BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0054.0002.p (270 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0ZJ94.1 C0ZJ94_BREBN Probable ABC transporter permease protein 268 4e-70 B1D644.1 B1D644_9BACL Transport system permease protein 248 4e-64 A3IES5.1 A3IES5_9BACI Iron compound ABC transporter, permease pr... 247 7e-64 B1I065.1 B1I065_LYSSC Iron compound ABC transporter, permease pr... 246 1e-63 B3KCE5.1 B3KCE5_9BACI Transport system permease protein 244 6e-63 >C0ZJ94.1 C0ZJ94_BREBN Probable ABC transporter permease protein Length = 351 Score = 268 bits (685), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 144/270 (53%), Positives = 171/270 (63%) Query: 1 VLGGVIIGASFAVAGAIMQGMTRNPLADSGLMGINSXXXXXXXXXXXXMPNLPFMSLILY 60 +LGG ++GAS AVAGAIMQGMTRNPLADSGL+G+N+ P LPFM LILY Sbjct: 82 LLGGAMVGASLAVAGAIMQGMTRNPLADSGLLGLNAGAGFVLALCFAFFPGLPFMYLILY 141 Query: 61 SFXXXXXXXXIVYGVGSLAKGGLTPXXXXXXXXXXXXXXXXXXXXXXXHYKIGQDLALWY 120 SF +VYG+GSLAKGGLTP ++KIGQDLA WY Sbjct: 142 SFLGAGVGAGMVYGIGSLAKGGLTPVRLVLAGAALTALLSALSEGIALYFKIGQDLAFWY 201 Query: 121 AGGKAGTKWFQLKVMFPWVFAAILGDIVLSRSITMLSLGDEVARGLGQRTXXXXXXXXXX 180 AGG AGTKWFQL+VMFPW+ AA++G ++LSRSITMLSLG++VA+GLGQRT Sbjct: 202 AGGVAGTKWFQLEVMFPWIVAALIGAMMLSRSITMLSLGEDVAKGLGQRTALVKLAGMII 261 Query: 181 XXXXXXXXXXXXXXXXFIGLIIPHLTRYLVGVDYRWIFPCSXXXXXXXXXXXXXXXXXXI 240 F+GLI+PH+TR+LVGVDYRWI PCS Sbjct: 262 VLILAGSAVAVVGAVGFVGLIVPHMTRFLVGVDYRWIIPCSAILGSLLVVFADLAARMVN 321 Query: 241 PQHETPLGAVLALIGVPFFLYLARKERREL 270 P +ETPLGA++ALIGVPFFLYLARKERRE+ Sbjct: 322 PPYETPLGALIALIGVPFFLYLARKERREM 351 >B1D644.1 B1D644_9BACL Transport system permease protein Length = 343 Score = 248 bits (633), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 131/270 (48%), Positives = 162/270 (60%) Query: 1 VLGGVIIGASFAVAGAIMQGMTRNPLADSGLMGINSXXXXXXXXXXXXMPNLPFMSLILY 60 V+G +IG+SFAVAGAIMQGMTRNPLADSGL+G+N+ +P P++ LILY Sbjct: 74 VIGDALIGSSFAVAGAIMQGMTRNPLADSGLLGLNAGAGFALALCFAFVPGAPYLYLILY 133 Query: 61 SFXXXXXXXXIVYGVGSLAKGGLTPXXXXXXXXXXXXXXXXXXXXXXXHYKIGQDLALWY 120 SF +VYG+G+LA+GGLTP ++ IGQDLA W+ Sbjct: 134 SFVGAGVGAGLVYGIGALARGGLTPVRLVLAGAALSALLSSLSEGLSLYFHIGQDLAFWF 193 Query: 121 AGGKAGTKWFQLKVMFPWVFAAILGDIVLSRSITMLSLGDEVARGLGQRTXXXXXXXXXX 180 AGG AG KW Q+K++ PWV AA+LG + LSRSITMLSLG++VAR LG R+ Sbjct: 194 AGGVAGIKWLQVKILLPWVIAALLGAVALSRSITMLSLGEDVARSLGLRSGWVKMAGTVI 253 Query: 181 XXXXXXXXXXXXXXXXFIGLIIPHLTRYLVGVDYRWIFPCSXXXXXXXXXXXXXXXXXXI 240 F+GLI+PHLTR LVG+DYRWI PCS Sbjct: 254 VLILAGAAVSVAGAVGFVGLIVPHLTRRLVGIDYRWIIPCSAVLGGLLVVFADLGARMVN 313 Query: 241 PQHETPLGAVLALIGVPFFLYLARKERREL 270 P +ETP+GA+LALIGVPFF YLARK+RREL Sbjct: 314 PPYETPIGAILALIGVPFFFYLARKQRREL 343 >A3IES5.1 A3IES5_9BACI Iron compound ABC transporter, permease protein Length = 350 Score = 247 bits (631), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 131/270 (48%), Positives = 161/270 (59%) Query: 1 VLGGVIIGASFAVAGAIMQGMTRNPLADSGLMGINSXXXXXXXXXXXXMPNLPFMSLILY 60 VLG ++GASFAVAGAIMQGMTRNPLADSGL+G+NS P +P+M LIL+ Sbjct: 81 VLGAALVGASFAVAGAIMQGMTRNPLADSGLLGLNSGAAFMLAVCFAFFPGMPYMFLILW 140 Query: 61 SFXXXXXXXXIVYGVGSLAKGGLTPXXXXXXXXXXXXXXXXXXXXXXXHYKIGQDLALWY 120 SF IVYG+GSL+KGGLTP +Y+IGQDLA WY Sbjct: 141 SFIGAGLGVTIVYGIGSLSKGGLTPMRLVLAGAAVSALLGALGEGIALYYRIGQDLAFWY 200 Query: 121 AGGKAGTKWFQLKVMFPWVFAAILGDIVLSRSITMLSLGDEVARGLGQRTXXXXXXXXXX 180 AGG +GTKW L+++ PW+ A++G ++LSRSIT+LSLG+E+A GLGQRT Sbjct: 201 AGGVSGTKWSHLQILSPWILIAMIGALILSRSITVLSLGEEIAVGLGQRTGVVKVWGMII 260 Query: 181 XXXXXXXXXXXXXXXXFIGLIIPHLTRYLVGVDYRWIFPCSXXXXXXXXXXXXXXXXXXI 240 F+GLIIPHLTRY+VG DYRWI CS Sbjct: 261 VLILAGAAVSVVGAVGFVGLIIPHLTRYIVGHDYRWIIVCSLVYGALLVVLADLVARIIN 320 Query: 241 PQHETPLGAVLALIGVPFFLYLARKERREL 270 P +ETP+GA++A IGVPFFLYLARK +EL Sbjct: 321 PPYETPIGALIAFIGVPFFLYLARKGGKEL 350 >B1I065.1 B1I065_LYSSC Iron compound ABC transporter, permease protein Length = 350 Score = 246 bits (629), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 129/270 (47%), Positives = 161/270 (59%) Query: 1 VLGGVIIGASFAVAGAIMQGMTRNPLADSGLMGINSXXXXXXXXXXXXMPNLPFMSLILY 60 VLG ++GASFAVAGAIMQGMTRNPLADSGL+G+NS P +P++ LIL+ Sbjct: 81 VLGAALVGASFAVAGAIMQGMTRNPLADSGLLGLNSGAAFMLAVCFAFFPGMPYIFLILW 140 Query: 61 SFXXXXXXXXIVYGVGSLAKGGLTPXXXXXXXXXXXXXXXXXXXXXXXHYKIGQDLALWY 120 SF IVYG+GSL+KGGLTP +Y+IGQDLA WY Sbjct: 141 SFIGAGLGVAIVYGIGSLSKGGLTPMRLVLAGAAVSALLGALGEGIALYYRIGQDLAFWY 200 Query: 121 AGGKAGTKWFQLKVMFPWVFAAILGDIVLSRSITMLSLGDEVARGLGQRTXXXXXXXXXX 180 AGG +GTKW L+++ PW+ A++G ++LSRSIT+LSLG+E+A GLGQRT Sbjct: 201 AGGVSGTKWSHLQILSPWILIAMIGALILSRSITVLSLGEEIAVGLGQRTAVVKIWGMII 260 Query: 181 XXXXXXXXXXXXXXXXFIGLIIPHLTRYLVGVDYRWIFPCSXXXXXXXXXXXXXXXXXXI 240 F+GLI+PHLTRY+VG DYRWI CS Sbjct: 261 VLILAGAAVSVVGAVGFVGLIVPHLTRYIVGHDYRWIITCSLVYGALLVVLADLVARIIN 320 Query: 241 PQHETPLGAVLALIGVPFFLYLARKERREL 270 P +ETP+GA++A IGVPFFLYLARK +EL Sbjct: 321 PPYETPIGALIAFIGVPFFLYLARKGGKEL 350 >B3KCE5.1 B3KCE5_9BACI Transport system permease protein Length = 352 Score = 244 bits (623), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 136/270 (50%), Positives = 163/270 (60%) Query: 1 VLGGVIIGASFAVAGAIMQGMTRNPLADSGLMGINSXXXXXXXXXXXXMPNLPFMSLILY 60 VLGG ++GA FAV+GAIMQGMTRNPLADSGL+G+N+ P LP+M LIL+ Sbjct: 83 VLGGAMVGACFAVSGAIMQGMTRNPLADSGLLGLNAGAGFVIAICFAFFPGLPYMYLILF 142 Query: 61 SFXXXXXXXXIVYGVGSLAKGGLTPXXXXXXXXXXXXXXXXXXXXXXXHYKIGQDLALWY 120 SF +VYGV S+AKGGLTP ++++GQD+A WY Sbjct: 143 SFLGAGLGAVLVYGVSSMAKGGLTPVRLVLAGAALSALLSALSEGIALYFQVGQDMAFWY 202 Query: 121 AGGKAGTKWFQLKVMFPWVFAAILGDIVLSRSITMLSLGDEVARGLGQRTXXXXXXXXXX 180 AGG AG KW LK+M PW+ AAILG I LSRSITMLSLGD++A+GLGQRT Sbjct: 203 AGGTAGIKWVHLKIMLPWIAAAILGAIALSRSITMLSLGDDIAKGLGQRTGLVKLGGTVI 262 Query: 181 XXXXXXXXXXXXXXXXFIGLIIPHLTRYLVGVDYRWIFPCSXXXXXXXXXXXXXXXXXXI 240 F+GL+IPHLTR LVGVDYR I PCS Sbjct: 263 VLVLAGAAVSVVGAVGFVGLMIPHLTRKLVGVDYRLIIPCSAVLGSLLVVIADLAARMVN 322 Query: 241 PQHETPLGAVLALIGVPFFLYLARKERREL 270 P +ETP+G+++ALIGVPFFLYLARKERREL Sbjct: 323 PPYETPVGSIIALIGVPFFLYLARKERREL 352 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.146 0.456 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,068,565,293 Number of extensions: 27676801 Number of successful extensions: 87156 Number of sequences better than 1.0e-05: 2840 Number of HSP's gapped: 82377 Number of HSP's successfully gapped: 2924 Length of query: 270 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 137 Effective length of database: 1,807,701,208 Effective search space: 247655065496 Effective search space used: 247655065496 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 130 (54.7 bits)