BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0053.0007.p (275 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B0K7P2.1 B0K7P2_THEP3 Binding-protein-dependent transport system... 321 4e-86 B0K6D9.1 B0K6D9_THEPX Binding-protein-dependent transport system... 320 1e-85 B5YAX1.1 B5YAX1_DICT6 Multiple sugar-binding transport system pe... 285 2e-75 B8DZA7.1 B8DZA7_DICTD Binding-protein-dependent transport system... 277 8e-73 C0BYE4.1 C0BYE4_9CLOT Putative uncharacterized protein 254 8e-66 >B0K7P2.1 B0K7P2_THEP3 Binding-protein-dependent transport systems inner membrane component Length = 275 Score = 321 bits (823), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 155/240 (64%), Positives = 190/240 (79%) Query: 36 KENAMITSNPLALPTSFKFANYSYAFKQMNYVDAFTNTIIITALSVILIGICGAMTAHYF 95 KE I NPL LP+ +NY AF +MNY+ AF N++IITA SV LI + +MTA+ F Sbjct: 36 KERKEILENPLKLPSVLNLSNYIDAFTKMNYMHAFLNSLIITAFSVFLITLLSSMTAYIF 95 Query: 96 VRNPSRLNQNTFLFMVASMIIPFQAIMIPLVKIYGSLDMLNSKTSLIFMYLGFGSSLAVF 155 VR + NQ F FMVASMIIPFQ IMIPLVKIYGS+ M+NSK +LI+MY+GFG+SLAVF Sbjct: 96 VRKKWKFNQFMFFFMVASMIIPFQGIMIPLVKIYGSIGMMNSKWALIYMYVGFGASLAVF 155 Query: 156 IYHGFIKSIPKELEEAAMIDGCSRIRMFFQIVFPVLVPTTVTIGILNVLWIWNDFLLPSL 215 +YHGFIKSIP ELEEAA IDGCS+++ FF+IVFP+L P T TI IL++LWIWNDFLLP L Sbjct: 156 MYHGFIKSIPLELEEAATIDGCSQLQTFFKIVFPLLKPVTTTIAILDILWIWNDFLLPYL 215 Query: 216 VLVEAGQRTLPLSTYSFYGTYTVDYGPLMASLMLTILPVVIVYLFAQKYIIQGVMQGSVK 275 VL+ QRTLPLS + FYGTYT++YGP MA+LML +PV+IVYL QK II+GV++GS+K Sbjct: 216 VLMAPEQRTLPLSVFYFYGTYTIEYGPAMAALMLATIPVIIVYLLMQKQIIEGVLKGSIK 275 >B0K6D9.1 B0K6D9_THEPX Binding-protein-dependent transport systems inner membrane component Length = 275 Score = 320 bits (819), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 154/240 (64%), Positives = 189/240 (78%) Query: 36 KENAMITSNPLALPTSFKFANYSYAFKQMNYVDAFTNTIIITALSVILIGICGAMTAHYF 95 KE I NPL LP+ +NY AF +MNY+ AF N++IITA SV LI + +MTA+ F Sbjct: 36 KERKEILENPLKLPSVLNLSNYIDAFTKMNYLHAFLNSLIITAFSVFLITLLSSMTAYIF 95 Query: 96 VRNPSRLNQNTFLFMVASMIIPFQAIMIPLVKIYGSLDMLNSKTSLIFMYLGFGSSLAVF 155 VR + NQ F FMVASMIIPFQ IMIPLVKIYGS+ M+NSK +LI+MY+GFG+SLAVF Sbjct: 96 VRKKWKFNQFMFFFMVASMIIPFQGIMIPLVKIYGSIGMMNSKWALIYMYVGFGASLAVF 155 Query: 156 IYHGFIKSIPKELEEAAMIDGCSRIRMFFQIVFPVLVPTTVTIGILNVLWIWNDFLLPSL 215 +YHGFIKSIP ELEEAA IDGCS+++ FF+IVFP+L P T TI IL++LWIWNDFLLP L Sbjct: 156 MYHGFIKSIPLELEEAATIDGCSQLQTFFKIVFPLLKPVTTTIAILDILWIWNDFLLPYL 215 Query: 216 VLVEAGQRTLPLSTYSFYGTYTVDYGPLMASLMLTILPVVIVYLFAQKYIIQGVMQGSVK 275 VL+ QRTLPLS + FYGTYT++YGP MA+LML +PV+I YL QK II+GV++GS+K Sbjct: 216 VLMAPEQRTLPLSVFYFYGTYTIEYGPAMAALMLATIPVIIAYLLMQKQIIEGVLKGSIK 275 >B5YAX1.1 B5YAX1_DICT6 Multiple sugar-binding transport system permease Length = 278 Score = 285 bits (730), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 136/240 (56%), Positives = 184/240 (76%) Query: 36 KENAMITSNPLALPTSFKFANYSYAFKQMNYVDAFTNTIIITALSVILIGICGAMTAHYF 95 K+ + NPLALP FK +NY A ++MNY +F NT +IT S+ +I I +MTA+ F Sbjct: 39 KKTGEVVLNPLALPKEFKISNYFEAAERMNYFRSFFNTFVITVASIAIIVIFSSMTAYIF 98 Query: 96 VRNPSRLNQNTFLFMVASMIIPFQAIMIPLVKIYGSLDMLNSKTSLIFMYLGFGSSLAVF 155 R +N+ F M ASMIIPFQ++MIPLVKIYGSL+MLN+ SLI+MYLGFG++ AVF Sbjct: 99 ARKKWSINKIFFSIMAASMIIPFQSVMIPLVKIYGSLNMLNNMWSLIYMYLGFGTAFAVF 158 Query: 156 IYHGFIKSIPKELEEAAMIDGCSRIRMFFQIVFPVLVPTTVTIGILNVLWIWNDFLLPSL 215 +YHGFIKSIP ELEEAA++DG + + F++IVFP+L P T T+ IL+ LWIWNDFLLPSL Sbjct: 159 LYHGFIKSIPLELEEAALVDGATTFQAFWKIVFPLLKPVTTTLIILDALWIWNDFLLPSL 218 Query: 216 VLVEAGQRTLPLSTYSFYGTYTVDYGPLMASLMLTILPVVIVYLFAQKYIIQGVMQGSVK 275 +L+ A +RTL LST+ FYGT+T +YG MA+L+LT+ P+++V LF QKYII G+++G+++ Sbjct: 219 ILISAEKRTLQLSTFYFYGTFTSNYGLAMAALVLTVFPIIVVSLFMQKYIIAGIVRGAIR 278 >B8DZA7.1 B8DZA7_DICTD Binding-protein-dependent transport systems inner membrane component Length = 275 Score = 277 bits (708), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 146/240 (60%), Positives = 185/240 (77%) Query: 36 KENAMITSNPLALPTSFKFANYSYAFKQMNYVDAFTNTIIITALSVILIGICGAMTAHYF 95 K+ + I NP LP SF FANY A +M Y +AF NT+IIT+ S+ LI I +M A+ F Sbjct: 36 KQTSEIILNPFKLPESFSFANYLSAAIKMKYWNAFLNTLIITSFSITLIVIFSSMAAYIF 95 Query: 96 VRNPSRLNQNTFLFMVASMIIPFQAIMIPLVKIYGSLDMLNSKTSLIFMYLGFGSSLAVF 155 VR +N+ F M+ASMIIPFQ+IMIPLVKIYGSL++LN+K +LI+MYLGFG+S AVF Sbjct: 96 VRKNWSINKIVFSMMIASMIIPFQSIMIPLVKIYGSLNLLNNKWTLIYMYLGFGTSFAVF 155 Query: 156 IYHGFIKSIPKELEEAAMIDGCSRIRMFFQIVFPVLVPTTVTIGILNVLWIWNDFLLPSL 215 +YHGFIK IP ELEEAA++DG S + F++IVFP+L P T TI IL+ LWIWNDFLLPSL Sbjct: 156 MYHGFIKGIPYELEEAALVDGASEFQTFWKIVFPLLKPVTYTIVILDSLWIWNDFLLPSL 215 Query: 216 VLVEAGQRTLPLSTYSFYGTYTVDYGPLMASLMLTILPVVIVYLFAQKYIIQGVMQGSVK 275 VL+ A +RTL LST+ FYGTY DYG MA+LML I+P++I+YL QKYII G+M+G++K Sbjct: 216 VLISAEKRTLQLSTFYFYGTYNTDYGLAMAALMLAIIPIIIIYLLLQKYIIAGIMKGAIK 275 >C0BYE4.1 C0BYE4_9CLOT Putative uncharacterized protein Length = 286 Score = 254 bits (648), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 132/245 (53%), Positives = 179/245 (73%), Gaps = 5/245 (2%) Query: 36 KENAMITSNPLALPTSFK---FANYSYAFKQMNYVDAFTNTIIITALSVILIGICGAMTA 92 KE I +P + + K F N+ AF QM++++AF N++I+T + +L+ + AM A Sbjct: 42 KEKRDIIKSPFSWLFTIKGLSFDNFEKAFTQMDFLNAFKNSLIVTVSATLLVTLFAAMLA 101 Query: 93 HYFVRNPSRLNQNTFLFMVASMIIPFQAIMIPLVKIYG-SLDMLNSKTSLIFMYLGFGSS 151 +Y VR+ + +++ TF MVASMIIPFQAIMIPLV IYG +L+MLN + +LIFM+ GF + Sbjct: 102 YYIVRHNNAVSKITFALMVASMIIPFQAIMIPLVSIYGGALNMLNHRLTLIFMHTGFSMA 161 Query: 152 LAVFIYHGFIK-SIPKELEEAAMIDGCSRIRMFFQIVFPVLVPTTVTIGILNVLWIWNDF 210 ++VF++HGFIK SIP LEEAA IDGC+R + FF+IVFP+L P T+ ILN L WNDF Sbjct: 162 MSVFMFHGFIKGSIPIALEEAAYIDGCTRSQTFFKIVFPLLKPIISTMIILNSLAFWNDF 221 Query: 211 LLPSLVLVEAGQRTLPLSTYSFYGTYTVDYGPLMASLMLTILPVVIVYLFAQKYIIQGVM 270 LLPSLVL + TLPLSTYSFYGTY+ DYG +MA L+L ++P+VI+Y+ QK II GV+ Sbjct: 222 LLPSLVLSDKKLLTLPLSTYSFYGTYSADYGTIMAGLLLCVIPIVILYVLLQKQIIGGVV 281 Query: 271 QGSVK 275 G+VK Sbjct: 282 AGAVK 286 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.141 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,361,131,916 Number of extensions: 52196937 Number of successful extensions: 203546 Number of sequences better than 1.0e-05: 6118 Number of HSP's gapped: 198344 Number of HSP's successfully gapped: 6125 Length of query: 275 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 141 Effective length of database: 1,798,280,193 Effective search space: 253557507213 Effective search space used: 253557507213 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)