BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0047.0006.p (473 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K873.1 B3K873_9BACI Transporter 622 e-176 B1DF21.1 B1DF21_9BACL Transporter 567 e-160 C3J2M9.1 C3J2M9_9BACI Putative uncharacterized protein 499 e-139 B7YBG5.1 B7YBG5_9BACI Putative uncharacterized protein 499 e-139 Q5L285.1 Q5L285_GEOKA Hypothetical conserved protein 499 e-139 >B3K873.1 B3K873_9BACI Transporter Length = 471 Score = 622 bits (1605), Expect = e-176, Method: Compositional matrix adjust. Identities = 329/473 (69%), Positives = 366/473 (77%), Gaps = 2/473 (0%) Query: 1 MGIQLTAIHWVYLTFIVFIMVLMIRRRDTTMICVAGIFXXXXXXXXXXXXXXXXIFNSFV 60 MGI LTAIHWVYL FIV IM L+IRRRDTT++C+ GIF +FNSF+ Sbjct: 1 MGIHLTAIHWVYLAFIVLIMTLLIRRRDTTLVCITGIFALGILATETLSGSVSGVFNSFI 60 Query: 61 YATKELLGTIMIISIIVAMSRILMITGINETMVAPLTRFIRTPCMAYWGIGLIMMVTSFF 120 YATKEL+GTIMIISIIVAMSR+L+ TGINETMVAPLTRF+RTP MAYWGIG+IMMVTSFF Sbjct: 61 YATKELMGTIMIISIIVAMSRVLIKTGINETMVAPLTRFLRTPAMAYWGIGIIMMVTSFF 120 Query: 121 FWPSXXXXXXXXXXXXXXXXXXXXXXGAAVAMNLFGHGIALSGDYIIQGAPKITSDAAGL 180 FWPS GAAVAMNLFGHGIALSGDYIIQGAPK+T+DAAGL Sbjct: 121 FWPSPAVALIGAVLLPVAIRVGLPALGAAVAMNLFGHGIALSGDYIIQGAPKLTADAAGL 180 Query: 181 PVASVMEASIPLVIVMGLVTTIAAFWMMRRDRQNGTWRDGLVSVQGSTGRLRGPDAAGGE 240 PVASVM AS+PLVIVMGLVTT+AAFWMM+RD++NG+WRDGLVS++ STG + Sbjct: 181 PVASVMAASVPLVIVMGLVTTVAAFWMMKRDQRNGSWRDGLVSIK-STGDALTTRTDEDD 239 Query: 241 ETPVLLPARLRQGLAVAIPLLFLLDVAAMFALNLQGGDATALIGGTAVLILISVTLLAHR 300 + P +++ LA+AI LLF DVAAMF L LQGGDATAL+GGTAVLIL + L+AHR Sbjct: 240 TVAAVSPG-MKKWLAIAILLLFAADVAAMFILKLQGGDATALVGGTAVLILGVIALVAHR 298 Query: 301 NQGLEKVTSYLIEXXXXXXXXXXXXIPIAAFFYLGDSAFTGLFGKVLPAGSHGIVNDLGV 360 N+GLEKVTSYLIE IPIAAFFYLGD+AF+ LFGKVLP SHGIVNDLGV Sbjct: 299 NRGLEKVTSYLIEGFMFGFKVFGPVIPIAAFFYLGDAAFSDLFGKVLPEASHGIVNDLGV 358 Query: 361 ALADHVPLNGAVGAVTMTAIGAITGLDGSGFSGISLAGSIAQLFAAAIHSGAATLTALGQ 420 ALA+ VPLNGAVG+VT+T GAITGLDGSGFSGISLAGSIAQLFA AI SGAATLTALGQ Sbjct: 359 ALANAVPLNGAVGSVTLTITGAITGLDGSGFSGISLAGSIAQLFATAIGSGAATLTALGQ 418 Query: 421 VAAIWVGGGTXXXXXXXXXXXXCGVSPFELARRNLKPVLLGLVATTIVAMFLV 473 VAAIWVGGGT CGVSPFELARRNLKPVLLGL TT+VAMFLV Sbjct: 419 VAAIWVGGGTLIPWALIPAAAICGVSPFELARRNLKPVLLGLAVTTVVAMFLV 471 >B1DF21.1 B1DF21_9BACL Transporter Length = 470 Score = 567 bits (1461), Expect = e-160, Method: Compositional matrix adjust. Identities = 291/473 (61%), Positives = 345/473 (72%), Gaps = 3/473 (0%) Query: 1 MGIQLTAIHWVYLTFIVFIMVLMIRRRDTTMICVAGIFXXXXXXXXXXXXXXXXIFNSFV 60 M I L A+HWVYL FIV I+ M+ RRDT++IC+ GIF +FNSF+ Sbjct: 1 MAIDLVALHWVYLVFIVAIIGFMVMRRDTSLICIVGIFVLGLLATESLSDSVSGVFNSFI 60 Query: 61 YATKELLGTIMIISIIVAMSRILMITGINETMVAPLTRFIRTPCMAYWGIGLIMMVTSFF 120 YA KEL+GTI+IISIIVAMSR+L+ TGINE M++P RF+RTP +A+WGIGLIMMVTS+F Sbjct: 61 YAIKELMGTILIISIIVAMSRVLIRTGINEVMISPFARFLRTPTLAFWGIGLIMMVTSWF 120 Query: 121 FWPSXXXXXXXXXXXXXXXXXXXXXXGAAVAMNLFGHGIALSGDYIIQGAPKITSDAAGL 180 FWPS GAA+AMNLFGHGIALSGDYIIQGAPK+T+DAAGL Sbjct: 121 FWPSPAVALIGAVLLPVALRVGLPALGAAMAMNLFGHGIALSGDYIIQGAPKLTADAAGL 180 Query: 181 PVASVMEASIPLVIVMGLVTTIAAFWMMRRDRQNGTWRDGLVSVQGSTGRLRGPDAAGGE 240 PV+ VM+ASIPLVIVMGLVTT+ AFWMMRRD + G W DG++S L G D + Sbjct: 181 PVSEVMQASIPLVIVMGLVTTVTAFWMMRRDMKTGKWNDGIISKVEGDKELTGEDDLAFK 240 Query: 241 ETPVLLPARLRQGLAVAIPLLFLLDVAAMFALNLQGGDATALIGGTAVLILISVTLLAHR 300 +L + LA+ IP+LF +DV MF ++LQGGDATAL+GGTA+ IL+ +T+LAH+ Sbjct: 241 N---VLSHGTKLTLAILIPVLFAVDVVTMFVMDLQGGDATALVGGTAIFILLIITMLAHK 297 Query: 301 NQGLEKVTSYLIEXXXXXXXXXXXXIPIAAFFYLGDSAFTGLFGKVLPAGSHGIVNDLGV 360 N+GLEK T+YLIE IPIAAFFYLGDS FT +FG LPAGS GIVNDLGV Sbjct: 298 NKGLEKTTNYLIEGFLFGFKVFGPVIPIAAFFYLGDSGFTAIFGDTLPAGSQGIVNDLGV 357 Query: 361 ALADHVPLNGAVGAVTMTAIGAITGLDGSGFSGISLAGSIAQLFAAAIHSGAATLTALGQ 420 ALA++VP+NG VG+VT+T +GA+TGLDGSGFSGISLAGSIA LF AI SG ATLTALGQ Sbjct: 358 ALANNVPVNGEVGSVTLTLVGAVTGLDGSGFSGISLAGSIAHLFGGAIGSGVATLTALGQ 417 Query: 421 VAAIWVGGGTXXXXXXXXXXXXCGVSPFELARRNLKPVLLGLVATTIVAMFLV 473 VAAIWVGGGT CGVSPFELARRNLKPV++GL TT+VAMFLV Sbjct: 418 VAAIWVGGGTLVPWALIPAAAICGVSPFELARRNLKPVIIGLCVTTVVAMFLV 470 >C3J2M9.1 C3J2M9_9BACI Putative uncharacterized protein Length = 466 Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust. Identities = 263/473 (55%), Positives = 322/473 (68%), Gaps = 7/473 (1%) Query: 1 MGIQLTAIHWVYLTFIVFIMVLMIRRRDTTMICVAGIFXXXXXXXXXXXXXXXXIFNSFV 60 MG++L A+HW+YL FIV I+ M+ R+DT++IC+AGIF +FNSF+ Sbjct: 1 MGVELVALHWIYLLFIVLIIGFMVARKDTSLICIAGIFLLAAVATHSLSAAVSGVFNSFI 60 Query: 61 YATKELLGTIMIISIIVAMSRILMITGINETMVAPLTRFIRTPCMAYWGIGLIMMVTSFF 120 YA ELL TI++ISIIVAMS++L TGIN+ MV+P RFIRTP AYW IG++MM+ S+F Sbjct: 61 YAITELLPTILVISIIVAMSKVLSATGINDVMVSPFVRFIRTPAWAYWTIGILMMIISWF 120 Query: 121 FWPSXXXXXXXXXXXXXXXXXXXXXXGAAVAMNLFGHGIALSGDYIIQGAPKITSDAAGL 180 FWPS GAA+AMNLFGHGIALSGD+IIQGAPK+T+DAAGL Sbjct: 121 FWPSPAVALMGAVLLPAAVRVGLPALGAAMAMNLFGHGIALSGDFIIQGAPKLTADAAGL 180 Query: 181 PVASVMEASIPLVIVMGLVTTIAAFWMMRRDRQNGTWRDGLVSVQGSTGRLRGPDAAGGE 240 PV V+ AS+PLV VMG VTT+ AF ++RRD + G G + + E Sbjct: 181 PVGDVIAASVPLVFVMGAVTTVTAFCLLRRDMKRGRLASGEAEMAATVDSTL-------E 233 Query: 241 ETPVLLPARLRQGLAVAIPLLFLLDVAAMFALNLQGGDATALIGGTAVLILISVTLLAHR 300 +T LL + ++ LA+ IP+LF LDV AMF L LQGG+ATAL+GGTA+ ILI +++LAHR Sbjct: 234 KTGHLLTGQTKKWLALLIPILFALDVIAMFYLRLQGGEATALVGGTAIFILILISVLAHR 293 Query: 301 NQGLEKVTSYLIEXXXXXXXXXXXXIPIAAFFYLGDSAFTGLFGKVLPAGSHGIVNDLGV 360 + +VT+Y IE IPIAAFFYLGD+ F + G LP S GIVNDLG+ Sbjct: 294 QESFAEVTNYFIEGFQFGFKVFGPVIPIAAFFYLGDAGFVKIIGDYLPQASQGIVNDLGI 353 Query: 361 ALADHVPLNGAVGAVTMTAIGAITGLDGSGFSGISLAGSIAQLFAAAIHSGAATLTALGQ 420 ALA V LN VGAVT+T +GAITGLDGSGFSGISLAGSIA LF+ AI GAATLTALGQ Sbjct: 354 ALAHAVSLNNEVGAVTLTIVGAITGLDGSGFSGISLAGSIAHLFSVAIGGGAATLTALGQ 413 Query: 421 VAAIWVGGGTXXXXXXXXXXXXCGVSPFELARRNLKPVLLGLVATTIVAMFLV 473 +AAIWVGGGT CGV PFELARRNL PV +GLV TT+VAMFL+ Sbjct: 414 IAAIWVGGGTLVPWALIPAAAICGVDPFELARRNLIPVAVGLVVTTVVAMFLI 466 >B7YBG5.1 B7YBG5_9BACI Putative uncharacterized protein Length = 466 Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust. Identities = 263/473 (55%), Positives = 322/473 (68%), Gaps = 7/473 (1%) Query: 1 MGIQLTAIHWVYLTFIVFIMVLMIRRRDTTMICVAGIFXXXXXXXXXXXXXXXXIFNSFV 60 MG++L A+HW+YL FIV I+ M+ R+DT++IC+AGIF +FNSF+ Sbjct: 1 MGVELVALHWIYLLFIVLIIGFMVARKDTSLICIAGIFLLAAVATHSLSAAVSGVFNSFI 60 Query: 61 YATKELLGTIMIISIIVAMSRILMITGINETMVAPLTRFIRTPCMAYWGIGLIMMVTSFF 120 YA ELL TI++ISIIVAMS++L TGIN+ MV+P RFIRTP AYW IG++MM+ S+F Sbjct: 61 YAITELLPTILVISIIVAMSKVLSATGINDVMVSPFVRFIRTPAWAYWTIGILMMIISWF 120 Query: 121 FWPSXXXXXXXXXXXXXXXXXXXXXXGAAVAMNLFGHGIALSGDYIIQGAPKITSDAAGL 180 FWPS GAA+AMNLFGHGIALSGD+IIQGAPK+T+DAAGL Sbjct: 121 FWPSPAVALMGAVLLPAAVRVGLPALGAAMAMNLFGHGIALSGDFIIQGAPKLTADAAGL 180 Query: 181 PVASVMEASIPLVIVMGLVTTIAAFWMMRRDRQNGTWRDGLVSVQGSTGRLRGPDAAGGE 240 PV V+ AS+PLV VMG VTT+ AF ++RRD + G G + + E Sbjct: 181 PVGDVIAASVPLVFVMGAVTTVTAFCLLRRDMKRGRLASGEAEMAATVDSTL-------E 233 Query: 241 ETPVLLPARLRQGLAVAIPLLFLLDVAAMFALNLQGGDATALIGGTAVLILISVTLLAHR 300 +T LL + ++ LA+ IP+LF LDV AMF L LQGG+ATAL+GGTA+ ILI +++LAHR Sbjct: 234 KTGHLLTGQTKKWLALLIPILFALDVIAMFYLRLQGGEATALVGGTAIFILILISVLAHR 293 Query: 301 NQGLEKVTSYLIEXXXXXXXXXXXXIPIAAFFYLGDSAFTGLFGKVLPAGSHGIVNDLGV 360 + +VT+Y IE IPIAAFFYLGD+ F + G LP S GIVNDLG+ Sbjct: 294 QESFAEVTNYFIEGFQFGFKVFGPVIPIAAFFYLGDAGFVKIIGDYLPQASQGIVNDLGI 353 Query: 361 ALADHVPLNGAVGAVTMTAIGAITGLDGSGFSGISLAGSIAQLFAAAIHSGAATLTALGQ 420 ALA V LN VGAVT+T +GAITGLDGSGFSGISLAGSIA LF+ AI GAATLTALGQ Sbjct: 354 ALAHAVSLNNEVGAVTLTIVGAITGLDGSGFSGISLAGSIAHLFSVAIGGGAATLTALGQ 413 Query: 421 VAAIWVGGGTXXXXXXXXXXXXCGVSPFELARRNLKPVLLGLVATTIVAMFLV 473 +AAIWVGGGT CGV PFELARRNL PV +GLV TT+VAMFL+ Sbjct: 414 IAAIWVGGGTLVPWALIPAAAICGVDPFELARRNLIPVAVGLVVTTVVAMFLI 466 >Q5L285.1 Q5L285_GEOKA Hypothetical conserved protein Length = 466 Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust. Identities = 262/473 (55%), Positives = 321/473 (67%), Gaps = 7/473 (1%) Query: 1 MGIQLTAIHWVYLTFIVFIMVLMIRRRDTTMICVAGIFXXXXXXXXXXXXXXXXIFNSFV 60 MG++L A+HW+YL FIV I+ M+ R+DT++IC+AGIF +FNSF+ Sbjct: 1 MGVELVALHWIYLLFIVLIIGFMVARKDTSLICIAGIFLLAAVATHSLSAAVSGVFNSFI 60 Query: 61 YATKELLGTIMIISIIVAMSRILMITGINETMVAPLTRFIRTPCMAYWGIGLIMMVTSFF 120 YA ELL TI++ISIIVAMS++L TGIN+ MV+P RFIRTP AYW IG++MM+ S+F Sbjct: 61 YAITELLPTILVISIIVAMSKVLSATGINDVMVSPFVRFIRTPAWAYWTIGILMMIISWF 120 Query: 121 FWPSXXXXXXXXXXXXXXXXXXXXXXGAAVAMNLFGHGIALSGDYIIQGAPKITSDAAGL 180 FWPS G A+AMNLFGHGIALSGD+IIQGAPK+T+DAAGL Sbjct: 121 FWPSPAVALMGAVLLPAAVRVGLPALGVAMAMNLFGHGIALSGDFIIQGAPKLTADAAGL 180 Query: 181 PVASVMEASIPLVIVMGLVTTIAAFWMMRRDRQNGTWRDGLVSVQGSTGRLRGPDAAGGE 240 V V+ AS+PLV VMG VTT+ AF+++RRD + G G + + E Sbjct: 181 SVGDVIAASVPLVFVMGAVTTVTAFYLLRRDMKRGRLASGEAEMAATVDSTL-------E 233 Query: 241 ETPVLLPARLRQGLAVAIPLLFLLDVAAMFALNLQGGDATALIGGTAVLILISVTLLAHR 300 +T LL + ++ LA+ IP+LF LDV AMF L LQGG+ATAL+GGTA+ ILI +++LAHR Sbjct: 234 KTSHLLTGQTKKWLALLIPILFALDVIAMFYLRLQGGEATALVGGTAIFILILISVLAHR 293 Query: 301 NQGLEKVTSYLIEXXXXXXXXXXXXIPIAAFFYLGDSAFTGLFGKVLPAGSHGIVNDLGV 360 + +VT+Y IE IPIAAFFYLGD+ F + G LP S GIVNDLGV Sbjct: 294 QESFAEVTNYFIEGFQFGFKVFGPVIPIAAFFYLGDAGFVKIIGDYLPQASQGIVNDLGV 353 Query: 361 ALADHVPLNGAVGAVTMTAIGAITGLDGSGFSGISLAGSIAQLFAAAIHSGAATLTALGQ 420 ALA VPLN VGAVT+T +GAITGLDGSGFSGISLAGSIA LF+ AI G ATLTALGQ Sbjct: 354 ALAHAVPLNNEVGAVTLTIVGAITGLDGSGFSGISLAGSIAHLFSVAIGGGTATLTALGQ 413 Query: 421 VAAIWVGGGTXXXXXXXXXXXXCGVSPFELARRNLKPVLLGLVATTIVAMFLV 473 +AAIWVGGGT CGV PFELARRNL PV +GLV TT+VAMFL+ Sbjct: 414 IAAIWVGGGTLVPWALIPAAAICGVDPFELARRNLIPVAVGLVVTTVVAMFLI 466 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.141 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,247,666,846 Number of extensions: 83739206 Number of successful extensions: 380722 Number of sequences better than 1.0e-05: 133 Number of HSP's gapped: 380235 Number of HSP's successfully gapped: 143 Length of query: 473 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 333 Effective length of database: 1,741,754,103 Effective search space: 580004116299 Effective search space used: 580004116299 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 133 (55.8 bits)