BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0053.0008.p (316 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B0K6D8.1 B0K6D8_THEPX Binding-protein-dependent transport system... 409 e-112 B0K7P1.1 B0K7P1_THEP3 Binding-protein-dependent transport system... 406 e-111 B5YAX0.1 B5YAX0_DICT6 Multiple sugar-binding transport system pe... 385 e-105 B8DZA6.1 B8DZA6_DICTD Binding-protein-dependent transport system... 350 9e-95 C0BYE5.1 C0BYE5_9CLOT Putative uncharacterized protein 330 1e-88 >B0K6D8.1 B0K6D8_THEPX Binding-protein-dependent transport systems inner membrane component Length = 296 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 192/290 (66%), Positives = 235/290 (81%) Query: 26 EKGFWNRLRLRLLFTGPTLFAFLTVMIIPFVYGIYLTFTSWDGISVGHTLVGFRNYGSVF 85 EK +L+ L+F GPT FAFLTV+I+PF+YGIYLTFT W+GIS H VGF NY VF Sbjct: 6 EKTLLAKLKTYLIFAGPTTFAFLTVIILPFLYGIYLTFTDWNGISATHAFVGFSNYLQVF 65 Query: 86 ADSEFWSSFGLTLKYVLFTVVLTNVLAFMLAYALTKRVRGQNVFRAGFFMPNLVGGIVLG 145 D FW+SF LTLKYV FTV+L NV+AF LAY LT V+GQN FRAGFF PNL+GGI+LG Sbjct: 66 KDKVFWTSFLLTLKYVFFTVILINVIAFFLAYMLTSGVKGQNFFRAGFFTPNLIGGILLG 125 Query: 146 FIWQFIFNNVLVYLGQKASIGIFSASWLAEPGKAFWTLVIVTVWQYAGYMMVIYVAGLTG 205 FIWQFIF+N+LVYLG+ +I I S SWL++P KAFW LVIVTVWQY GYMMVIY++G Sbjct: 126 FIWQFIFSNILVYLGKSYNIPILSGSWLSDPDKAFWALVIVTVWQYTGYMMVIYISGFMN 185 Query: 206 VPADIQEAASIDGANSWQKLTRMTIPMMVPSFIVCLFLSLQRGFMVYDLNLTLTKGGPFG 265 +P D+ EAASIDGAN++Q+L + +P+MVPSF + +FL+LQRGFMVYD+NL LT GGP+ Sbjct: 186 IPRDLLEAASIDGANTYQRLKNVILPLMVPSFTISVFLTLQRGFMVYDINLALTNGGPYK 245 Query: 266 STQLVSMHVYQKAFLSRDYGVGQAEAFVLFLLVAVITLLQVYFSKKMEVE 315 ST+L+S+H+Y AFLS+ YG+GQAEAF LF +VA +TLLQVYFSKK+EVE Sbjct: 246 STELISLHIYNTAFLSQQYGIGQAEAFFLFFVVAAVTLLQVYFSKKLEVE 295 >B0K7P1.1 B0K7P1_THEP3 Binding-protein-dependent transport systems inner membrane component Length = 296 Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust. Identities = 191/290 (65%), Positives = 233/290 (80%) Query: 26 EKGFWNRLRLRLLFTGPTLFAFLTVMIIPFVYGIYLTFTSWDGISVGHTLVGFRNYGSVF 85 EK +L+ L+F GPT FAFLTV+I+PF+YGIYLTFT W+GIS H VGF NY F Sbjct: 6 EKTLLAKLKTYLIFAGPTTFAFLTVIILPFLYGIYLTFTDWNGISATHAFVGFSNYLQAF 65 Query: 86 ADSEFWSSFGLTLKYVLFTVVLTNVLAFMLAYALTKRVRGQNVFRAGFFMPNLVGGIVLG 145 D FW+SF LTLKYV FTV+L NV+AF LAY LT V+GQN FRAGFF PNL+GGI+LG Sbjct: 66 NDKVFWTSFLLTLKYVFFTVILINVIAFFLAYMLTSGVKGQNFFRAGFFTPNLIGGILLG 125 Query: 146 FIWQFIFNNVLVYLGQKASIGIFSASWLAEPGKAFWTLVIVTVWQYAGYMMVIYVAGLTG 205 FIWQFIF+N+LVYLG+ +I IFS SWL++P KAFW LVIVTVWQY GYMMVIY++G Sbjct: 126 FIWQFIFSNILVYLGKSYNIPIFSGSWLSDPDKAFWALVIVTVWQYTGYMMVIYISGFMN 185 Query: 206 VPADIQEAASIDGANSWQKLTRMTIPMMVPSFIVCLFLSLQRGFMVYDLNLTLTKGGPFG 265 +P D+ EAASIDGAN +Q+L + +P+M PSF + +FL+LQRGFMVYD+NL LT GGP+ Sbjct: 186 IPRDLLEAASIDGANFYQRLKNVILPLMAPSFTISVFLTLQRGFMVYDINLALTNGGPYK 245 Query: 266 STQLVSMHVYQKAFLSRDYGVGQAEAFVLFLLVAVITLLQVYFSKKMEVE 315 ST+L+S+H+Y AFLS+ YG+GQAEAF LF +VA +TLLQVYFSKK+EVE Sbjct: 246 STELISLHIYNTAFLSQQYGIGQAEAFFLFFVVAAVTLLQVYFSKKLEVE 295 >B5YAX0.1 B5YAX0_DICT6 Multiple sugar-binding transport system permease Length = 291 Score = 385 bits (988), Expect = e-105, Method: Compositional matrix adjust. Identities = 179/289 (61%), Positives = 232/289 (80%) Query: 27 KGFWNRLRLRLLFTGPTLFAFLTVMIIPFVYGIYLTFTSWDGISVGHTLVGFRNYGSVFA 86 ++++ +L ++F G ++ AFLTV+I+PF+YGIYLTFT+WDGI + +GF NY + Sbjct: 2 SSYFSKTKLFVVFCGISIIAFLTVVIVPFIYGIYLTFTNWDGIHKKYEFIGFSNYIGLLK 61 Query: 87 DSEFWSSFGLTLKYVLFTVVLTNVLAFMLAYALTKRVRGQNVFRAGFFMPNLVGGIVLGF 146 D F +SF LTLKYV FTV+ TN++AF+LAY LT ++GQ++FR FF PNL+GGI+LGF Sbjct: 62 DQVFKNSFLLTLKYVFFTVIFTNLIAFLLAYLLTSGIKGQSIFRVIFFTPNLIGGIILGF 121 Query: 147 IWQFIFNNVLVYLGQKASIGIFSASWLAEPGKAFWTLVIVTVWQYAGYMMVIYVAGLTGV 206 IWQFIF+N L YLG+ I + S SWLA P KAFW LV+VTVWQY+GYMM+IY+AGL + Sbjct: 122 IWQFIFHNALPYLGRHLGISLISESWLATPEKAFWALVLVTVWQYSGYMMMIYIAGLVSI 181 Query: 207 PADIQEAASIDGANSWQKLTRMTIPMMVPSFIVCLFLSLQRGFMVYDLNLTLTKGGPFGS 266 P D+ EAA IDGAN ++ LT++ +P+M PSF VCLFLSLQR FMVYDLNL LTKGGPF S Sbjct: 182 PQDLIEAAIIDGANKFKVLTKIIMPLMAPSFTVCLFLSLQRSFMVYDLNLALTKGGPFKS 241 Query: 267 TQLVSMHVYQKAFLSRDYGVGQAEAFVLFLLVAVITLLQVYFSKKMEVE 315 T+L+SMH+Y +AFLS++YG+GQA+AFVLF+ VA+ITL+QVY SKK EVE Sbjct: 242 TELISMHIYNEAFLSQNYGIGQAKAFVLFITVAIITLIQVYLSKKAEVE 290 >B8DZA6.1 B8DZA6_DICTD Binding-protein-dependent transport systems inner membrane component Length = 297 Score = 350 bits (898), Expect = 9e-95, Method: Compositional matrix adjust. Identities = 171/297 (57%), Positives = 215/297 (72%), Gaps = 5/297 (1%) Query: 23 MTGEKGFWNRLRLRLLFTGPTLFAFLTVMIIPFVYGIYLTFTSWDGISVGH----TLVGF 78 M K N LR ++F G AFLTV+I+PF+YG+YLTFT ++ + + VG Sbjct: 1 MIKPKNIRN-LRTYIIFAGIPTLAFLTVVILPFIYGVYLTFTDFNAVETVNQFLSKFVGL 59 Query: 79 RNYGSVFADSEFWSSFGLTLKYVLFTVVLTNVLAFMLAYALTKRVRGQNVFRAGFFMPNL 138 NY +DS F SF T KYV +T+V TN++AF LAY LT ++GQN FR FF PNL Sbjct: 60 SNYVKAISDSAFRESFLKTFKYVFYTMVFTNLIAFFLAYILTSGIKGQNFFRVAFFTPNL 119 Query: 139 VGGIVLGFIWQFIFNNVLVYLGQKASIGIFSASWLAEPGKAFWTLVIVTVWQYAGYMMVI 198 +GGI+LGFIWQFIFN+ Y+G K +I +F SWLA P KAFW LV VTVWQY GYMM+I Sbjct: 120 IGGIILGFIWQFIFNSAFPYIGYKLNIPLFYDSWLATPQKAFWALVTVTVWQYVGYMMMI 179 Query: 199 YVAGLTGVPADIQEAASIDGANSWQKLTRMTIPMMVPSFIVCLFLSLQRGFMVYDLNLTL 258 Y+AG +P D+ EAA+IDGA W KL R+ +P+MVPSF V +FL+LQR FMVYDLNL L Sbjct: 180 YIAGFVSIPQDLLEAATIDGAGKWHKLVRIILPLMVPSFTVTIFLTLQRSFMVYDLNLAL 239 Query: 259 TKGGPFGSTQLVSMHVYQKAFLSRDYGVGQAEAFVLFLLVAVITLLQVYFSKKMEVE 315 T+GGPF ST+LVSMHVY +AFL + Y +GQA+A +LF+ VA+IT++QVYFSKK EVE Sbjct: 240 TRGGPFKSTELVSMHVYNEAFLYQRYAIGQAKALILFITVALITMIQVYFSKKAEVE 296 >C0BYE5.1 C0BYE5_9CLOT Putative uncharacterized protein Length = 290 Score = 330 bits (846), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 158/279 (56%), Positives = 213/279 (76%) Query: 38 LFTGPTLFAFLTVMIIPFVYGIYLTFTSWDGISVGHTLVGFRNYGSVFADSEFWSSFGLT 97 +F P +F F V+IIPFVYGIYLT T W+G++ VGF+N+ V D +FW+S LT Sbjct: 12 MFALPGMFCFFAVVIIPFVYGIYLTLTDWNGVAEIKNFVGFKNFQGVVKDEQFWTSLLLT 71 Query: 98 LKYVLFTVVLTNVLAFMLAYALTKRVRGQNVFRAGFFMPNLVGGIVLGFIWQFIFNNVLV 157 KYV+ VVL NV+AF+LAY LT+ ++GQN FRAGFF PNL+GGIVLG+IWQF+F+ V V Sbjct: 72 FKYVILVVVLVNVIAFLLAYLLTRGIKGQNFFRAGFFTPNLIGGIVLGYIWQFVFSRVFV 131 Query: 158 YLGQKASIGIFSASWLAEPGKAFWTLVIVTVWQYAGYMMVIYVAGLTGVPADIQEAASID 217 +G+ + +F SWL++P KAF LV+V+VWQ +GYM++IYVAG G+ D+ EAASID Sbjct: 132 NIGESTNWELFGVSWLSDPTKAFIALVVVSVWQLSGYMILIYVAGFMGLSEDVMEAASID 191 Query: 218 GANSWQKLTRMTIPMMVPSFIVCLFLSLQRGFMVYDLNLTLTKGGPFGSTQLVSMHVYQK 277 GA W+K+ + +P+M+ S +CLFL+L R FMVYD+NL+LT G P+G+T++ +MHVY+K Sbjct: 192 GATGWKKMKSIVMPLMMSSITICLFLTLSRAFMVYDVNLSLTAGAPYGTTEMAAMHVYEK 251 Query: 278 AFLSRDYGVGQAEAFVLFLLVAVITLLQVYFSKKMEVEA 316 AF SR +GVGQAEA +LF++VA I+ LQVY +KK EVEA Sbjct: 252 AFTSRQFGVGQAEALILFVIVACISGLQVYLTKKKEVEA 290 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.142 0.443 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,882,134,137 Number of extensions: 78553518 Number of successful extensions: 300118 Number of sequences better than 1.0e-05: 6292 Number of HSP's gapped: 291550 Number of HSP's successfully gapped: 6308 Length of query: 316 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 181 Effective length of database: 1,788,859,178 Effective search space: 323783511218 Effective search space used: 323783511218 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 131 (55.1 bits)