BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0054.0004.p (346 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DET6.1 B1DET6_9BACL FAD-dependent pyridine nucleotide-disulphi... 561 e-158 B3KFA2.1 B3KFA2_9BACI FAD-dependent pyridine nucleotide-disulphi... 560 e-158 C0ZCP3.1 C0ZCP3_BREBN Putative uncharacterized protein 543 e-153 B1I067.1 FENR2_LYSSC Ferredoxin--NADP reductase 2 EC=1.18.1.2 501 e-140 A3IES3.1 A3IES3_9BACI Thioredoxin reductase 499 e-139 >B1DET6.1 B1DET6_9BACL FAD-dependent pyridine nucleotide-disulphide oxidoreductase Length = 345 Score = 561 bits (1446), Expect = e-158, Method: Compositional matrix adjust. Identities = 265/344 (77%), Positives = 301/344 (87%) Query: 1 MSKELELYDVTIIGGGPAGMYTAFYSGMRDLKTKLIEAKEELGGRMLIYPEKMIWDVGGV 60 M+++LELYDVTIIGGGPAGMYTAFYSGMRDLKTKLIEAK ELGGRMLIYPEKMIWDVGGV Sbjct: 1 MTEQLELYDVTIIGGGPAGMYTAFYSGMRDLKTKLIEAKNELGGRMLIYPEKMIWDVGGV 60 Query: 61 TPILCRKLIDQLAEQARTFDPTIVLGQQIIGQERQEDGTYILTSATGERHWTRTIILTIG 120 PILC KLIDQL EQA+TFDPTIV GQ IIG E+Q D TYIL +ATGE+HWTRT+IL IG Sbjct: 61 APILCEKLIDQLKEQAKTFDPTIVFGQHIIGLEKQADSTYILEAATGEKHWTRTVILAIG 120 Query: 121 YGILQMAKLEIEGADRYEVTNLHYTVQELEPFRGKRVLISGGGDSAVDWANELEPIAASV 180 GIL+MAKLE+ GA+RYEV+NLHYTVQELEPFRGKRVLISGGG+S VDWANEL PIAA V Sbjct: 121 RGILRMAKLELAGAERYEVSNLHYTVQELEPFRGKRVLISGGGNSTVDWANELIPIAAQV 180 Query: 181 TIVHRREQFGGHEKNIARMKASSVQVRVPHTVSQLHSSDGEKIDQVTISHIESGESEQLE 240 +VHRR++FGGHEKNI RMK SS V P+ V+QL+S +G+ I++VTI+HIESG+S +LE Sbjct: 181 MVVHRRDRFGGHEKNIVRMKESSADVLTPYEVTQLYSGNGKTIERVTITHIESGDSRELE 240 Query: 241 VDAVIVNHGLKSDFGPLKDWGLDMGEWWANVSSRLETNLPGVFAAGDFVDYSSKVRLIAG 300 +D VIVNHGLKSDF +KDWGLDM +W VS RLETNLPG+F AGDF +Y SK+ LIAG Sbjct: 241 IDEVIVNHGLKSDFTGIKDWGLDMDDWNIFVSPRLETNLPGIFGAGDFANYESKLNLIAG 300 Query: 301 TFTDAVLALNSAKLYMDPDAPKVAYVSSHNERFKEKNKALGVVD 344 FTDA LALNSAK YMDP+AP++AYVSSHNERFKE+NKALGV D Sbjct: 301 AFTDAALALNSAKRYMDPEAPRMAYVSSHNERFKERNKALGVSD 344 >B3KFA2.1 B3KFA2_9BACI FAD-dependent pyridine nucleotide-disulphide oxidoreductase Length = 345 Score = 560 bits (1443), Expect = e-158, Method: Compositional matrix adjust. Identities = 265/344 (77%), Positives = 301/344 (87%) Query: 1 MSKELELYDVTIIGGGPAGMYTAFYSGMRDLKTKLIEAKEELGGRMLIYPEKMIWDVGGV 60 M+++LE+YDVTIIGGGPAGMYTAFYSGMRDLKTKLIEAK+ELGGRMLIYPEKMIWDVGGV Sbjct: 1 MTEQLEIYDVTIIGGGPAGMYTAFYSGMRDLKTKLIEAKDELGGRMLIYPEKMIWDVGGV 60 Query: 61 TPILCRKLIDQLAEQARTFDPTIVLGQQIIGQERQEDGTYILTSATGERHWTRTIILTIG 120 PILC LI QL+EQA TFDPTIV GQ IIG E+Q D TYIL +ATGERHWTRT+IL IG Sbjct: 61 PPILCENLIAQLSEQAMTFDPTIVFGQHIIGLEKQADSTYILEAATGERHWTRTVILAIG 120 Query: 121 YGILQMAKLEIEGADRYEVTNLHYTVQELEPFRGKRVLISGGGDSAVDWANELEPIAASV 180 GIL+MAKLE+EGA+RYEV+NLHYTVQELEPFRGKRVLISGGG+SAVDWANEL PIA V Sbjct: 121 RGILRMAKLELEGAERYEVSNLHYTVQELEPFRGKRVLISGGGNSAVDWANELVPIAGQV 180 Query: 181 TIVHRREQFGGHEKNIARMKASSVQVRVPHTVSQLHSSDGEKIDQVTISHIESGESEQLE 240 T+VHRR++FGGHEKNI RMK SS V P+ V+QL S +G+ I++VTI+H+ESG+S Q+E Sbjct: 181 TVVHRRDRFGGHEKNIVRMKESSADVLTPYEVTQLFSGNGKTIERVTITHLESGDSRQIE 240 Query: 241 VDAVIVNHGLKSDFGPLKDWGLDMGEWWANVSSRLETNLPGVFAAGDFVDYSSKVRLIAG 300 +D VIVNHGLKSDF +KDWGLDM EW VS RLETNLPG+F AGDF +Y SK+ LIAG Sbjct: 241 IDEVIVNHGLKSDFTGIKDWGLDMDEWNIFVSPRLETNLPGIFGAGDFANYESKLNLIAG 300 Query: 301 TFTDAVLALNSAKLYMDPDAPKVAYVSSHNERFKEKNKALGVVD 344 FTDA LALNSAK YMDP+AP++AYVSSHNERFKE+NKALGV D Sbjct: 301 AFTDAALALNSAKRYMDPEAPRMAYVSSHNERFKERNKALGVSD 344 >C0ZCP3.1 C0ZCP3_BREBN Putative uncharacterized protein Length = 348 Score = 543 bits (1399), Expect = e-153, Method: Compositional matrix adjust. Identities = 258/344 (75%), Positives = 296/344 (86%) Query: 1 MSKELELYDVTIIGGGPAGMYTAFYSGMRDLKTKLIEAKEELGGRMLIYPEKMIWDVGGV 60 M ++LEL+DVTIIGGGPAGMY AFYSGMRD+KTKLIEAKEELGGRMLIYPEKMIWDVGGV Sbjct: 1 MGEQLELFDVTIIGGGPAGMYAAFYSGMRDMKTKLIEAKEELGGRMLIYPEKMIWDVGGV 60 Query: 61 TPILCRKLIDQLAEQARTFDPTIVLGQQIIGQERQEDGTYILTSATGERHWTRTIILTIG 120 P LC KLI L +QA+TFDPTIVLG+ IIG E QEDGTYIL + +G RHWTRTIIL +G Sbjct: 61 PPQLCEKLIANLVQQAKTFDPTIVLGEAIIGLEPQEDGTYILVAKSGRRHWTRTIILALG 120 Query: 121 YGILQMAKLEIEGADRYEVTNLHYTVQELEPFRGKRVLISGGGDSAVDWANELEPIAASV 180 GIL+MAKLEIEGA+RYEVTNLHYTVQELEPFRGK VLISGGGDSAVDWANEL IAASV Sbjct: 121 RGILKMAKLEIEGAERYEVTNLHYTVQELEPFRGKHVLISGGGDSAVDWANELVQIAASV 180 Query: 181 TIVHRREQFGGHEKNIARMKASSVQVRVPHTVSQLHSSDGEKIDQVTISHIESGESEQLE 240 T+VHRR+ FGGHE+N+ RMK SS VR P+ V+QL SSD E ID+VTI H+E+ E+EQ+ Sbjct: 181 TVVHRRDVFGGHERNVKRMKESSAIVRTPYAVTQLQSSDKETIDKVTIRHLETDETEQIN 240 Query: 241 VDAVIVNHGLKSDFGPLKDWGLDMGEWWANVSSRLETNLPGVFAAGDFVDYSSKVRLIAG 300 VDA+IVNHGLK+DF +K+WGLDM EW VS RL TNLPG+FAAGDF + SK+ LIAG Sbjct: 241 VDAIIVNHGLKADFTGIKEWGLDMDEWNVFVSPRLATNLPGIFAAGDFASFDSKITLIAG 300 Query: 301 TFTDAVLALNSAKLYMDPDAPKVAYVSSHNERFKEKNKALGVVD 344 FTDA +A+NSAKL++DP A ++AYVSSHN+RFKEKNKALGV+D Sbjct: 301 AFTDAAVAVNSAKLHIDPVADRMAYVSSHNQRFKEKNKALGVID 344 >B1I067.1 FENR2_LYSSC Ferredoxin--NADP reductase 2 EC=1.18.1.2 Length = 349 Score = 501 bits (1290), Expect = e-140, Method: Compositional matrix adjust. Identities = 242/341 (70%), Positives = 289/341 (84%), Gaps = 1/341 (0%) Query: 4 ELELYDVTIIGGGPAGMYTAFYSGMRDLKTKLIEAKEELGGRMLIYPEKMIWDVGGVTPI 63 E ELYDVTI+GGGPAG+YTAFYSGMRDLKTK+IE +LGGRMLIYPEKMIWDVGGVTPI Sbjct: 2 ENELYDVTIVGGGPAGLYTAFYSGMRDLKTKIIEYSSQLGGRMLIYPEKMIWDVGGVTPI 61 Query: 64 LCRKLIDQLAEQARTFDPTIVLGQQIIGQERQEDGTYILTSATGERHWTRTIILTIGYGI 123 L +LI QL EQA+TFDPTI+L Q++ G E+Q DGT+ILTS+TGE+H+++T+IL +GYG+ Sbjct: 62 LGGQLIKQLVEQAQTFDPTIILNQKVEGLEKQPDGTFILTSSTGEKHFSKTVILAVGYGV 121 Query: 124 LQMAKLEIEGADRYEVTNLHYTVQELEPFRGKRVLISGGGDSAVDWANELEPIAASVTIV 183 L M KLEIEGADRYEVTNLHYTVQELE FR K VLISGGG+SAVDWANELEPIAASVTIV Sbjct: 122 LTMQKLEIEGADRYEVTNLHYTVQELEIFRNKHVLISGGGNSAVDWANELEPIAASVTIV 181 Query: 184 HRREQFGGHEKNIARMKASSVQVRVPHTVSQLHSSDGEKIDQVTISHIESGESEQLEVDA 243 HRRE FGGHEKN+ RMK SSV V+ P V QLH SDG+ I V+I + E+ E E++EVDA Sbjct: 182 HRREDFGGHEKNVLRMKESSVCVKTPFEVVQLH-SDGDLIQFVSIMNKETNEIERVEVDA 240 Query: 244 VIVNHGLKSDFGPLKDWGLDMGEWWANVSSRLETNLPGVFAAGDFVDYSSKVRLIAGTFT 303 VIVNHGLK D+G L++WGL + + A V+ + ETN+ G++ AGDF+D+ SKVRLIAG FT Sbjct: 241 VIVNHGLKCDYGALEEWGLHIKDGVALVNEKRETNIEGIYGAGDFIDHPSKVRLIAGAFT 300 Query: 304 DAVLALNSAKLYMDPDAPKVAYVSSHNERFKEKNKALGVVD 344 D +LALNSAKL ++PDAPKVAYVSSHN RFKE+N+ +G+ D Sbjct: 301 DGILALNSAKLLIEPDAPKVAYVSSHNIRFKERNEKIGLQD 341 >A3IES3.1 A3IES3_9BACI Thioredoxin reductase Length = 349 Score = 499 bits (1285), Expect = e-139, Method: Compositional matrix adjust. Identities = 240/339 (70%), Positives = 289/339 (85%), Gaps = 1/339 (0%) Query: 6 ELYDVTIIGGGPAGMYTAFYSGMRDLKTKLIEAKEELGGRMLIYPEKMIWDVGGVTPILC 65 ELYDVTI+GGGPAG+YTAFYSGMRDLKTK+IE +LGGRMLIYPEKMIWDVGGVTPIL Sbjct: 4 ELYDVTIVGGGPAGLYTAFYSGMRDLKTKIIEYSSQLGGRMLIYPEKMIWDVGGVTPILG 63 Query: 66 RKLIDQLAEQARTFDPTIVLGQQIIGQERQEDGTYILTSATGERHWTRTIILTIGYGILQ 125 +LI+QL EQA+TFDPTIVL Q++ G E+Q DGT+ILTS+TGE+H+++T+IL +GYG+L Sbjct: 64 GQLINQLVEQAQTFDPTIVLNQKVEGLEKQPDGTFILTSSTGEKHYSKTVILAVGYGVLT 123 Query: 126 MAKLEIEGADRYEVTNLHYTVQELEPFRGKRVLISGGGDSAVDWANELEPIAASVTIVHR 185 M KLEIEGADRYEVTNLHYTVQELE FR K VLISGGG+SAVDWANELEPIAASVTIVHR Sbjct: 124 MQKLEIEGADRYEVTNLHYTVQELEIFRNKHVLISGGGNSAVDWANELEPIAASVTIVHR 183 Query: 186 REQFGGHEKNIARMKASSVQVRVPHTVSQLHSSDGEKIDQVTISHIESGESEQLEVDAVI 245 R+ FGGHEKN+ R+ SSV V+ P+ V QLH SDG+ I V+I + E+ E E++EVDAVI Sbjct: 184 RDDFGGHEKNVLRINESSVCVKTPYEVVQLH-SDGDLIQSVSIMNKETEEIERVEVDAVI 242 Query: 246 VNHGLKSDFGPLKDWGLDMGEWWANVSSRLETNLPGVFAAGDFVDYSSKVRLIAGTFTDA 305 VNHGLK D+G L++WGL + + A V+ + ETN+ G++ AGDF+D+ SKVRLIAG FTD Sbjct: 243 VNHGLKCDYGALEEWGLHIEDGVALVNEKRETNIEGIYGAGDFIDHPSKVRLIAGAFTDG 302 Query: 306 VLALNSAKLYMDPDAPKVAYVSSHNERFKEKNKALGVVD 344 VLALNSAKL ++PDAPKVAYVSSHN RFKE+N+ +G+ D Sbjct: 303 VLALNSAKLLIEPDAPKVAYVSSHNIRFKERNEKIGLQD 341 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.135 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,093,899,308 Number of extensions: 87489909 Number of successful extensions: 280321 Number of sequences better than 1.0e-05: 2800 Number of HSP's gapped: 276093 Number of HSP's successfully gapped: 2802 Length of query: 346 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 210 Effective length of database: 1,779,438,163 Effective search space: 373682014230 Effective search space used: 373682014230 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)