BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0049.0003.p
         (798 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B8CZA9.1 B8CZA9_HALOH FMN-binding domain protein                       70   9e-10
B2A6Y2.1 B2A6Y2_NATTJ FMN-binding domain protein                       60   8e-07

>B8CZA9.1 B8CZA9_HALOH FMN-binding domain protein
          Length = 251

 Score = 70.1 bits (170), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 53/158 (33%), Positives = 76/158 (48%), Gaps = 14/158 (8%)

Query: 378 NTSAYIDGFYSSYGTARNVGVERADVVIRNGRLVDVKLYRLGT--NLIDRGATAYAEVVK 435
            TS + DG Y+ Y  A   G   A V I++  + DVKL  + +  N  D     Y   VK
Sbjct: 38  ETSEFEDGTYTGYSNATEHGYAWAKVTIKDDDITDVKLMEITSKGNEKDYETYQYEPSVK 97

Query: 436 ANAPMTAKL-LANGSYIANYNEKVDGISGATESSHGWNQAVERAFGKALKAPAAGRYFDG 494
           A+  M  K   AN + + NY       SGAT SS  + QAVERA  +A +    G+YFDG
Sbjct: 98  AHEEMPEKFERANSADVENY-------SGATHSSEKFKQAVERALIQA-RGGYTGKYFDG 149

Query: 495 KFAGVDNASRI---FILVDVAADQVTSIKLSLFGTDGK 529
            F G  + +       LV +  D++T ++L     +G+
Sbjct: 150 TFQGRSDKTEYGYAVALVTIKDDKITDVELKEVNGEGE 187



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 85/173 (49%), Gaps = 14/173 (8%)

Query: 585 EQGAYKDGTFTAYGDAYDKGTNKADVTLRNGKIVNVALSRVGM--NMVDLGKNAYAEVQK 642
           E   ++DGT+T Y +A + G   A VT+++  I +V L  +    N  D     Y    K
Sbjct: 38  ETSEFEDGTYTGYSNATEHGYAWAKVTIKDDDITDVKLMEITSKGNEKDYETYQYEPSVK 97

Query: 643 ALPQLTANFFAAGTREGVQQVDAVSGATSSSNALKAAVDRAYGKAEVVEAGKAAYFNGTF 702
           A  ++   F  A + +    V+  SGAT SS   K AV+RA  +A     GK  YF+GTF
Sbjct: 98  AHEEMPEKFERANSAD----VENYSGATHSSEKFKQAVERALIQARGGYTGK--YFDGTF 151

Query: 703 IGVSTDKT----VNVMVTVKYNVPVTMVVYYLDAAGKVKAYDQLTEAEKAVKA 751
            G S DKT       +VT+K +    + +  ++  G+ K + Q  + E AV+A
Sbjct: 152 QGRS-DKTEYGYAVALVTIKDDKITDVELKEVNGEGEWKDFSQY-DWEPAVEA 202


>B2A6Y2.1 B2A6Y2_NATTJ FMN-binding domain protein
          Length = 484

 Score = 60.5 bits (145), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 91/174 (52%), Gaps = 25/174 (14%)

Query: 590 KDGTFTAYGDAYDKGTNKADVTLRNGKIVNVAL----SRVGMNMVDLGKNA--YAEVQKA 643
           +DG +TA  +A ++   +A VT+ +G+I +V L    +R     VD   N   +AE  + 
Sbjct: 49  QDGVYTASSEAGERSYTEATVTVDDGEITDVKLYEFDNRGLKKGVDFAYNMERWAEQSED 108

Query: 644 LPQLTANFFAAGTREGVQ--------QVDAVSGATSSSNALKAAVDRAYGKAEVVEAGKA 695
           LP+    +F   T E  Q        +VD +SGAT S+ +   AV+RA GKA+    G+ 
Sbjct: 109 LPE-EFEYFTDVTDELEQKFVEANSYEVDIISGATGSTESAMDAVERALGKAK----GET 163

Query: 696 AYFNGTFIGVSTDKTVN---VMVTVKYNVPVTMVVYYLDAAGKVKAYDQLTEAE 746
             ++GTF+GVS + + +     VT++ N    +V   L+ AGK  AY+   +AE
Sbjct: 164 GPYDGTFMGVSDEGSRSWGIAWVTLEDN---EIVDVRLEEAGKPDAYEPAKKAE 214


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.313    0.130    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 3,312,496,424
Number of extensions: 122632505
Number of successful extensions: 261546
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 261557
Number of HSP's successfully gapped: 5
Length of query: 798
Length of database: 3,060,696,203
Length adjustment: 144
Effective length of query: 654
Effective length of database: 1,704,070,043
Effective search space: 1114461808122
Effective search space used: 1114461808122
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 136 (57.0 bits)