BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0050.0001.p
         (236 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q0TSJ1.1 Q0TSJ1_CLOP1 Putative phage minor capsid protein             103   1e-20
A9KQ14.1 A9KQ14_CLOPH Phage head morphogenesis protein, SPP1 gp7...    89   2e-16
A3QS95.1 A3QS95_9CAUD Putative head morphogenesis protein              75   7e-12
C3J6J4.1 C3J6J4_9BACI Phage putative head morphogenesis protein,...    74   1e-11
B7YF53.1 B7YF53_9BACI Phage putative head morphogenesis protein,...    74   1e-11

>Q0TSJ1.1 Q0TSJ1_CLOP1 Putative phage minor capsid protein
          Length = 545

 Score =  103 bits (256), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/177 (37%), Positives = 96/177 (54%), Gaps = 16/177 (9%)

Query: 48  VIAAGVKEWQGKLRNHLKTNEHLRRDPNREKILGGVSQAEHN---EXXXXXXXXXXIKET 104
           + +  VKE +  L++HL++N+ LRR+  REK   G++  + N   E          IKE 
Sbjct: 381 IASKKVKELEKALKDHLESNKELRRNNYREKAREGLNIKDANIEAEVLKQKFQNAKIKEI 440

Query: 105 RAHIRSEAQPKKILTGQQNKHIPGTHXXXXXXXXXXXXGETGPSYLTIPPDQIEPLVKQY 164
           R  I++  QP KI  G+Q KHI G +               G SYLTI  ++ + L+ +Y
Sbjct: 441 RDFIKNN-QPLKIEVGKQGKHILGHNNYIE-----------GRSYLTISLEEAQELINKY 488

Query: 165 AGTGEIRLNNKGEWNHKETIMTNDAVIGKAVNNLTGAEADTTVFMIHYAKDGVHVVP 221
           AGTG + +++KG W  KE I T D  IG  V+ L G+E  T  F IHY+K G H+VP
Sbjct: 489 AGTGALDMDSKGNWRKKEIIKT-DKKIGVNVSMLDGSENKTNNFKIHYSKKGTHIVP 544


>A9KQ14.1 A9KQ14_CLOPH Phage head morphogenesis protein, SPP1 gp7 family
          Length = 518

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/120 (44%), Positives = 72/120 (60%), Gaps = 12/120 (10%)

Query: 102 KETRAHIRSEAQPKKILTGQQNKHIPGTHXXXXXXXXXXXXGETGPSYLTIPPDQIEPLV 161
           ++ R +IRS+   K I TG+Q KHI G +               G SYLTI   + + LV
Sbjct: 407 QKVRNNIRSDDTVKIIETGKQGKHIKGHNNYIE-----------GRSYLTITEKETQDLV 455

Query: 162 KQYAGTGEIRLNNKGEWNHKETIMTNDAVIGKAVNNLTGAEADTTVFMIHYAKDGVHVVP 221
            +YAGTGEI+ +N+G WN+KE ++     IG +++NLTG E  TT   IHY+K GVHVVP
Sbjct: 456 NKYAGTGEIKRDNRGNWNNKE-VVDFKKEIGISIDNLTGIEYVTTKAKIHYSKKGVHVVP 514


>A3QS95.1 A3QS95_9CAUD Putative head morphogenesis protein
          Length = 465

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 38/77 (49%), Positives = 49/77 (63%), Gaps = 1/77 (1%)

Query: 146 GPSYLTIPPDQIEPLVKQYAGTGEIRLNNKGEWNHKETIMTNDAVIGKAVNNLTGAEADT 205
           G SYLTI  ++ + LV ++AG G I+ N  GEW+ KE I   D  IG  VNN+TG +  T
Sbjct: 389 GRSYLTITKEEAQELVNKHAGNGIIKFNRSGEWDKKELIEV-DKNIGVNVNNITGEKTLT 447

Query: 206 TVFMIHYAKDGVHVVPA 222
             F IHY+K G H+VPA
Sbjct: 448 NKFKIHYSKTGTHIVPA 464


>C3J6J4.1 C3J6J4_9BACI Phage putative head morphogenesis protein, SPP1 gp7
           family
          Length = 220

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/121 (36%), Positives = 62/121 (51%), Gaps = 1/121 (0%)

Query: 102 KETRAHIRSEAQPKKILTGQQNKHIPGTHXXXXXXXXXXXXGETGPSYLTIPPDQIEPLV 161
           ++ RA IR+     +      +KH P               G   PSYLTI  ++   LV
Sbjct: 92  EQIRADIRNGVYKLEHSRNHYDKHNPSHKRYLDYVERNAAKGLHPPSYLTISYEEANELV 151

Query: 162 KQYAGTGEIRLNNKGEWNHKETIMTNDAVIGKAVNNLTGAEADTTVFMIHYAKDGVHVVP 221
           K+YAGTG ++ + KG+W +KE ++  D  IG  V+  TG E  T  F IHY+K G H+VP
Sbjct: 152 KKYAGTGILQFSGKGKWINKE-LIKGDKYIGVYVDQTTGEEVKTKDFKIHYSKTGTHIVP 210

Query: 222 A 222
            
Sbjct: 211 T 211


>B7YF53.1 B7YF53_9BACI Phage putative head morphogenesis protein, SPP1 gp7
           family
          Length = 220

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/121 (36%), Positives = 62/121 (51%), Gaps = 1/121 (0%)

Query: 102 KETRAHIRSEAQPKKILTGQQNKHIPGTHXXXXXXXXXXXXGETGPSYLTIPPDQIEPLV 161
           ++ RA IR+     +      +KH P               G   PSYLTI  ++   LV
Sbjct: 92  EQIRADIRNGVYKLEHSRNHYDKHNPSHKRYLDYVERNAAKGLHPPSYLTISYEEANELV 151

Query: 162 KQYAGTGEIRLNNKGEWNHKETIMTNDAVIGKAVNNLTGAEADTTVFMIHYAKDGVHVVP 221
           K+YAGTG ++ + KG+W +KE ++  D  IG  V+  TG E  T  F IHY+K G H+VP
Sbjct: 152 KKYAGTGILQFSGKGKWINKE-LIKGDKYIGVYVDQTTGEEVKTKDFKIHYSKTGTHIVP 210

Query: 222 A 222
            
Sbjct: 211 T 211


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.312    0.131    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,387,078,745
Number of extensions: 53895205
Number of successful extensions: 89248
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 89249
Number of HSP's successfully gapped: 10
Length of query: 236
Length of database: 3,060,696,203
Length adjustment: 132
Effective length of query: 104
Effective length of database: 1,817,122,223
Effective search space: 188980711192
Effective search space used: 188980711192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 129 (54.3 bits)