BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0044.0021.p
         (228 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K8P4.1 B3K8P4_9BACI Putative uncharacterized protein                165   3e-39
B1DC43.1 B1DC43_9BACL Putative uncharacterized protein                 96   3e-18

>B3K8P4.1 B3K8P4_9BACI Putative uncharacterized protein
          Length = 226

 Score =  165 bits (417), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 95/225 (42%), Positives = 135/225 (60%), Gaps = 18/225 (8%)

Query: 11  MKIVKHALAVCLIMVLASALSILTTAFVVNTYIQSVLASFDIKLDGPEPGIGGFMKSLTG 70
           MK +K  L + L  +L S L+I+TT  VVN YIQSVL+SF+I+L+    G+GG MKS+ G
Sbjct: 1   MKWMKWLLKISLTAILVSTLTIVTTGIVVNAYIQSVLSSFNIQLEAEPMGVGGIMKSMLG 60

Query: 71  MNSKPASDQTEEQKVTAPRDQEKDTSGADGT--VSSDVNGSGKK---------------A 113
           + S    D          R  E+D   AD      ++ NG  K+               +
Sbjct: 61  VGSGTKPDAGSVNAAKGNRQLEEDQGAADDVSEAGTETNGGAKEDEETSSGSTGTSGETS 120

Query: 114 GEEDAPEDALPVMGEASINEEQSGSALDQKLVMTPEAMKDLKNNLPADEKTNIFNILMAK 173
            +E+AP+++LPVMG  +  E    S  DQ++VMTP  + D K+ LP +EK  IF +LM K
Sbjct: 121 NDEEAPDNSLPVMG-TNTTESGDSSLEDQEIVMTPGDIVDRKDRLPTEEKEEIFTMLMNK 179

Query: 174 LPQEEMQKISKAMEDGLTESEVKDLQQVIAKYVDQEEYDTLMKML 218
           LPQ EMQKIS+AMEDGLT +E+ +++Q I+KY++ EE+D L+ ML
Sbjct: 180 LPQSEMQKISEAMEDGLTAAELAEIEQGISKYLNPEEFDKLITML 224


>B1DC43.1 B1DC43_9BACL Putative uncharacterized protein
          Length = 224

 Score = 95.5 bits (236), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/226 (29%), Positives = 114/226 (50%), Gaps = 28/226 (12%)

Query: 14  VKHALAVCLIM---VLASALSILTTAFVVNTYIQSVLASFDIKLDGPEPGIGGFMKSLTG 70
           +K A+ +  I+   ++ S LSI TT ++VN+Y+Q++L  +++ L+     + G    L G
Sbjct: 3   LKAAVWIAKIVAAGLIVSFLSIWTTGYIVNSYVQTLLKQYNLPLEVQPMALSGVWGKLWG 62

Query: 71  M------------------NSKPASDQTEEQKVTAPRDQEKDTSGADGTVSSDVNGSGKK 112
                                K A D   EQ  TAP     D     GT +     SG  
Sbjct: 63  AEEPVQTEDTEKTGTDGADGDKVAVDAFAEQPSTAPL---TDIGIGGGTKAE----SGTS 115

Query: 113 AGEEDAPEDALPVMGEASINEEQSGSALDQKLVMTPEAMKDLKNNLPADEKTNIFNILMA 172
              E+A        G +  +++++ S    +  +T E M ++K  +   +K  +F +LM+
Sbjct: 116 GQSEEAGTSTGQTEGSSQTDDDEAPSIDGTETAITTEDMNNMKGQMSEADKDQLFGLLMS 175

Query: 173 KLPQEEMQKISKAMEDGLTESEVKDLQQVIAKYVDQEEYDTLMKML 218
           KLPQE MQ IS  ME+GLT+ E+  +QQ++A+Y+D+++Y+ +M +L
Sbjct: 176 KLPQEAMQTISGYMENGLTDEELTQIQQLMAQYLDRDQYEQMMAIL 221


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.308    0.125    0.331 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,259,306,197
Number of extensions: 50379401
Number of successful extensions: 190969
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 190968
Number of HSP's successfully gapped: 2
Length of query: 228
Length of database: 3,060,696,203
Length adjustment: 131
Effective length of query: 97
Effective length of database: 1,826,543,238
Effective search space: 177174694086
Effective search space used: 177174694086
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 129 (54.3 bits)