BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0054.0012.p (384 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K756.1 B3K756_9BACI Putative uncharacterized protein 384 e-105 Q65FN9.1 Q65FN9_BACLD YubA 358 6e-97 A7Z831.1 A7Z831_BACA2 YubA 347 8e-94 A0AG37.1 A0AG37_LISW6 Complete genome 347 9e-94 Q722W6.1 Q722W6_LISMF Putative membrane protein 346 2e-93 >B3K756.1 B3K756_9BACI Putative uncharacterized protein Length = 379 Score = 384 bits (987), Expect = e-105, Method: Compositional matrix adjust. Identities = 191/377 (50%), Positives = 256/377 (67%), Gaps = 1/377 (0%) Query: 1 MERLQVWPEKFKKFFLNNRFXXXXXXXXXXXXXXXXFAKIPFIFKPISVLLHTVAAPLLL 60 ME+ ++WP++FK+FFLNN+F +KI F+ PI+VL+ T+ P++L Sbjct: 1 MEQPRIWPDRFKRFFLNNKFVLLLLVLLLVGLNIMVLSKISFVLHPIAVLIKTIVLPIIL 60 Query: 61 SGIAYYLLNPLVDRMEKRSKIRRPYGIVXXXXXXXXXXXXXXXXXXPMIRTQLVGLIDNF 120 SGI YYLLNPLVD +E+R KI+R + I+ P++RTQ++ LIDNF Sbjct: 61 SGILYYLLNPLVDMLERR-KIKRGWSILILYLLIAGILTVVVLAVIPVLRTQIMSLIDNF 119 Query: 121 PKYSDQIQQEFIDLTGSKLFEQIQENVGTDFTDITSKVTTWGTSFLNNAVSGVGNFVGAL 180 P YS++++Q+F +LTGS+L+ Q+QE V + + +T T LN+ S VG F+GA Sbjct: 120 PTYSEKVRQQFEELTGSQLYSQLQEAVNINSQEWWGTITQKATEILNSTWSKVGGFLGAF 179 Query: 181 TEIVLALVTTPFILFYLLRDGKRLPDYLMRFIPTALRPQTRMVMSEMNSQVASYIRGQII 240 TEIVL+++T PF+LFY+L+DGK+LP ++ ++PT R V+ ++N Q++S+IRGQII Sbjct: 180 TEIVLSIITVPFVLFYMLKDGKKLPRKILSYLPTQSRSGILHVLQDINHQISSFIRGQII 239 Query: 241 VSCCXXXXXXXXXXXXXXXXSLVLAIVAACTAVVPYLGPAIAITPALIVALVTSPFMLLK 300 VS C +L+LAI+A+ T+VVPYLGPAIAITPALIVALVTSP MLLK Sbjct: 240 VSVCIGILLYIGYMIIGLDYALILAIIASFTSVVPYLGPAIAITPALIVALVTSPVMLLK 299 Query: 301 MVCVWTAVQLIEGKFISPQIMGKTLKXXXXXXXXXXXFAGKMFGVLGIILAVPGYAVLKV 360 MV VWT VQLIEGKFISPQIMGKTLK AG +FGV+GI+LAVPGYAVLKV Sbjct: 300 MVAVWTIVQLIEGKFISPQIMGKTLKIHPITIIFVILTAGNLFGVVGILLAVPGYAVLKV 359 Query: 361 VVTHVFQWFRFRSGLYK 377 VTH+F+WF+ SGLY Sbjct: 360 CVTHIFEWFKNTSGLYD 376 >Q65FN9.1 Q65FN9_BACLD YubA Length = 381 Score = 358 bits (918), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 182/381 (47%), Positives = 256/381 (67%), Gaps = 1/381 (0%) Query: 1 MERLQVWPEKFKKFFLNNRFXXXXXXXXXXXXXXXXFAKIPFIFKPISVLLHTVAAPLLL 60 M+ L +W +FKKFFL+N+F F K FIF P VL+ T+A P++L Sbjct: 1 MDSLHMWGGRFKKFFLDNKFVLFLLILLLIGLNILVFTKASFIFTPFIVLVETIALPVVL 60 Query: 61 SGIAYYLLNPLVDRMEKRSKIRRPYGIVXXXXXXXXXXXXXXXXXXPMIRTQLVGLIDNF 120 +G+ YYLLNP+VD +E ++ ++R Y I+ P++R Q+ L+DNF Sbjct: 61 TGVVYYLLNPIVDFLEWKN-VKRIYSILLLYIVIIGLITISIVSVIPLLREQITSLVDNF 119 Query: 121 PKYSDQIQQEFIDLTGSKLFEQIQENVGTDFTDITSKVTTWGTSFLNNAVSGVGNFVGAL 180 P+Y ++ + L GS+ F Q+Q+ + + TD+ SK++ T+ LN+ +GVG F+GA+ Sbjct: 120 PRYVHIVEDQIKQLIGSQFFNQVQQTMNINLTDLASKLSDQATTILNSTFTGVGTFIGAV 179 Query: 181 TEIVLALVTTPFILFYLLRDGKRLPDYLMRFIPTALRPQTRMVMSEMNSQVASYIRGQII 240 TE+V+++VT PFILFYLL+DGK+LP ++++ IP LR QT ++MSEMN +++SYIRGQII Sbjct: 180 TEVVISIVTVPFILFYLLKDGKKLPLFILKLIPVRLREQTYVMMSEMNHRLSSYIRGQII 239 Query: 241 VSCCXXXXXXXXXXXXXXXXSLVLAIVAACTAVVPYLGPAIAITPALIVALVTSPFMLLK 300 VS C + +LA+VAACT++VPYLGP IAITPA+I+ALVTSPFML+K Sbjct: 240 VSFCIGCLLFIGYMIIGLDYASLLALVAACTSIVPYLGPTIAITPAIIIALVTSPFMLVK 299 Query: 301 MVCVWTAVQLIEGKFISPQIMGKTLKXXXXXXXXXXXFAGKMFGVLGIILAVPGYAVLKV 360 ++ VWT VQL EGKFISPQIMGK L A K+FGV+G+ILA+PGYAV+KV Sbjct: 300 LIIVWTVVQLFEGKFISPQIMGKNLHIHPVTIIFVLLTAAKLFGVIGVILAIPGYAVIKV 359 Query: 361 VVTHVFQWFRFRSGLYKQIEE 381 VVTH+F+WF+ RS LY++ EE Sbjct: 360 VVTHLFEWFKQRSHLYEKNEE 380 >A7Z831.1 A7Z831_BACA2 YubA Length = 386 Score = 347 bits (891), Expect = 8e-94, Method: Compositional matrix adjust. Identities = 182/378 (48%), Positives = 249/378 (65%), Gaps = 1/378 (0%) Query: 1 MERLQVWPEKFKKFFLNNRFXXXXXXXXXXXXXXXXFAKIPFIFKPISVLLHTVAAPLLL 60 ME LQ W +FK+FFL+N+F F K FIF PI VLL T+A P++L Sbjct: 1 METLQTWGGRFKQFFLDNKFVLFLLVLLLIGLNILVFMKTSFIFTPIIVLLKTIALPVIL 60 Query: 61 SGIAYYLLNPLVDRMEKRSKIRRPYGIVXXXXXXXXXXXXXXXXXXPMIRTQLVGLIDNF 120 +GI YYLLNP+VD +EK +++R Y I+ P ++ Q++ LIDN Sbjct: 61 TGIVYYLLNPIVDILEK-IRVKRVYSILLLYLIIIGLITITVVSIIPFLKEQIMSLIDNL 119 Query: 121 PKYSDQIQQEFIDLTGSKLFEQIQENVGTDFTDITSKVTTWGTSFLNNAVSGVGNFVGAL 180 PKY D ++ + L GS Q Q+ + + +D+ +KV+ + N+ +GVGNF+GAL Sbjct: 120 PKYVDIVEDQTKSLIGSDFVNQAQKTMNINISDLANKVSAQAATIANSTFTGVGNFIGAL 179 Query: 181 TEIVLALVTTPFILFYLLRDGKRLPDYLMRFIPTALRPQTRMVMSEMNSQVASYIRGQII 240 TE+++++VT PFILFYLL+DGK+LP Y+++F+PT L+ QT ++SEMN +++SYIRGQ+I Sbjct: 180 TEVIISIVTVPFILFYLLKDGKKLPIYILKFVPTRLKEQTYTMLSEMNHRLSSYIRGQVI 239 Query: 241 VSCCXXXXXXXXXXXXXXXXSLVLAIVAACTAVVPYLGPAIAITPALIVALVTSPFMLLK 300 VS C + +LA++AACT+VVPYLGP IAITPA+I+ALVTSP MLLK Sbjct: 240 VSFCIGFLLFIGYLIIGLDYASLLAVIAACTSVVPYLGPTIAITPAIIIALVTSPLMLLK 299 Query: 301 MVCVWTAVQLIEGKFISPQIMGKTLKXXXXXXXXXXXFAGKMFGVLGIILAVPGYAVLKV 360 + VWT VQL+EGK ISPQIMGK L AGK+FGV+GIILA+PGYAV+KV Sbjct: 300 LAIVWTVVQLVEGKLISPQIMGKNLHIHPITIIFVLLTAGKLFGVVGIILAIPGYAVIKV 359 Query: 361 VVTHVFQWFRFRSGLYKQ 378 V TH+F WF+ RS LY++ Sbjct: 360 VTTHLFDWFKMRSHLYEE 377 >A0AG37.1 A0AG37_LISW6 Complete genome Length = 389 Score = 347 bits (891), Expect = 9e-94, Method: Compositional matrix adjust. Identities = 182/374 (48%), Positives = 250/374 (66%), Gaps = 1/374 (0%) Query: 10 KFKKFFLNNRFXXXXXXXXXXXXXXXXFAKIPFIFKPISVLLHTVAAPLLLSGIAYYLLN 69 KFK+FF+ N+F KI FIF P+ V+L TVAAP++L+GI+YYL N Sbjct: 7 KFKQFFIENKFVLGLLIFLLVALDIYVLTKISFIFDPLMVILKTVAAPIILAGISYYLFN 66 Query: 70 PLVDRMEKRSKIRRPYGIVXXXXXXXXXXXXXXXXXXPMIRTQLVGLIDNFPKYSDQIQQ 129 P++D +EK+ K +R + I P ++ Q+V L +FP Y DQI Q Sbjct: 67 PIIDWLEKK-KWKRGWAIALLYIVIIGLIILLFSFVIPAVKDQIVSLFKSFPGYWDQITQ 125 Query: 130 EFIDLTGSKLFEQIQENVGTDFTDITSKVTTWGTSFLNNAVSGVGNFVGALTEIVLALVT 189 F + + S LF+Q+++ + T+ +DI ++T GTS +N+A+S +GN VG +TE+VLA+VT Sbjct: 126 RFNEFSRSSLFDQLKDKLSTNMSDIMKTISTKGTSVVNSAISSIGNIVGTVTEVVLAIVT 185 Query: 190 TPFILFYLLRDGKRLPDYLMRFIPTALRPQTRMVMSEMNSQVASYIRGQIIVSCCXXXXX 249 TP +LFYLL+DGK+LPD+L++ +P R TR V+ E N Q++SYIRGQIIVS C Sbjct: 186 TPLVLFYLLKDGKKLPDFLLKMLPVNGRAHTRQVLGEANHQISSYIRGQIIVSLCIGILL 245 Query: 250 XXXXXXXXXXXSLVLAIVAACTAVVPYLGPAIAITPALIVALVTSPFMLLKMVCVWTAVQ 309 +L LAI+AACT++VPYLGPAIAITPA+I+A+VTSP++L+K++ VW VQ Sbjct: 246 FIGYLIIGLPYALTLAIIAACTSIVPYLGPAIAITPAIIIAIVTSPWLLIKLIIVWCVVQ 305 Query: 310 LIEGKFISPQIMGKTLKXXXXXXXXXXXFAGKMFGVLGIILAVPGYAVLKVVVTHVFQWF 369 L+EGKFISPQ+MGKTLK AG +FGVLG+I AVPGYAVLKV+VTHVF WF Sbjct: 306 LLEGKFISPQVMGKTLKVHPITILFVILVAGNLFGVLGVIFAVPGYAVLKVIVTHVFIWF 365 Query: 370 RFRSGLYKQIEETK 383 + SGLY + E++ Sbjct: 366 KRVSGLYGEQPESE 379 >Q722W6.1 Q722W6_LISMF Putative membrane protein Length = 390 Score = 346 bits (888), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 182/374 (48%), Positives = 250/374 (66%), Gaps = 1/374 (0%) Query: 10 KFKKFFLNNRFXXXXXXXXXXXXXXXXFAKIPFIFKPISVLLHTVAAPLLLSGIAYYLLN 69 KFK+FF+ N+F KI FIF P+ V+L TVAAP++L+GI+YYL N Sbjct: 7 KFKQFFIENKFVLGLLIFLLVALDIYVLTKIAFIFDPLMVILKTVAAPIILAGISYYLFN 66 Query: 70 PLVDRMEKRSKIRRPYGIVXXXXXXXXXXXXXXXXXXPMIRTQLVGLIDNFPKYSDQIQQ 129 P++D +EK K +R + I P ++ Q+V L +FP Y DQI Q Sbjct: 67 PIIDWLEKH-KWKRGWAIALLYLVIIGLLILLFSFVIPAVKDQIVSLFKSFPGYWDQITQ 125 Query: 130 EFIDLTGSKLFEQIQENVGTDFTDITSKVTTWGTSFLNNAVSGVGNFVGALTEIVLALVT 189 +F + + S LF+QI++ + T+ +DI ++T GTS +N+A+S +G+ VG +TE+VLA+VT Sbjct: 126 KFDEFSRSSLFDQIKDKLNTNMSDIMKTLSTKGTSVINSAISSIGSIVGTVTEVVLAIVT 185 Query: 190 TPFILFYLLRDGKRLPDYLMRFIPTALRPQTRMVMSEMNSQVASYIRGQIIVSCCXXXXX 249 TP +LFYLL+DGK+LPD+L++ +P R TR V+ E N Q++SYIRGQIIVS C Sbjct: 186 TPLVLFYLLKDGKKLPDFLLKMLPVNGRAHTRQVLGEANHQISSYIRGQIIVSLCIGILL 245 Query: 250 XXXXXXXXXXXSLVLAIVAACTAVVPYLGPAIAITPALIVALVTSPFMLLKMVCVWTAVQ 309 +L LAI+AACT++VPYLGPAIAITPA+I+A+VTSP++L+K++ VW VQ Sbjct: 246 FIGYLIIGLPYALTLAIIAACTSIVPYLGPAIAITPAIIIAIVTSPWLLIKLIIVWCVVQ 305 Query: 310 LIEGKFISPQIMGKTLKXXXXXXXXXXXFAGKMFGVLGIILAVPGYAVLKVVVTHVFQWF 369 L+EGKFISPQ+MGKTLK AG +FGVLG+I AVPGYAVLKV+VTHVF WF Sbjct: 306 LLEGKFISPQVMGKTLKVHPITILFVILVAGNLFGVLGVIFAVPGYAVLKVIVTHVFIWF 365 Query: 370 RFRSGLYKQIEETK 383 + SGLY + E++ Sbjct: 366 KRISGLYGEQPESE 379 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.142 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,772,899,967 Number of extensions: 59987091 Number of successful extensions: 205398 Number of sequences better than 1.0e-05: 2103 Number of HSP's gapped: 202232 Number of HSP's successfully gapped: 2106 Length of query: 384 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 247 Effective length of database: 1,770,017,148 Effective search space: 437194235556 Effective search space used: 437194235556 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 132 (55.5 bits)