BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0050.0003.p (198 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B8I125.1 B8I125_CLOCE Minor structural GP20 protein 160 8e-38 B8I905.1 B8I905_CLOCE Minor structural GP20 protein 160 8e-38 B1BWE4.1 B1BWE4_CLOPE Phage minor structural protein GP20 121 4e-26 B1RIY3.1 B1RIY3_CLOPE Phage minor structural protein GP20 119 2e-25 B4BCL5.1 B4BCL5_CLOTM Minor structural GP20 protein 96 2e-18 >B8I125.1 B8I125_CLOCE Minor structural GP20 protein Length = 193 Score = 160 bits (404), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 93/193 (48%), Positives = 124/193 (64%), Gaps = 7/193 (3%) Query: 1 MEWLKELLKKAGVEESKVD--GLIGDVNKELPKHFVPKSQYNELTDTKKKLEKDITDRDT 58 MEWLK+L++ A +++ K+D L+ +N E PK+ VPK YN L +TKK+LEKD++ RD Sbjct: 1 MEWLKKLIEAAQIKDGKLDVGALMAQINTEFPKNAVPKDTYNALAETKKQLEKDVSTRDK 60 Query: 59 QLEALSKDAGASETLKAEIARLQGENKTTKEKYEADLKDMTLNNAITAALNGKVHNEKVV 118 Q+E L K A L+AEI +LQ ENK +KY AD+KD+TL NAI A+NGKVH+E +V Sbjct: 61 QIEDLKKVDAAG--LQAEIEKLQQENKEAADKYAADMKDITLTNAIKMAINGKVHDEGIV 118 Query: 119 TGLIDKNKLVIGDDGKVVGLDEQLTTLKTSDAYLFKPDEPXXXXXXXXXXXXXXXXXXXX 178 +GL DK+KLV+ D KVVGLD+Q+ LK S A+LFK ++P Sbjct: 119 SGLFDKSKLVV-DGDKVVGLDDQIKGLKESKAFLFKEEDPSGSQKPGFKVGTDGSKGAGA 177 Query: 179 XXXTNEQLASIFG 191 T QLASIFG Sbjct: 178 DVDT--QLASIFG 188 >B8I905.1 B8I905_CLOCE Minor structural GP20 protein Length = 193 Score = 160 bits (404), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 93/193 (48%), Positives = 124/193 (64%), Gaps = 7/193 (3%) Query: 1 MEWLKELLKKAGVEESKVD--GLIGDVNKELPKHFVPKSQYNELTDTKKKLEKDITDRDT 58 MEWLK+L++ A +++ K+D L+ +N E PK+ VPK YN L +TKK+LEKD++ RD Sbjct: 1 MEWLKKLIEAAQIKDGKLDVEALMAQINTEFPKNAVPKDTYNALAETKKQLEKDVSTRDK 60 Query: 59 QLEALSKDAGASETLKAEIARLQGENKTTKEKYEADLKDMTLNNAITAALNGKVHNEKVV 118 Q+E L K A L+AEI +LQ ENK +KY AD+KD+TL NAI A+NGKVH+E +V Sbjct: 61 QIEDLKKVDAAG--LQAEIEKLQKENKEAADKYAADMKDITLTNAIKMAINGKVHDEGIV 118 Query: 119 TGLIDKNKLVIGDDGKVVGLDEQLTTLKTSDAYLFKPDEPXXXXXXXXXXXXXXXXXXXX 178 +GL DK+KLV+ D KVVGLD+Q+ LK S A+LFK ++P Sbjct: 119 SGLFDKSKLVV-DGDKVVGLDDQIKGLKESKAFLFKEEDPSGSQKPGFKVGTDGSKGAGA 177 Query: 179 XXXTNEQLASIFG 191 T QLASIFG Sbjct: 178 DVDT--QLASIFG 188 >B1BWE4.1 B1BWE4_CLOPE Phage minor structural protein GP20 Length = 202 Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 63/125 (50%), Positives = 88/125 (70%) Query: 33 FVPKSQYNELTDTKKKLEKDITDRDTQLEALSKDAGASETLKAEIARLQGENKTTKEKYE 92 +V KS+++E+ KK+LE DI DRDTQLE L K AG + LK +I LQ +NK E Y+ Sbjct: 34 YVEKSKFDEVKQAKKQLETDIKDRDTQLEDLKKSAGDNAALKQQIESLQADNKKKDEDYQ 93 Query: 93 ADLKDMTLNNAITAALNGKVHNEKVVTGLIDKNKLVIGDDGKVVGLDEQLTTLKTSDAYL 152 A+LKD+ L NAI A++ + +V+ LIDK+KL++ DDGKV GLDEQ+T LK + ++L Sbjct: 94 AELKDLKLTNAIKLAISDSAQDVDLVSSLIDKSKLILADDGKVTGLDEQVTGLKENKSFL 153 Query: 153 FKPDE 157 FK +E Sbjct: 154 FKAEE 158 >B1RIY3.1 B1RIY3_CLOPE Phage minor structural protein GP20 Length = 201 Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 61/123 (49%), Positives = 84/123 (68%) Query: 33 FVPKSQYNELTDTKKKLEKDITDRDTQLEALSKDAGASETLKAEIARLQGENKTTKEKYE 92 ++ KS+++E+ KK+LE DI DRDTQLE L K G + LK +I LQ +NK E Y+ Sbjct: 34 YIEKSKFDEVKQAKKQLETDIKDRDTQLETLKKSVGDNAALKQQIETLQADNKKKDEDYQ 93 Query: 93 ADLKDMTLNNAITAALNGKVHNEKVVTGLIDKNKLVIGDDGKVVGLDEQLTTLKTSDAYL 152 A+LKD+ L NAI A+ + +V+ LIDK KL++ DDGKV GL+EQ+T LK S ++L Sbjct: 94 AELKDLKLTNAIKLAIADSAQDVDLVSSLIDKTKLILSDDGKVTGLEEQVTGLKESKSFL 153 Query: 153 FKP 155 FKP Sbjct: 154 FKP 156 >B4BCL5.1 B4BCL5_CLOTM Minor structural GP20 protein Length = 228 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 61/154 (39%), Positives = 93/154 (60%), Gaps = 2/154 (1%) Query: 1 MEWLKELLKKAGVEESKVDGLIGDVNKELPKHFVPKSQYNELTDTKKKLEKDITDRDTQL 60 ME KE L + G+ E + + ++ + KE K F+PK++++E+ + KK LE+ + DRD QL Sbjct: 42 MEMTKEQLMEMGLTEEQAEKVLV-IYKEDLKSFIPKARFDEVNEAKKNLEEQLKDRDKQL 100 Query: 61 EALSKDAGASETLKAEIARLQGENKTTKEKYEADLKDMTLNNAITAAL-NGKVHNEKVVT 119 + L + +E L +I LQ NK KE+YE +K++TL+NAI AL K E ++ Sbjct: 101 KDLGEKVKDNEELTKQIKDLQEANKKAKEEYETKIKNLTLDNAIKLALKEHKAKYEDLLV 160 Query: 120 GLIDKNKLVIGDDGKVVGLDEQLTTLKTSDAYLF 153 D+ KLVI DDG + GL+EQ+ LK + LF Sbjct: 161 NKFDREKLVIKDDGTIEGLNEQIAALKENYKDLF 194 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.307 0.129 0.343 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 987,433,375 Number of extensions: 37201977 Number of successful extensions: 148234 Number of sequences better than 1.0e-05: 70 Number of HSP's gapped: 148203 Number of HSP's successfully gapped: 70 Length of query: 198 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 69 Effective length of database: 1,845,385,268 Effective search space: 127331583492 Effective search space used: 127331583492 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.6 bits) S2: 127 (53.5 bits)