BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0053.0002.p (229 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q0ST44.1 Q0ST44_CLOPS Exonuclease family protein 152 3e-35 B1RPM8.1 B1RPM8_CLOPE Exonuclease family protein 152 3e-35 B1RKI9.1 B1RKI9_CLOPE Exonuclease family protein 152 3e-35 Q0TQJ4.1 Q0TQJ4_CLOP1 Exonuclease family protein 151 3e-35 B1R6Q0.1 B1R6Q0_CLOPE Exonuclease family protein 151 3e-35 >Q0ST44.1 Q0ST44_CLOPS Exonuclease family protein Length = 302 Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 70/144 (48%), Positives = 94/144 (65%), Gaps = 1/144 (0%) Query: 1 MNFTAIDFETANSSRSSACALGLVQVREGVVSAEHVWLIDP-QQRFDGMNIAIHGITPSM 59 M+F AIDFETAN R+SAC++GL V++ + E +LI P + RF MNI IHGI P Sbjct: 1 MDFVAIDFETANEKRNSACSIGLTVVKDNKIVEEKYFLIKPCEMRFQPMNIWIHGIRPED 60 Query: 60 VEGKPTFDELWPTLEPLLQGEVVIAHNAAFDMSVLRYCLDRTAYSYPEFQYMCTYLLGKK 119 VE + TF+E+W ++ + G +VIAHNAAFD+SVLR LD YP+F+Y CT ++ K Sbjct: 61 VENERTFNEIWKEIKDYIDGNLVIAHNAAFDISVLRKTLDFYDIPYPDFEYACTVVMAKN 120 Query: 120 MLQELPSHKLNVVSQHFGISLKHH 143 + LP+HKL VS+ G HH Sbjct: 121 YYKSLPNHKLGTVSEALGFEFSHH 144 >B1RPM8.1 B1RPM8_CLOPE Exonuclease family protein Length = 302 Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 70/144 (48%), Positives = 94/144 (65%), Gaps = 1/144 (0%) Query: 1 MNFTAIDFETANSSRSSACALGLVQVREGVVSAEHVWLIDP-QQRFDGMNIAIHGITPSM 59 M+F AIDFETAN R+SAC++GL V++ + E +LI P + RF MNI IHGI P Sbjct: 1 MDFVAIDFETANEKRNSACSIGLTVVKDNKIVEEKYFLIKPCEMRFQPMNIWIHGIRPED 60 Query: 60 VEGKPTFDELWPTLEPLLQGEVVIAHNAAFDMSVLRYCLDRTAYSYPEFQYMCTYLLGKK 119 VE + TF+E+W ++ + G +VIAHNAAFD+SVLR LD YP+F+Y CT ++ K Sbjct: 61 VENERTFNEIWEEIKDYIDGNLVIAHNAAFDISVLRKTLDFYDIPYPDFEYACTVVMAKN 120 Query: 120 MLQELPSHKLNVVSQHFGISLKHH 143 + LP+HKL VS+ G HH Sbjct: 121 YYKSLPNHKLGTVSEALGFEFSHH 144 >B1RKI9.1 B1RKI9_CLOPE Exonuclease family protein Length = 302 Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 70/144 (48%), Positives = 94/144 (65%), Gaps = 1/144 (0%) Query: 1 MNFTAIDFETANSSRSSACALGLVQVREGVVSAEHVWLIDP-QQRFDGMNIAIHGITPSM 59 M+F AIDFETAN R+SAC++GL V++ + E +LI P + RF MNI IHGI P Sbjct: 1 MDFVAIDFETANEKRNSACSIGLTVVKDNKIVEEKYFLIKPCEMRFQPMNIWIHGIRPED 60 Query: 60 VEGKPTFDELWPTLEPLLQGEVVIAHNAAFDMSVLRYCLDRTAYSYPEFQYMCTYLLGKK 119 VE + TF+E+W ++ + G +VIAHNAAFD+SVLR LD YP+F+Y CT ++ K Sbjct: 61 VENERTFNEIWEEIKDYIDGNLVIAHNAAFDISVLRKTLDFYDIPYPDFEYACTVVMAKN 120 Query: 120 MLQELPSHKLNVVSQHFGISLKHH 143 + LP+HKL VS+ G HH Sbjct: 121 YYKSLPNHKLGTVSEALGFEFSHH 144 >Q0TQJ4.1 Q0TQJ4_CLOP1 Exonuclease family protein Length = 302 Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 70/144 (48%), Positives = 94/144 (65%), Gaps = 1/144 (0%) Query: 1 MNFTAIDFETANSSRSSACALGLVQVREGVVSAEHVWLIDP-QQRFDGMNIAIHGITPSM 59 M+F AIDFETAN R+SAC++GL V++ + E +LI P + RF MNI IHGI P Sbjct: 1 MDFVAIDFETANEKRNSACSIGLTVVKDNKIVEEKYFLIKPCEMRFQPMNIWIHGIRPED 60 Query: 60 VEGKPTFDELWPTLEPLLQGEVVIAHNAAFDMSVLRYCLDRTAYSYPEFQYMCTYLLGKK 119 VE + TF+E+W ++ + G +VIAHNAAFD+SVLR LD YP+F+Y CT ++ K Sbjct: 61 VENERTFNEIWEEIKDYIDGNLVIAHNAAFDISVLRKTLDFYDIPYPDFEYACTVVMAKN 120 Query: 120 MLQELPSHKLNVVSQHFGISLKHH 143 + LP+HKL VS+ G HH Sbjct: 121 YYKSLPNHKLGTVSEALGFEFSHH 144 >B1R6Q0.1 B1R6Q0_CLOPE Exonuclease family protein Length = 302 Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 70/144 (48%), Positives = 94/144 (65%), Gaps = 1/144 (0%) Query: 1 MNFTAIDFETANSSRSSACALGLVQVREGVVSAEHVWLIDP-QQRFDGMNIAIHGITPSM 59 M+F AIDFETAN R+SAC++GL V++ + E +LI P + RF MNI IHGI P Sbjct: 1 MDFVAIDFETANEKRNSACSIGLTVVKDNKIVEEKYFLIKPCEMRFQPMNIWIHGIRPED 60 Query: 60 VEGKPTFDELWPTLEPLLQGEVVIAHNAAFDMSVLRYCLDRTAYSYPEFQYMCTYLLGKK 119 VE + TF+E+W ++ + G +VIAHNAAFD+SVLR LD YP+F+Y CT ++ K Sbjct: 61 VENERTFNEIWEEIKDYIDGNLVIAHNAAFDISVLRKTLDFYDIPYPDFEYACTVVMAKN 120 Query: 120 MLQELPSHKLNVVSQHFGISLKHH 143 + LP+HKL VS+ G HH Sbjct: 121 YYKSLPNHKLGTVSEALGFEFSHH 144 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.135 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,063,836,235 Number of extensions: 36462568 Number of successful extensions: 67849 Number of sequences better than 1.0e-05: 803 Number of HSP's gapped: 67849 Number of HSP's successfully gapped: 803 Length of query: 229 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 98 Effective length of database: 1,826,543,238 Effective search space: 179001237324 Effective search space used: 179001237324 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)