BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0054.0003.p (278 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0ZJ93.1 C0ZJ93_BREBN Probable ABC transporter permease protein 307 7e-82 A3IES4.1 A3IES4_9BACI Putative uncharacterized protein 269 2e-70 B1I066.1 B1I066_LYSSC Putative uncharacterized protein 267 9e-70 B1D643.1 B1D643_9BACL Transport system permease protein 259 2e-67 B1IEU5.1 B1IEU5_CLOBK Ferrichrome ABC transporter, permease prot... 251 6e-65 >C0ZJ93.1 C0ZJ93_BREBN Probable ABC transporter permease protein Length = 343 Score = 307 bits (786), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 170/309 (55%), Positives = 191/309 (61%), Gaps = 47/309 (15%) Query: 17 VNTGYIRXXXXXXXXXXXGRGTDKQELILFDFRLPRIVISILVGAGLAVSGAVMQGVFRN 76 +NTGYIR G GTDKQ LILF+FRLPRIVIS+L+GAGLAVSG ++QG+ RN Sbjct: 35 MNTGYIRLSPSDLLMTLIGSGTDKQSLILFEFRLPRIVISLLIGAGLAVSGCIIQGISRN 94 Query: 77 DLADPGILGINAGAGLMVML---------------------------------------- 96 LA+PGILGINAGAGLMVML Sbjct: 95 ALAEPGILGINAGAGLMVMLFISFYPSTSAAPVFLLPVLALLGASVTAALIFVLSYKRHK 154 Query: 97 -------LLTXXXXXXXXXXXXIVLTLRLDPDKYQFVATWLAGSIWGTSWKFVLSLLPWI 149 +LT IVLTL+L PDKYQFVATWLAGSIWGT+WKFVLSLLPWI Sbjct: 155 GLSPTRIILTGIAVAAGMSAAMIVLTLKLSPDKYQFVATWLAGSIWGTNWKFVLSLLPWI 214 Query: 150 LIQLPYVIYKARVMNVLNLGDQTVTGLGAAVTKEQFRLPXXXXXXXXXXXXXXXXIGFVG 209 +I +PYV YKARVMNVLNLG++ GLGA V KEQ +L IGFVG Sbjct: 215 VILIPYVFYKARVMNVLNLGEELAKGLGAPVAKEQLKLLAAAVGLAASCVAVSGGIGFVG 274 Query: 210 LIGPHLARRLVGPKHQXXXXXXXXXXXXXXXTADTMGRRILQPSEIPTGIVVAVIGAPYF 269 LIGPHLARRLVGPKH+ ADT+GR I+QPSEIPTGIVVAVIGAPYF Sbjct: 275 LIGPHLARRLVGPKHEMLLPTSALAGALLVIVADTIGRWIMQPSEIPTGIVVAVIGAPYF 334 Query: 270 LYLLARTKS 278 LYLLAR+K+ Sbjct: 335 LYLLARSKA 343 >A3IES4.1 A3IES4_9BACI Putative uncharacterized protein Length = 344 Score = 269 bits (688), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 153/309 (49%), Positives = 182/309 (58%), Gaps = 47/309 (15%) Query: 17 VNTGYIRXXXXXXXXXXXGRGTDKQELILFDFRLPRIVISILVGAGLAVSGAVMQGVFRN 76 +NTG I+ G+G +Q+LILF+FRLPRIVI+ILVG GLA+SGA++QGV +N Sbjct: 36 MNTGVIKLTPMEVFKTLFGQGDAQQQLILFEFRLPRIVIAILVGMGLAISGAILQGVSKN 95 Query: 77 DLADPGILGINAGAGLMVML---------------------------------------- 96 LADPGILGINAGAGL VML Sbjct: 96 ALADPGILGINAGAGLAVMLYISFFPTTKAAPVYLLPVLAFIGAGLTAILIYSLSYKRHE 155 Query: 97 -------LLTXXXXXXXXXXXXIVLTLRLDPDKYQFVATWLAGSIWGTSWKFVLSLLPWI 149 +LT IVLTLRL P+ YQFVATWLAGSIWG++W+FVLSLLPW+ Sbjct: 156 GITPMRLILTGVAVAAGISSAMIVLTLRLSPENYQFVATWLAGSIWGSNWRFVLSLLPWL 215 Query: 150 LIQLPYVIYKARVMNVLNLGDQTVTGLGAAVTKEQFRLPXXXXXXXXXXXXXXXXIGFVG 209 +I LP+V K+RV+N+LNLG+ T GLGA++ KE+ L IGFVG Sbjct: 216 VILLPFVYAKSRVLNILNLGELTAVGLGASIEKERRWLLAAAVGLAGASVSVSGGIGFVG 275 Query: 210 LIGPHLARRLVGPKHQXXXXXXXXXXXXXXXTADTMGRRILQPSEIPTGIVVAVIGAPYF 269 LI PHLAR+LVG KHQ ADT+GR IL+PSEIP GIVVAVIGAPYF Sbjct: 276 LIAPHLARQLVGAKHQFLLPAAALLGGFLVLMADTIGRSILEPSEIPAGIVVAVIGAPYF 335 Query: 270 LYLLARTKS 278 LYLLAR K Sbjct: 336 LYLLARLKE 344 >B1I066.1 B1I066_LYSSC Putative uncharacterized protein Length = 344 Score = 267 bits (682), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 151/309 (48%), Positives = 182/309 (58%), Gaps = 47/309 (15%) Query: 17 VNTGYIRXXXXXXXXXXXGRGTDKQELILFDFRLPRIVISILVGAGLAVSGAVMQGVFRN 76 +NTG I+ G+G +Q+LILF+FRLPRIVI++LVG GLA+SGA++QGV +N Sbjct: 36 MNTGVIKLTPLEVFKTLFGQGDAQQQLILFEFRLPRIVIAVLVGMGLAISGAILQGVSKN 95 Query: 77 DLADPGILGINAGAGLMVML---------------------------------------- 96 LADPGILGINAGAGL VML Sbjct: 96 ALADPGILGINAGAGLAVMLYISFFPTTKAAPVYLLPVLAFVGAGLTAVLIYSLSYKRHE 155 Query: 97 -------LLTXXXXXXXXXXXXIVLTLRLDPDKYQFVATWLAGSIWGTSWKFVLSLLPWI 149 +LT IVLTLRL P+ YQFVATWLAGSIWG++W+FVLSLLPW+ Sbjct: 156 GITPMRLILTGVAIAAGISSAMIVLTLRLSPENYQFVATWLAGSIWGSNWRFVLSLLPWL 215 Query: 150 LIQLPYVIYKARVMNVLNLGDQTVTGLGAAVTKEQFRLPXXXXXXXXXXXXXXXXIGFVG 209 +I LP+V K+RV+N+LNLG+ T GLGA++ +E+ L IGFVG Sbjct: 216 VILLPFVYAKSRVLNILNLGELTAVGLGASIERERRWLLAAAVGLAGASVSVSGGIGFVG 275 Query: 210 LIGPHLARRLVGPKHQXXXXXXXXXXXXXXXTADTMGRRILQPSEIPTGIVVAVIGAPYF 269 LI PHLAR+LVG KHQ ADT+GR IL+PSEIP GIVVAVIGAPYF Sbjct: 276 LIAPHLARQLVGAKHQFLLPAAALLGGFLVLMADTIGRSILEPSEIPAGIVVAVIGAPYF 335 Query: 270 LYLLARTKS 278 LYLLAR K Sbjct: 336 LYLLARLKE 344 >B1D643.1 B1D643_9BACL Transport system permease protein Length = 346 Score = 259 bits (663), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 144/309 (46%), Positives = 175/309 (56%), Gaps = 47/309 (15%) Query: 17 VNTGYIRXXXXXXXXXXXGRGTDKQELILFDFRLPRIVISILVGAGLAVSGAVMQGVFRN 76 +NTG+ R G GT + +LILF+FRLPRIVI+IL+GAGLAVSG +MQG+ RN Sbjct: 38 MNTGHSRLSPLDLLHTLLGDGTPQMDLILFEFRLPRIVIAILIGAGLAVSGCIMQGISRN 97 Query: 77 DLADPGILGINAGAGLMVM----------------------------------------- 95 LADPGI GINAGAGL V+ Sbjct: 98 ALADPGIFGINAGAGLFVLIFVAFFPSTTDAPVFLLPVLAWIGAGLTAALVFLLSYNRHK 157 Query: 96 ------LLLTXXXXXXXXXXXXIVLTLRLDPDKYQFVATWLAGSIWGTSWKFVLSLLPWI 149 LLL+ IVLTLR+ P+K+QFVATW+AGSIWGT+W +VL+LLP+I Sbjct: 158 GFSPTQLLLSGVGVAAGISAATIVLTLRISPEKFQFVATWMAGSIWGTNWSYVLALLPFI 217 Query: 150 LIQLPYVIYKARVMNVLNLGDQTVTGLGAAVTKEQFRLPXXXXXXXXXXXXXXXXIGFVG 209 + LP KAR M+ L+LG+ T GLG V+KEQ L IGFVG Sbjct: 218 AVLLPLAFLKARTMDALHLGESTARGLGVKVSKEQLVLLAAAVGLAGSCVAVSGGIGFVG 277 Query: 210 LIGPHLARRLVGPKHQXXXXXXXXXXXXXXXTADTMGRRILQPSEIPTGIVVAVIGAPYF 269 LIGPHLAR LVGP+HQ AD +GR +LQPSEIP GI+V +IGAPYF Sbjct: 278 LIGPHLARSLVGPRHQALLPASALIGSLLVVVADMLGRWLLQPSEIPAGIIVGIIGAPYF 337 Query: 270 LYLLARTKS 278 LYLLAR+K+ Sbjct: 338 LYLLARSKA 346 >B1IEU5.1 B1IEU5_CLOBK Ferrichrome ABC transporter, permease protein FhuG Length = 346 Score = 251 bits (640), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 137/309 (44%), Positives = 176/309 (56%), Gaps = 47/309 (15%) Query: 17 VNTGYIRXXXXXXXXXXXGRGTDKQELILFDFRLPRIVISILVGAGLAVSGAVMQGVFRN 76 ++TGYI+ G+GTDK++LILFDFRLPRIVIS+LVG+GLA+SG ++Q V +N Sbjct: 38 MDTGYIKMSPFDVLRTLFGKGTDKEKLILFDFRLPRIVISMLVGSGLALSGCIIQSVSKN 97 Query: 77 DLADPGILGINAGAGLMVML---------------------------------------- 96 LADPGILGINAG LMV+L Sbjct: 98 PLADPGILGINAGTSLMVILYVLIFSAESFLSVFTLPFLALIGAGITAVIVYIFSYKRDE 157 Query: 97 -------LLTXXXXXXXXXXXXIVLTLRLDPDKYQFVATWLAGSIWGTSWKFVLSLLPWI 149 +LT +L ++LD +Y FV W AGSIWG++WKFV++LLPW+ Sbjct: 158 GISTMRLVLTGVAVQAGISALTTLLVVKLDDTQYNFVVAWQAGSIWGSNWKFVMTLLPWL 217 Query: 150 LIQLPYVIYKARVMNVLNLGDQTVTGLGAAVTKEQFRLPXXXXXXXXXXXXXXXXIGFVG 209 I +PY++ K+ VM++LNL D GLG +V KE+ +L I FVG Sbjct: 218 AILIPYILTKSSVMDMLNLSDDIAYGLGVSVEKERRKLLAAAVALAASCVAVSGSISFVG 277 Query: 210 LIGPHLARRLVGPKHQXXXXXXXXXXXXXXXTADTMGRRILQPSEIPTGIVVAVIGAPYF 269 LI PHLARRLVGP+H+ ADT+GR I+QPSEIPTGIVVA+IGAPYF Sbjct: 278 LIAPHLARRLVGPRHRVLLSTSILVGAVLVSLADTIGRVIIQPSEIPTGIVVAIIGAPYF 337 Query: 270 LYLLARTKS 278 LYLL+ +KS Sbjct: 338 LYLLSNSKS 346 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.145 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,216,668,840 Number of extensions: 40324870 Number of successful extensions: 135828 Number of sequences better than 1.0e-05: 4623 Number of HSP's gapped: 127699 Number of HSP's successfully gapped: 7847 Length of query: 278 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 144 Effective length of database: 1,798,280,193 Effective search space: 258952347792 Effective search space used: 258952347792 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 130 (54.7 bits)