNPVDSLTM 233 Query: 243 DQVKDIYSGKVRNWKEVGGKHQRIRAFQREEGSGSQTMLEKIMAGRTLMTPPQEDVMDLM 302 +QV+ IYSG +RNW+EVGG + +RAFQR E SGSQT L+K+M + LM P EDV + M Sbjct: 234 EQVRGIYSGDIRNWEEVGGNSEAVRAFQRPEDSGSQTALQKMMGEQKLMEAPVEDVPEGM 293 Query: 303 SGIISQTSDYRNFNNALGFSFLFYASEMNANHHIKLLAIDGVQPDKEGIRSGKYPMTTEF 362 GII QTS YRN NA+GFSF +YA+EM +H IKLL I+G++P E I+ G YP+T+EF Sbjct: 294 GGIIQQTSSYRNHKNAIGFSFRYYATEMVKDHKIKLLRIEGIEPTVETIQDGSYPLTSEF 353 Query: 363 YAVTAGSVNPNVQPFLDWIQSAEGQELVEKTGYTSL 398 YAVT + FL W++S +GQ LVEKTGY L Sbjct: 354 YAVTTDEKAKQYEDFLQWLESEDGQTLVEKTGYVRL 389 >A3I5J7.1 A3I5J7_9BACI Hypothetical membrane protein Length = 382 Score = 327 bits (837), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 168/385 (43%), Positives = 239/385 (62%), Gaps = 6/385 (1%) Query: 15 LNLLYTVLILIVLAVAGFIGYFITALTLGLAFYAPLIVVVACGLAAYFVMTVFQLLSPRT 74 + L V ++I L+V + I L G + PL+ V L FV +F + + Sbjct: 2 IKFLQIVSVMIGLSVVTVMVALIVILN-GHMHFLPLVYTVPVCLFVLFVGGIFNWIHTKK 60 Query: 75 RNLGIAVFAGLCLLATAGYELNKAYVNSFAVVDDREVDLTQYKPFDALSKAAVLEHPASY 134 + + G+ ++ + Y S VD E+D++ Y+PF + + AS Sbjct: 61 KRRWLMSVLGVAIVIALITPIQHYYKLSIPTVD-AEIDISAYQPFTRGNLVVKPDEVASL 119 Query: 135 HIHDQLPRLDGATALYPLYSAFVQAVYPEDNYDPYEINDQNIVICSSTAFAYKRLIAGDS 194 + + LPRLDGATA+YPLY+AFV+A YP+ +Y PY Q S T AY+ LIAGD Sbjct: 120 QLTESLPRLDGATAMYPLYAAFVEATYPKGDYQPYNSRVQ----VSRTPEAYQSLIAGDV 175 Query: 195 DIIFAAAPSSAQQKEAKQAGKELKLTPIGREAFVFFVNKRNPVSSLSTDQVKDIYSGKVR 254 D+IF AAPS +Q+ +A++ G +TPIGREAFVFFV+ +N V +++ +QVK IY+G + Sbjct: 176 DLIFVAAPSVSQEWQAEKEGLTFDMTPIGREAFVFFVHHKNNVDNVTLEQVKKIYAGDIT 235 Query: 255 NWKEVGGKHQRIRAFQREEGSGSQTMLEKIMAGRTLMTPPQEDVMDLMSGIISQTSDYRN 314 NW++VGG+ + IRAFQR SGSQT LEK+M +M P E++ M GII + S YRN Sbjct: 236 NWRDVGGEDEAIRAFQRLADSGSQTALEKLMGNMPIMKAPSENIASGMGGIIHEVSQYRN 295 Query: 315 FNNALGFSFLFYASEMNANHHIKLLAIDGVQPDKEGIRSGKYPMTTEFYAVTAGSVNPNV 374 + NA+G++F +Y++EM N IKLL+IDGV P KE IR+G YP+ +EFYAVTAG+ N NV Sbjct: 296 YKNAMGYTFRYYSTEMVQNKKIKLLSIDGVAPTKENIRNGTYPLVSEFYAVTAGTENENV 355 Query: 375 QPFLDWIQSAEGQELVEKTGYTSLK 399 Q +DWI++ EGQ LVEK GY ++ Sbjct: 356 QKLIDWIRTDEGQALVEKVGYVPVE 380 >A6CHZ9.1 A6CHZ9_9BACI Hypothetical membrane protein Length = 380 Score = 325 bits (833), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 168/366 (45%), Positives = 234/366 (63%), Gaps = 9/366 (2%) Query: 33 IGYFITALTLGLAFYAPLIVVVACGLAAYFVMTVFQLLSPRTRNLGIAVFAGLCLLATAG 92 +GY I + Y ++ + + + + L + R L V + LL AG Sbjct: 23 VGYSILTSSQNGYIYTGIVTAAILVIGNLYFLGLLARLPKKARML---VPGLIILLPLAG 79 Query: 93 YELNKAYVNSFAVVDDREVDLTQYKPFDALSKAAVLEHPASYHIHDQLPRLDGATALYPL 152 Y +AY+N + ++ EVDL+ Y+PF + A L+ ASY I QLP LDGATALYP+ Sbjct: 80 YGGYEAYINHIEI-ENAEVDLSDYEPFKKDTDAVSLDGGASYSIDGQLPTLDGATALYPV 138 Query: 153 YSAFVQAVYPEDNYDPYEINDQNIVICSSTAFAYKRLIAGDSDIIFAAAPSSAQQKEAKQ 212 ++FVQAVYPE Y P++ ++ + S T AY RL D DIIF A PS Q+ + Sbjct: 139 IASFVQAVYPEGEY-PHDNPSESEAVASKTGNAYDRLAKNDVDIIFTAGPSELQESRLQN 197 Query: 213 AGKELKLTPIGREAFVFFVNKRNPVSSLSTDQVKDIYSGKVRNWKEVGGKHQRIRAFQRE 272 + +TPIG+EAFVFFV+K NPV SLS +Q++ IYSGK+ NWKEVGGK + I AFQR Sbjct: 198 ----MNMTPIGKEAFVFFVHKSNPVESLSIEQLQQIYSGKITNWKEVGGKDKEIIAFQRP 253 Query: 273 EGSGSQTMLEKIMAGRTLMTPPQEDVMDLMSGIISQTSDYRNFNNALGFSFLFYASEMNA 332 EGSGSQT L+K+M +M PP + + M G+I + S+YRN+ NA+GFS+ F+A+ M Sbjct: 254 EGSGSQTGLQKMMGDVPIMKPPTDQKVSGMGGVIEKASNYRNYRNAIGFSYRFFATGMIE 313 Query: 333 NHHIKLLAIDGVQPDKEGIRSGKYPMTTEFYAVTAGSVNPNVQPFLDWIQSAEGQELVEK 392 N IKLL ++GV PD EGI+S +Y +T EFYA+T G+ NP+V+PF++WI S +GQEL++K Sbjct: 314 NKGIKLLKVEGVDPDIEGIQSEEYLLTGEFYAITNGTDNPHVEPFIEWITSQQGQELIQK 373 Query: 393 TGYTSL 398 TGY + Sbjct: 374 TGYVPI 379 >A6EI50.1 A6EI50_9SPHI Hypothetical membrane protein Length = 340 Score = 298 bits (762), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 157/324 (48%), Positives = 207/324 (63%), Gaps = 10/324 (3%) Query: 80 AVFAGLCLLATAGYELNKAYVNSFAVVDDREVDLTQYKPFDALSKAAVLEHPASYHIHDQ 139 AV G+C G N + AVV D ++L QY PF +KA L + I Sbjct: 20 AVIYGICASIYLGQWANDYLESKIAVVKD-TINLEQYGPFARPTKAVSLNKASEVKIAGD 78 Query: 140 LPRLDGATALYPLYSAFVQAVYPEDNYDPYEINDQNIVICSSTAFAYKRLIAGDSDIIFA 199 LP LDGATALYPLYSAF +A YP+ +YD D++ V+C++T AY+ L+ G D+IF Sbjct: 79 LPVLDGATALYPLYSAFAKATYPQKHYDV----DKSEVMCTNTISAYQSLVDGTVDVIFV 134 Query: 200 AAPSSAQQKEAKQAGKELKLTPIGREAFVFFVNKRNPVSSLSTDQVKDIYSGKVRNWKEV 259 A PS Q AK+ G EL LT IGREAFVFFVN +N VSSLS Q++ IY+G++ NWK V Sbjct: 135 ARPSQEQLDYAKERGVELFLTAIGREAFVFFVNSKNEVSSLSIAQIRRIYAGEITNWKTV 194 Query: 260 GGKHQRIRAFQREEGSGSQTMLEKIMAGRTLMTPPQEDVMDLMSGIISQTSDYRNFNNAL 319 GG I+AFQR EGSGSQTMLE M G LM PP + +M GII +T++Y+NF +AL Sbjct: 195 GGSSSDIKAFQRPEGSGSQTMLEHNMGGYRLMNPPGNQRVQMMGGIIRETAEYKNFKSAL 254 Query: 320 GFSFLFYASEMNANHHIKLLAIDGVQPDKEGIRSGKYPMTTEFYAVT-----AGSVNPNV 374 G+SFL++A+EM N IK+L IDGV + I + YP++T+FYAVT + ++ Sbjct: 255 GYSFLYFATEMVKNKEIKILGIDGVAATRANIANRSYPLSTDFYAVTRNDSSSSEKKTSI 314 Query: 375 QPFLDWIQSAEGQELVEKTGYTSL 398 + L +I S EG+E++EKTGYT L Sbjct: 315 KKLLAFILSDEGKEIIEKTGYTPL 338 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,276,472,950 Number of extensions: 93791020 Number of successful extensions: 257086 Number of sequences better than 1.0e-05: 988 Number of HSP's gapped: 256398 Number of HSP's successfully gapped: 991 Length of query: 399 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 261 Effective length of database: 1,760,596,133 Effective search space: 459515590713 Effective search space used: 459515590713 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)