BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0047.0002.p (273 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A6TKI7.1 A6TKI7_ALKMQ Putative transcriptional regulator, MerR f... 283 8e-75 Q24R55.1 Q24R55_DESHY Putative uncharacterized protein 221 4e-56 B8FPH8.1 B8FPH8_DESHD Transcriptional regulator, MerR family 221 7e-56 Q3A2I5.1 Q3A2I5_PELCD Transcriptional regulator, MerR family 123 2e-26 C0D7Q7.1 C0D7Q7_9CLOT Putative uncharacterized protein 111 9e-23 >A6TKI7.1 A6TKI7_ALKMQ Putative transcriptional regulator, MerR family Length = 272 Score = 283 bits (725), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 133/271 (49%), Positives = 191/271 (70%) Query: 1 MKYSIGEFASILGVTADTLRLYEKHDIVRPMKDQHNNYRYFSDLDARNLLSSRWYRSMQI 60 MKYSIG+FA+ LGVT DTLRLYEK+ I+ P+K+ NNYRYF+DLDARNLL+SRWYRS+QI Sbjct: 1 MKYSIGQFAATLGVTVDTLRLYEKYGIISPIKNSENNYRYFNDLDARNLLTSRWYRSIQI 60 Query: 61 PLQDVAGLINDAPAEQVIQSIAGARQQLEEEIKRSVMLLDKINEIHAELGRIGEALYACR 120 PLQD A L +A + + + + + LE EIK+S MLL+KI I+ EL I + C+ Sbjct: 61 PLQDAAILTQNASLDNIAEKVNETQLNLEAEIKKSTMLLNKIVGINKELKEIKTEINKCK 120 Query: 121 IREVPGMYRIQQTDKNQLLQKECLKRTVQAWMELLPFTFYSFRIENPESVLGTEELEYSW 180 I+ +PGMYR++QT N L+Q++ L+ V WM LP+TF+SFRIE E V + EYSW Sbjct: 121 IKAMPGMYRLKQTKGNVLIQEDFLRDLVDTWMNALPYTFFSFRIEKKEIVSLKKAFEYSW 180 Query: 181 GLALLETDQRKLEVGVNESMEYIGPSTCISAVIASAYEKELGRESFQFMLDFAGAEGLAI 240 GLA+ E + +V +NE++EYI P +S++I S+ + + R+S QFM+D+ I Sbjct: 181 GLAIFEDEIGCFDVKMNENVEYISPKVYLSSIILSSQGEHITRDSIQFMMDYIKENNYKI 240 Query: 241 TGDIRGKILFTERMSRGNQTYLEIDIPLENN 271 T DI GKI+ TE+++ N++YLE++IP++++ Sbjct: 241 TEDIIGKIILTEKINGKNKSYLELNIPIQSH 271 >Q24R55.1 Q24R55_DESHY Putative uncharacterized protein Length = 272 Score = 221 bits (564), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 105/269 (39%), Positives = 168/269 (62%) Query: 1 MKYSIGEFASILGVTADTLRLYEKHDIVRPMKDQHNNYRYFSDLDARNLLSSRWYRSMQI 60 MKY IGEF+ +LGVT DTL+ YE I+ P+KD+ NNYRYF D DAR ++ SR RS+ + Sbjct: 1 MKYRIGEFSKLLGVTVDTLKHYESLQIIEPLKDEKNNYRYFDDYDARTIIKSRTLRSLNL 60 Query: 61 PLQDVAGLINDAPAEQVIQSIAGARQQLEEEIKRSVMLLDKINEIHAELGRIGEALYACR 120 PL DVA L+ V++ + ++Q L+E+I ++ +LL+K+ E+ E+ I +L+ + Sbjct: 61 PLDDVAKLMASDSTTDVVEKMEESKQALKEQIHKNTLLLNKMTEVQDEIIAINSSLHKFK 120 Query: 121 IREVPGMYRIQQTDKNQLLQKECLKRTVQAWMELLPFTFYSFRIENPESVLGTEELEYSW 180 I+ +PG+YR+Q TDK+ LL+ ++ V +WM LP+TF FRI+ E + G E +Y W Sbjct: 121 IKSLPGLYRLQHTDKDHLLKNSSIENAVSSWMNALPYTFSCFRIKTEEFLSGLEIYDYDW 180 Query: 181 GLALLETDQRKLEVGVNESMEYIGPSTCISAVIASAYEKELGRESFQFMLDFAGAEGLAI 240 G A+ E + +++ + E +EYI P T +S V++S + S +++ + AI Sbjct: 181 GQAIWENELEYVDLKITEDIEYIPPQTYLSTVLSSTNREYFLSNSRALIMNQINEQPYAI 240 Query: 241 TGDIRGKILFTERMSRGNQTYLEIDIPLE 269 GDI GK++FT + +Y+EI IP++ Sbjct: 241 MGDIVGKLIFTSIKNGRRISYIEIYIPVQ 269 >B8FPH8.1 B8FPH8_DESHD Transcriptional regulator, MerR family Length = 272 Score = 221 bits (562), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 105/269 (39%), Positives = 168/269 (62%) Query: 1 MKYSIGEFASILGVTADTLRLYEKHDIVRPMKDQHNNYRYFSDLDARNLLSSRWYRSMQI 60 MKY IGEF+ +LGVT DTL+ YE I+ P+KD+ NNYRYF D DAR ++ SR RS+ + Sbjct: 1 MKYRIGEFSKLLGVTVDTLKHYESLQIIEPLKDEKNNYRYFDDYDARTIIKSRTLRSLNL 60 Query: 61 PLQDVAGLINDAPAEQVIQSIAGARQQLEEEIKRSVMLLDKINEIHAELGRIGEALYACR 120 PL DVA L+ V++ + ++Q L+E+I ++ +LL+K+ E+ E+ I +L+ + Sbjct: 61 PLDDVAKLMASDSTTDVVEIMEESKQALKEQIHKNTLLLNKMTEVQDEIIAINSSLHKFK 120 Query: 121 IREVPGMYRIQQTDKNQLLQKECLKRTVQAWMELLPFTFYSFRIENPESVLGTEELEYSW 180 I+ +PG+YR+Q TDK+ LL+ ++ V +WM LP+TF FRI+ E + G E +Y W Sbjct: 121 IKSLPGLYRLQHTDKDHLLKNSSIENAVSSWMNALPYTFSCFRIKTEEFLSGLEIYDYDW 180 Query: 181 GLALLETDQRKLEVGVNESMEYIGPSTCISAVIASAYEKELGRESFQFMLDFAGAEGLAI 240 G A+ E + +++ + E +EYI P T +S V++S + S +++ + AI Sbjct: 181 GQAIWENELEYVDLKITEDIEYIPPQTYLSTVLSSTNREYFLSNSRALIMNQINEQPYAI 240 Query: 241 TGDIRGKILFTERMSRGNQTYLEIDIPLE 269 GDI GK++FT + +Y+EI IP++ Sbjct: 241 MGDIVGKLIFTSIKNGRRISYIEIYIPVQ 269 >Q3A2I5.1 Q3A2I5_PELCD Transcriptional regulator, MerR family Length = 268 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 74/269 (27%), Positives = 132/269 (49%), Gaps = 2/269 (0%) Query: 1 MKYSIGEFASILGVTADTLRLYEKHDIVRPMKDQHNNYRYFSDLDARNLLSSRWYRSMQI 60 MKY I E A +LG+T + +R YE+ +I++P K + YR +S D LL +R YR Sbjct: 1 MKYKISEVAKMLGITPEAIRYYEQQNIIKPSKSDSSGYRSYSVWDMHALLHARSYRQYGF 60 Query: 61 PLQDVAGLINDAPAEQVIQSIAGARQQLEEEIKRSVMLLDKINEIHAELGRIGEALYACR 120 L + A LIN+ E +I + +LE+E ++ L+ I+ + + + R Sbjct: 61 TLSETADLINNCDLEDIIGKLQDKTTELEKEAAYALSLVKSIHHMQEIMADAETFIGKYR 120 Query: 121 IREVPGMYRIQQTDKNQLLQKECLKRTVQAWMELLPFTFYSFRIENPESVLGTEELEYSW 180 I + P MYR+ D+ L++ +K+ W+E +PF F S R E G + ++ + Sbjct: 121 IEQRPAMYRLDNEDQYVLIKDPQIKKETCRWIEHVPFVFTSARWTKEEYEQGGK--KHYF 178 Query: 181 GLALLETDQRKLEVGVNESMEYIGPSTCISAVIASAYEKELGRESFQFMLDFAGAEGLAI 240 GL + E L + + Y+ +C+ VI S K L + Q + + +G+++ Sbjct: 179 GLCIEEEFADFLPDDLPPYITYLPSRSCVYTVIQSCPSKRLTPQRLQPAIAYMREQGMSL 238 Query: 241 TGDIRGKILFTERMSRGNQTYLEIDIPLE 269 TGDI +++ + + Y ++ +P E Sbjct: 239 TGDIISRVVNYRKTTDEYVNYHQVWLPFE 267 >C0D7Q7.1 C0D7Q7_9CLOT Putative uncharacterized protein Length = 274 Score = 111 bits (277), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 76/250 (30%), Positives = 123/250 (49%), Gaps = 6/250 (2%) Query: 2 KYSIGEFASILGVTADTLRLYEKHDIVRPMKDQHNNYRYFSDLDARNLLSSRWYRSMQIP 61 KYSIG A +LG++A+ +R YE +I++P++D YRY++ D LL +R Y++ Sbjct: 4 KYSIGTMARLLGISAEAIRYYESRNIIQPVRDPETGYRYYNTWDFHMLLRARHYQNYGFS 63 Query: 62 LQDVAGLINDAPAEQVIQSIAGARQQLEEEIKRSVMLLDKINEIHAELGRIGEALYACRI 121 L++VA L + + ++ EI R + LL +I + A L ++ RI Sbjct: 64 LEEVADLFRSRELSGIQAQMGLQEAGIQREIVRQINLLKRIRQSQAMLEDAVNSVGQYRI 123 Query: 122 REVPGMYRIQQTDKNQLL--QKECLKRTVQAWMELLPFTFYSFRIENPESVLGTEELEYS 179 E PG+YR+ T KN L KE LK ++ W PF + E G E + Sbjct: 124 EERPGIYRM-NTQKNYTLCRSKEELK-LIEEWAGKTPFVYSCAVFYEEEIRKG--ETGFD 179 Query: 180 WGLALLETDQRKLEVGVNESMEYIGPSTCISAVIASAYEKELGRESFQFMLDFAGAEGLA 239 +G+ L E R LEV + ++Y P C+ + S + L S + LD+ + GL Sbjct: 180 FGMGLNEEYARFLEVEETDQVQYYPPCLCVHTCLPSRSGQYLSLNSLKDSLDYLKSNGLE 239 Query: 240 ITGDIRGKIL 249 + GDI +++ Sbjct: 240 LQGDIVTQVV 249 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.136 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,544,177,569 Number of extensions: 60187465 Number of successful extensions: 175487 Number of sequences better than 1.0e-05: 80 Number of HSP's gapped: 175999 Number of HSP's successfully gapped: 80 Length of query: 273 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 139 Effective length of database: 1,798,280,193 Effective search space: 249960946827 Effective search space used: 249960946827 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)