BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0050.0004.p (291 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B8I904.1 B8I904_CLOCE Putative phage major capsid protein 327 1e-87 B8I124.1 B8I124_CLOCE Putative phage major capsid protein 323 8e-87 C2KWG6.1 C2KWG6_9FIRM Phage major capsid protein 311 5e-83 Q0TSI7.1 Q0TSI7_CLOP1 Putative phage major capsid protein 310 1e-82 B1RBB1.1 B1RBB1_CLOPE Putative phage major capsid protein 307 8e-82 >B8I904.1 B8I904_CLOCE Putative phage major capsid protein Length = 301 Score = 327 bits (837), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 167/296 (56%), Positives = 211/296 (71%), Gaps = 8/296 (2%) Query: 1 MP-YNYVDSFLTVLQQKYTKELTSSGLTTQNA--IFVNAKTIKIPRLDVAGYKNHSRAG- 56 MP Y+Y + F LQQKY +ELTS LT N F+NA+TIK+PRL ++GYK+H+R G Sbjct: 1 MPVYSYAEQFEGQLQQKYARELTSYALTQSNQGIKFINAQTIKLPRLTLSGYKDHNRGGM 60 Query: 57 GWNRQAVSNDFELKVLTFDRDVEFYVDAMDVDETNQIVSAANLTNVFETEQAIPELDKYR 116 G+N ++SND+E K L DRDVEF +D MD+DETN ++ AN+ NVFETEQAIPE D YR Sbjct: 61 GFNTGSISNDWEPKKLEHDRDVEFAIDPMDIDETNLVIEMANIQNVFETEQAIPEKDSYR 120 Query: 117 YSKIYAD---YVALGKTPDTTVITAANALQVFDQLMENMDEAEIPLEGRILYVTPAIYKL 173 YSK+YA+ Y A G D T +T +N L FD ME MD+ +P EGRILYVTPA+ KL Sbjct: 121 YSKLYAEAKTYAADGAVIDNTTLTVSNVLDWFDTQMEKMDDEGVPSEGRILYVTPAMNKL 180 Query: 174 LKQAEDVQRFISVQSNNGTVDRSVRKLDDVTLVQVPSSRMKTIYDFTNGAVPGVGAKQIN 233 LK A + R I V SNNG +DR V LDDVT+V+VPS+R+KT YDFTNG VP V AKQIN Sbjct: 181 LKNASGLTRNIDVNSNNGNIDRRVYSLDDVTIVKVPSARLKTKYDFTNGCVPSVDAKQIN 240 Query: 234 MILIHPSCVLAPIKHTAIYLWEPGSHT-GGDGFLYQNRRYTDLFLIERKAAAIQIN 288 MILIHPSCV++ K+ + ++ PG+ + D ++YQNR YTD FLI+ KA + IN Sbjct: 241 MILIHPSCVVSRDKYAYMKVFTPGTDSRTADKYVYQNRYYTDTFLIQNKACGVAIN 296 >B8I124.1 B8I124_CLOCE Putative phage major capsid protein Length = 301 Score = 323 bits (829), Expect = 8e-87, Method: Compositional matrix adjust. Identities = 166/296 (56%), Positives = 209/296 (70%), Gaps = 8/296 (2%) Query: 1 MP-YNYVDSFLTVLQQKYTKELTSSGLTTQNA--IFVNAKTIKIPRLDVAGYKNHSRAG- 56 MP Y+Y + F LQQKY +ELTS LT N F+NA+TIK+PRL ++GYK+H+R G Sbjct: 1 MPVYSYAEQFDGQLQQKYARELTSYALTQSNQGIKFINAQTIKLPRLTLSGYKDHNRGGM 60 Query: 57 GWNRQAVSNDFELKVLTFDRDVEFYVDAMDVDETNQIVSAANLTNVFETEQAIPELDKYR 116 G+N ++SND+E K L DRDVEF +D MD+DET ++ AN+ NVFETEQAIPE D YR Sbjct: 61 GFNTGSISNDWEPKKLEHDRDVEFAIDPMDIDETKLVIEMANIQNVFETEQAIPEKDSYR 120 Query: 117 YSKIYAD---YVALGKTPDTTVITAANALQVFDQLMENMDEAEIPLEGRILYVTPAIYKL 173 YSK+YA+ Y A G D T +T +N L FD ME MD+ +P EGRILYVTPAI KL Sbjct: 121 YSKLYAEAKTYAADGAVIDNTALTVSNVLDWFDTQMEKMDDEGVPSEGRILYVTPAINKL 180 Query: 174 LKQAEDVQRFISVQSNNGTVDRSVRKLDDVTLVQVPSSRMKTIYDFTNGAVPGVGAKQIN 233 LK A + R I V SNNG +DR V LDDVT+V+VPS+R+KT YDFTNG VP AKQIN Sbjct: 181 LKNASGLTRNIDVNSNNGNIDRRVYSLDDVTIVKVPSARLKTKYDFTNGCVPAADAKQIN 240 Query: 234 MILIHPSCVLAPIKHTAIYLWEPGSHT-GGDGFLYQNRRYTDLFLIERKAAAIQIN 288 MILIHPSCV++ K+ + ++ PG+ + D ++YQNR YTD FLI+ KA + IN Sbjct: 241 MILIHPSCVVSRDKYAYMKVFTPGTDSRTADKYVYQNRYYTDTFLIQNKACGVAIN 296 >C2KWG6.1 C2KWG6_9FIRM Phage major capsid protein Length = 296 Score = 311 bits (797), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 156/291 (53%), Positives = 203/291 (69%), Gaps = 5/291 (1%) Query: 3 YNYVDSFLTVLQQKYTKELTSSGLTTQNA--IFVNAKTIKIPRLDVAGYKNHSRAGGWNR 60 Y Y + F L QKY KEL S L N F+NA+TIK+PRL ++GYK+H+R G+N Sbjct: 4 YQYAEQFTQFLAQKYEKELCSDALMHSNPQITFLNAQTIKLPRLTLSGYKDHTRTAGFNA 63 Query: 61 QAVSNDFELKVLTFDRDVEFYVDAMDVDETNQIVSAANLTNVFETEQAIPELDKYRYSKI 120 +SND+E K L DRD+EF+VD MD+DETN +S AN+ NVFETEQAIPE D Y +SK+ Sbjct: 64 GTISNDWEPKKLAHDRDIEFFVDPMDIDETNLALSVANIQNVFETEQAIPEKDCYNFSKL 123 Query: 121 YADYVAL-GKTPDTTVITAANALQVFDQLMENMDEAEIPLEGRILYVTPAIYKLLKQAED 179 + + G+ TTV+TA N L VFD+ M MD+A +P++GRILYVTPA+ KLLK+A+ Sbjct: 124 HTELTTFHGRIDSTTVLTAQNILAVFDEEMSKMDDAGVPVDGRILYVTPAVNKLLKEADG 183 Query: 180 VQRFISVQSNNGTVDRSVRKLDDVTLVQVPSSRMKTIYDFTNGAVPGVGAKQINMILIHP 239 +QR I+V S+N V+RS+ LD+VT+ VPS RMKT Y+FTNG V A QIN IL+HP Sbjct: 184 IQRMITVNSSNA-VNRSIHGLDEVTVKMVPSGRMKTKYNFTNGCVVAADADQINFILVHP 242 Query: 240 SCVLAPIKHTAIYLWEPGSHT-GGDGFLYQNRRYTDLFLIERKAAAIQINV 289 SCV+A K+ I L+ PG+ + DG+LYQNR Y DLF+IERK A +V Sbjct: 243 SCVVARDKYAYISLFTPGTDSRTADGYLYQNRNYWDLFMIERKVAGCAAHV 293 >Q0TSI7.1 Q0TSI7_CLOP1 Putative phage major capsid protein Length = 301 Score = 310 bits (793), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 161/294 (54%), Positives = 203/294 (69%), Gaps = 7/294 (2%) Query: 3 YNYVDSFLTVLQQKYTKELTSSGLTTQN--AIFVNAKTIKIPRLDVAGYKNHSRAG-GWN 59 Y+Y + F LQQKY +ELTS L N F+NA+TIK+P + V+GYK+H+R+ G+N Sbjct: 4 YSYAEQFERQLQQKYARELTSYALEQSNPQVKFINAQTIKLPNITVSGYKDHNRSAMGFN 63 Query: 60 RQAVSNDFELKVLTFDRDVEFYVDAMDVDETNQIVSAANLTNVFETEQAIPELDKYRYSK 119 ++SND+E K L+ DRD+EF +D MDVDETN + AN+ NVFETEQAIPE D YRYSK Sbjct: 64 TGSMSNDWEPKKLSHDRDIEFAIDPMDVDETNLTLEMANIQNVFETEQAIPEKDSYRYSK 123 Query: 120 IYAD---YVALGKTPDTTVITAANALQVFDQLMENMDEAEIPLEGRILYVTPAIYKLLKQ 176 +YA+ Y A G D TV+T AN L FD ME MD+ +P EGRILYVTPAI KLLK Sbjct: 124 LYAEAKTYKANGAVIDNTVLTTANILDWFDTQMEKMDDLGVPSEGRILYVTPAINKLLKN 183 Query: 177 AEDVQRFISVQSNNGTVDRSVRKLDDVTLVQVPSSRMKTIYDFTNGAVPGVGAKQINMIL 236 AE + R I+ N G VDR V LDDVT+ +VPS+RMKT YDFTNG VP AKQIN+IL Sbjct: 184 AEGLTRTINSDKNTGKVDRRVYSLDDVTITKVPSARMKTKYDFTNGCVPAGDAKQINIIL 243 Query: 237 IHPSCVLAPIKHTAIYLWEPGSHT-GGDGFLYQNRRYTDLFLIERKAAAIQINV 289 IHPSC + K++ I ++ PG+ + D +++QNR Y D FLI+ KA I IN Sbjct: 244 IHPSCQVTRSKYSYIKVFTPGTDSRTADKYVFQNRSYGDTFLIKNKACGIAINA 297 >B1RBB1.1 B1RBB1_CLOPE Putative phage major capsid protein Length = 301 Score = 307 bits (786), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 156/294 (53%), Positives = 202/294 (68%), Gaps = 7/294 (2%) Query: 3 YNYVDSFLTVLQQKYTKELTSSGLTTQN--AIFVNAKTIKIPRLDVAGYKNHSRAG-GWN 59 Y+Y + F LQQKY +ELTS L N F+NA+TIK+P + V+GYK+H+R G+N Sbjct: 4 YSYAEQFERELQQKYARELTSYDLEQSNPQVKFINAQTIKLPNITVSGYKDHNRGNMGFN 63 Query: 60 RQAVSNDFELKVLTFDRDVEFYVDAMDVDETNQIVSAANLTNVFETEQAIPELDKYRYSK 119 +SN++E K L DRD+EF +D MD+DETN + AN+ N FETEQAIPE D YRYSK Sbjct: 64 TGTISNEWEPKKLAHDRDIEFALDPMDIDETNLTLEMANVQNTFETEQAIPERDSYRYSK 123 Query: 120 IYAD---YVALGKTPDTTVITAANALQVFDQLMENMDEAEIPLEGRILYVTPAIYKLLKQ 176 +YA+ Y + G D TV+T AN L FD+ ME MD+ +P EGRILYVTPA+ K++K Sbjct: 124 LYAEAKTYKSNGAVIDNTVLTTANVLDWFDEKMEKMDDEGVPSEGRILYVTPAMNKIIKN 183 Query: 177 AEDVQRFISVQSNNGTVDRSVRKLDDVTLVQVPSSRMKTIYDFTNGAVPGVGAKQINMIL 236 A+++QR + V SNNG VDR V LDDVT+ +VPS+RMKT YDFTNG VP AKQI+MIL Sbjct: 184 AQNIQRSLDVNSNNGNVDRRVYSLDDVTIKKVPSARMKTKYDFTNGCVPAGDAKQIHMIL 243 Query: 237 IHPSCVLAPIKHTAIYLWEPGSHT-GGDGFLYQNRRYTDLFLIERKAAAIQINV 289 IHPSC + K+ + L+ PG+ + D ++YQ R Y D FLI+ KA I IN Sbjct: 244 IHPSCQVTRRKYAYMKLFTPGTDSRTADNYVYQTREYGDTFLIKNKACGIAINA 297 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.134 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,647,386,071 Number of extensions: 65341833 Number of successful extensions: 156572 Number of sequences better than 1.0e-05: 56 Number of HSP's gapped: 156470 Number of HSP's successfully gapped: 56 Length of query: 291 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 157 Effective length of database: 1,798,280,193 Effective search space: 282329990301 Effective search space used: 282329990301 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)