BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0048.0003.p
         (446 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K8E8.1 B3K8E8_9BACI Cupin domain protein                             98   2e-18
Q2BC61.1 Q2BC61_9BACI Putative uncharacterized protein                 96   9e-18
A6CLA2.1 A6CLA2_9BACI Putative uncharacterized protein                 94   2e-17
Q2J0L6.1 Q2J0L6_RHOP2 Putative uncharacterized protein                 86   1e-14
Q21AQ8.1 Q21AQ8_RHOPB Uncharacterized protein containing double-...    80   4e-13

>B3K8E8.1 B3K8E8_9BACI Cupin domain protein
          Length = 166

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 46/77 (59%), Positives = 57/77 (74%)

Query: 317 DAGRRVEVSAGDVLVLPAGTAHKRLTSTQDFRITGAYPGGADYNTRRATPEDFAAALPEI 376
           DAG R+E++ GDV+VLPAGTAH +LTST DF + GAYP G   N R   P D A A+ EI
Sbjct: 83  DAGERLELATGDVIVLPAGTAHMKLTSTPDFEVIGAYPEGNTPNMRERNPTDRAQAINEI 142

Query: 377 REVPLPDSDPVYGEAGP 393
           + VP+PD+DPV+GE GP
Sbjct: 143 QSVPVPDTDPVFGEEGP 159


>Q2BC61.1 Q2BC61_9BACI Putative uncharacterized protein
          Length = 168

 Score = 95.5 bits (236), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 42/77 (54%), Positives = 55/77 (71%)

Query: 317 DAGRRVEVSAGDVLVLPAGTAHKRLTSTQDFRITGAYPGGADYNTRRATPEDFAAALPEI 376
           D G RVEV AGDV+VLPAGT HK + S++DF + GAYP G  ++ ++  P   A AL +I
Sbjct: 85  DGGERVEVKAGDVIVLPAGTGHKNVDSSEDFEVVGAYPDGMSHDLKKKDPGGRAQALSDI 144

Query: 377 REVPLPDSDPVYGEAGP 393
           R VP+P +DPVYG+ GP
Sbjct: 145 RSVPVPATDPVYGDTGP 161


>A6CLA2.1 A6CLA2_9BACI Putative uncharacterized protein
          Length = 169

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/77 (54%), Positives = 55/77 (71%)

Query: 317 DAGRRVEVSAGDVLVLPAGTAHKRLTSTQDFRITGAYPGGADYNTRRATPEDFAAALPEI 376
           ++G++VEV  GDV+VLPAGT HKRLT++QDF + GAYP G D+N +     +    L EI
Sbjct: 84  ESGKKVEVQPGDVVVLPAGTGHKRLTASQDFTVAGAYPDGKDHNLKTDENNERTQLLIEI 143

Query: 377 REVPLPDSDPVYGEAGP 393
           +EV LP  DPVYG +GP
Sbjct: 144 KEVDLPSQDPVYGNSGP 160


>Q2J0L6.1 Q2J0L6_RHOP2 Putative uncharacterized protein
          Length = 177

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/77 (51%), Positives = 53/77 (68%)

Query: 317 DAGRRVEVSAGDVLVLPAGTAHKRLTSTQDFRITGAYPGGADYNTRRATPEDFAAALPEI 376
           D G  +E++ GDV VLPAGT HKRL ++ DF++ GAYP G +    R TP+++  AL  I
Sbjct: 91  DQGEAIELTPGDVAVLPAGTGHKRLFASHDFQVVGAYPPGPEMQIMRPTPDNYRRALKTI 150

Query: 377 REVPLPDSDPVYGEAGP 393
            +VPLP +DPV GE GP
Sbjct: 151 PQVPLPQTDPVAGEDGP 167


>Q21AQ8.1 Q21AQ8_RHOPB Uncharacterized protein containing double-stranded
           beta helix domain-like
          Length = 173

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 38/75 (50%), Positives = 50/75 (66%)

Query: 319 GRRVEVSAGDVLVLPAGTAHKRLTSTQDFRITGAYPGGADYNTRRATPEDFAAALPEIRE 378
           G  V++  GDV +LPAGT HK L ++ DF++ GAYP G      R TP+ +  AL  I +
Sbjct: 93  GEAVQLGIGDVAILPAGTGHKSLFASHDFQVVGAYPPGDTMQVTRPTPDSYRRALQTIPQ 152

Query: 379 VPLPDSDPVYGEAGP 393
           VP+P SDPV+GEAGP
Sbjct: 153 VPVPASDPVFGEAGP 167


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.334    0.143    0.467 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 2,136,061,854
Number of extensions: 74136995
Number of successful extensions: 244898
Number of sequences better than 1.0e-05: 60
Number of HSP's gapped: 244870
Number of HSP's successfully gapped: 60
Length of query: 446
Length of database: 3,060,696,203
Length adjustment: 139
Effective length of query: 307
Effective length of database: 1,751,175,118
Effective search space: 537610761226
Effective search space used: 537610761226
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 133 (55.8 bits)