BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0045.0005.p
         (118 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K8C7.1 B3K8C7_9BACI Excinuclease ABC C subunit domain protein       189   5e-47
B1D719.1 B1D719_9BACL Excinuclease ABC C subunit domain protein       185   1e-45
A7Z8H5.1 A7Z8H5_BACA2 YurQ                                            168   1e-40
A7GPT2.1 A7GPT2_BACCN Excinuclease ABC C subunit domain protein       161   2e-38
C3BKX1.1 C3BKX1_9BACI Putative uncharacterized protein                160   4e-38

>B3K8C7.1 B3K8C7_9BACI Excinuclease ABC C subunit domain protein
          Length = 118

 Score =  189 bits (481), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 89/118 (75%), Positives = 104/118 (88%)

Query: 1   MISITIPAPDVTIMKQENPVLSHIYGFTDFHLITREKGGIFMFYNDKDELLFVGKARKLR 60
           MI ITIP PDVTI KQ+ P LSHIYGFTDFHLI R++GGIFMFYN K+ELLFVGKARKLR
Sbjct: 1   MIDITIPKPDVTITKQDAPELSHIYGFTDFHLIPRDRGGIFMFYNSKEELLFVGKARKLR 60

Query: 61  PRIKKHFEDNVSVMKPHRDEVAKIEVCIIDDAVDREIYETYIVNKLRAKYNVEKVLYK 118
           PRIKKHFED+VS +K HR+EV  IEVC+I+DAV REIYETYI+N+ +AKYNV+KV ++
Sbjct: 61  PRIKKHFEDSVSPIKEHRNEVTSIEVCVIEDAVHREIYETYIINEFKAKYNVDKVFFR 118


>B1D719.1 B1D719_9BACL Excinuclease ABC C subunit domain protein
          Length = 118

 Score =  185 bits (470), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 88/118 (74%), Positives = 104/118 (88%)

Query: 1   MISITIPAPDVTIMKQENPVLSHIYGFTDFHLITREKGGIFMFYNDKDELLFVGKARKLR 60
           MI+ITIP PDVTI KQ NP LSHIY FTDFHLITREKGG F+FYN K ++LFVGKARKLR
Sbjct: 1   MITITIPEPDVTIYKQTNPQLSHIYNFTDFHLITREKGGFFIFYNFKGDVLFVGKARKLR 60

Query: 61  PRIKKHFEDNVSVMKPHRDEVAKIEVCIIDDAVDREIYETYIVNKLRAKYNVEKVLYK 118
           PRIKKHFED+VS MK +RDEV KIE+ + +DAV+REIYETY++N+ RAKYNV+KVL++
Sbjct: 61  PRIKKHFEDSVSPMKNYRDEVTKIEIYVNEDAVEREIYETYLINQFRAKYNVDKVLFR 118


>A7Z8H5.1 A7Z8H5_BACA2 YurQ
          Length = 124

 Score =  168 bits (426), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 82/124 (66%), Positives = 98/124 (79%), Gaps = 6/124 (4%)

Query: 1   MISITIPAPDVTIMKQEN------PVLSHIYGFTDFHLITREKGGIFMFYNDKDELLFVG 54
           MI I +PAPDVTI +++       P +  IYGF DFH I R+KGGIFMFYN  DELLFVG
Sbjct: 1   MIKINLPAPDVTITERQQSPSENEPAIKAIYGFIDFHQIPRDKGGIFMFYNIHDELLFVG 60

Query: 55  KARKLRPRIKKHFEDNVSVMKPHRDEVAKIEVCIIDDAVDREIYETYIVNKLRAKYNVEK 114
           KARKLR RIKKHFEDNVS +K HRDEV KIEVC+++D ++REIYETY +N L++KYN+EK
Sbjct: 61  KARKLRQRIKKHFEDNVSPVKHHRDEVYKIEVCVVNDPMEREIYETYAINTLQSKYNIEK 120

Query: 115 VLYK 118
           V YK
Sbjct: 121 VFYK 124


>A7GPT2.1 A7GPT2_BACCN Excinuclease ABC C subunit domain protein
          Length = 124

 Score =  161 bits (407), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 79/124 (63%), Positives = 99/124 (79%), Gaps = 6/124 (4%)

Query: 1   MISITIPAPDVTI------MKQENPVLSHIYGFTDFHLITREKGGIFMFYNDKDELLFVG 54
           MI I IPA D++I      +K + P ++ I+GF DFHL  R+KGGIFMFYN  DELLFVG
Sbjct: 1   MIKIDIPAVDISITERKQIIKGDEPRITPIHGFIDFHLFPRDKGGIFMFYNIHDELLFVG 60

Query: 55  KARKLRPRIKKHFEDNVSVMKPHRDEVAKIEVCIIDDAVDREIYETYIVNKLRAKYNVEK 114
           KARK+R RIKKHFEDNVS MK HRDEV +I+VC+++D ++REIYETYI+N L+AKYN++K
Sbjct: 61  KARKIRQRIKKHFEDNVSPMKAHRDEVYRIDVCLVEDPMEREIYETYIINTLQAKYNIDK 120

Query: 115 VLYK 118
           V YK
Sbjct: 121 VFYK 124


>C3BKX1.1 C3BKX1_9BACI Putative uncharacterized protein
          Length = 124

 Score =  160 bits (405), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 79/124 (63%), Positives = 100/124 (80%), Gaps = 6/124 (4%)

Query: 1   MISITIPAPDVTI------MKQENPVLSHIYGFTDFHLITREKGGIFMFYNDKDELLFVG 54
           MI I +PA DV+I      +K + P ++ I+GF DFHL  R+KGGIFMFYN  DELLFVG
Sbjct: 1   MIKIDLPAVDVSITERKQVIKGDEPRITPIHGFIDFHLFPRDKGGIFMFYNINDELLFVG 60

Query: 55  KARKLRPRIKKHFEDNVSVMKPHRDEVAKIEVCIIDDAVDREIYETYIVNKLRAKYNVEK 114
           KARK+R RIKKHFEDNVS ++ HRDEV +I+VCI++D ++REIYETYI+N+L+AKYNV+K
Sbjct: 61  KARKIRQRIKKHFEDNVSPIQAHRDEVYRIDVCIVEDPMEREIYETYIINELQAKYNVDK 120

Query: 115 VLYK 118
           V YK
Sbjct: 121 VFYK 124


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.324    0.142    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 711,189,630
Number of extensions: 27665862
Number of successful extensions: 64192
Number of sequences better than 1.0e-05: 85
Number of HSP's gapped: 64678
Number of HSP's successfully gapped: 85
Length of query: 118
Length of database: 3,060,696,203
Length adjustment: 84
Effective length of query: 34
Effective length of database: 2,269,330,943
Effective search space: 77157252062
Effective search space used: 77157252062
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 126 (53.1 bits)