BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0054.0010.p
         (119 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B7GLU3.1 B7GLU3_ANOFW 2Fe-2S ferredoxin                               108   1e-22
C5DAM8.1 C5DAM8_9BACI Cobalamin biosynthesis protein                   99   1e-19
Q5KYZ1.1 Q5KYZ1_GEOKA Cobalamin biosynthesis protein                   96   8e-19
B4BML7.1 B4BML7_9BACI Putative ferredoxin                              96   1e-18
Q9KFV4.1 Q9KFV4_BACHD BH0367 protein                                   95   3e-18

>B7GLU3.1 B7GLU3_ANOFW 2Fe-2S ferredoxin
          Length = 123

 Score =  108 bits (271), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 50/103 (48%), Positives = 64/103 (62%), Gaps = 1/103 (0%)

Query: 1   MTTWNLQGTLSHLLICGGSSCRKNAGXXXXXXXXXXXXKQGAASKIHTTVTECNGRCSDA 60
           M TWNLQGT  H+LIC G SC +  G            K    + +HTT T CNGRC DA
Sbjct: 4   MATWNLQGTKHHVLICNGGSCMRKGGEEVTQAIRDEIDKLQLHTHVHTTRTRCNGRCEDA 63

Query: 61  CIVIAYPEGVWYREMTPKAGKKLVRKMLK-GKQLEDHILYTYD 102
           C+VI YPEG+WYR +  + G+ +VRK +K G+ L D++ YTYD
Sbjct: 64  CVVIVYPEGIWYRTIDEQVGRDIVRKHVKDGEVLLDYVTYTYD 106


>C5DAM8.1 C5DAM8_9BACI Cobalamin biosynthesis protein
          Length = 132

 Score = 99.0 bits (245), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/103 (46%), Positives = 61/103 (59%), Gaps = 1/103 (0%)

Query: 1   MTTWNLQGTLSHLLICGGSSCRKNAGXXXXXXXXXXXXKQGAASKIHTTVTECNGRCSDA 60
           MTTWNL G   H+LIC G SC +  G                   +HTT T CNGRC DA
Sbjct: 1   MTTWNLIGMKHHVLICNGGSCMRKGGEEVTLAIREEIAMLELDGIVHTTRTRCNGRCQDA 60

Query: 61  CIVIAYPEGVWYREMTPKAGKKLVRKMLK-GKQLEDHILYTYD 102
           C+VI YPEGVWY  +TP+  ++LVR+ L+ G+ LE+ I Y Y+
Sbjct: 61  CVVIVYPEGVWYNGVTPEKARELVRRHLRDGEWLEETITYRYE 103


>Q5KYZ1.1 Q5KYZ1_GEOKA Cobalamin biosynthesis protein
          Length = 132

 Score = 96.3 bits (238), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 62/103 (60%), Gaps = 1/103 (0%)

Query: 1   MTTWNLQGTLSHLLICGGSSCRKNAGXXXXXXXXXXXXKQGAASKIHTTVTECNGRCSDA 60
           M TW+L+G   H+LIC G +C ++ G            + G    +HTT T CNGRC DA
Sbjct: 1   MATWDLRGMKHHVLICNGGTCLRHGGDDVTTAVREEIARLGLDDAVHTTRTRCNGRCQDA 60

Query: 61  CIVIAYPEGVWYREMTPKAGKKLVRKML-KGKQLEDHILYTYD 102
           C++I YP+G+WYR+MTP+  K++VR  L +G  + +   Y Y+
Sbjct: 61  CVMIVYPQGIWYRQMTPERAKEVVRAHLGEGVPMREWATYEYE 103


>B4BML7.1 B4BML7_9BACI Putative ferredoxin
          Length = 132

 Score = 95.9 bits (237), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 61/103 (59%), Gaps = 1/103 (0%)

Query: 1   MTTWNLQGTLSHLLICGGSSCRKNAGXXXXXXXXXXXXKQGAASKIHTTVTECNGRCSDA 60
           M TW+L+G   H+LIC G +C ++ G            + G    +HTT T CNGRC DA
Sbjct: 1   MATWDLRGMKHHVLICNGGTCLRHGGDDVTTAVREEIARLGLDDAVHTTRTRCNGRCQDA 60

Query: 61  CIVIAYPEGVWYREMTPKAGKKLVRKML-KGKQLEDHILYTYD 102
           C++I YP+GVWYR+MTP+  K++ R  L +G  L +   Y Y+
Sbjct: 61  CVMIVYPDGVWYRQMTPEKAKEVARVHLGEGVPLREWATYEYE 103


>Q9KFV4.1 Q9KFV4_BACHD BH0367 protein
          Length = 129

 Score = 94.7 bits (234), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 42/102 (41%), Positives = 58/102 (56%)

Query: 1   MTTWNLQGTLSHLLICGGSSCRKNAGXXXXXXXXXXXXKQGAASKIHTTVTECNGRCSDA 60
           M TWNL  T  H+LIC GSSC K                +G    IHTT T CNGRC D 
Sbjct: 1   MATWNLTKTKHHVLICNGSSCNKAGAEQLTRSIRAEIMAKGLDPIIHTTRTLCNGRCQDK 60

Query: 61  CIVIAYPEGVWYREMTPKAGKKLVRKMLKGKQLEDHILYTYD 102
           C++I YP G WY+EM+ +   + V  +L G+++E+ I +T++
Sbjct: 61  CVLITYPSGHWYKEMSSEDAPRFVDSLLSGRRVEEKISHTFN 102


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.319    0.133    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 532,689,797
Number of extensions: 14868558
Number of successful extensions: 25315
Number of sequences better than 1.0e-05: 26
Number of HSP's gapped: 25344
Number of HSP's successfully gapped: 26
Length of query: 119
Length of database: 3,060,696,203
Length adjustment: 85
Effective length of query: 34
Effective length of database: 2,259,909,928
Effective search space: 76836937552
Effective search space used: 76836937552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)