BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0044.0020.p (516 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K8P3.1 B3K8P3_9BACI Peptidase M23B 442 e-122 B1DC44.1 B1DC44_9BACL Peptidase M23B 339 4e-91 C0ZA37.1 C0ZA37_BREBN Putative uncharacterized protein 256 5e-66 B1HPK2.1 B1HPK2_LYSSC Hypothetical metalloprotease yebA EC=3.4.24.- 229 5e-58 A3IAS3.1 A3IAS3_9BACI Membrane protein 226 3e-57 >B3K8P3.1 B3K8P3_9BACI Peptidase M23B Length = 522 Score = 442 bits (1137), Expect = e-122, Method: Compositional matrix adjust. Identities = 239/484 (49%), Positives = 305/484 (63%), Gaps = 17/484 (3%) Query: 44 TKPRRLRRSWIXXXXXXXXXXXXXXXXEKRYVTANTVTYYKVLVKGEEIGKISQETELDQ 103 T PRR WI K YV ANT+ +Y V V G+ IG I ++ +LDQ Sbjct: 44 TSPRR----WIWMSAGVLLIAGSIYTGGKAYVNANTIPFYHVYVDGKSIGTIQEDAQLDQ 99 Query: 104 LFEQKRKEYQVKYPESVMVLQTDGITTEAERAFKPQIDSRKTLDKLDGMLKAYAVGVQLT 163 L + K+KEYQ KYP+ MVL TDGITT+A+R++KP ++S +TL KLDGMLKAYA GV+L Sbjct: 100 LLKAKQKEYQEKYPDVPMVLHTDGITTKADRSYKPVVNSEETLHKLDGMLKAYARGVELK 159 Query: 164 VDGEVLGTVKDQETAAAVLKGVKEHYLPQA--EASTGARLXXXXXXXXXXXXNTGADTIE 221 VDG+ + VKDQ+TA A ++ K + P A + T A +E Sbjct: 160 VDGKTVAIVKDQQTAKAAVEAAKLKFAPAAAQKEKTQRVAFTRTSASASSKKKDDASGLE 219 Query: 222 SAAIREKVSIVPVKADPNKVLSVDEAVKALTEGKEEPLTYTVQEGDTISGIAKLYDTTQA 281 S I+EK+S+ KADPNKVL V+EAVK LT K++P+ YTV+EGDTIS IA+ + A Sbjct: 220 SVDIKEKISLANTKADPNKVLDVEEAVKVLTGTKDKPVVYTVKEGDTISSIAQHFGMKSA 279 Query: 282 EIFKNNPTVKELTLQIGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVRTSDQLTAGKS 341 ++ NP ++E +QIG IVR S +L GK Sbjct: 280 DVMALNPGLEEKYVQIGAELQVTKPEAPLTVRTVETVSVKQPSKPETIVRKSSELALGKR 339 Query: 342 KVVRPGQTGLKTMQYRLTKENGQVVKEEWLGQTVVQASLPEVVYRGTKVVG--------- 392 KVVRPG+ G+KT+ Y +TKENG+V+ ++W GQ VVQ SLPEVVY+GTKV Sbjct: 340 KVVRPGRDGVKTVDYIVTKENGKVISKQWTGQEVVQESLPEVVYKGTKVAPKKKAAAVTQ 399 Query: 393 -EGTGMFAWPVSGATISSSYGERWGRVHKGVDLVSGNRTIKAADAGTVSFAGVQNGYGNV 451 MFAWPVSGA I+SS+G RWGR H+G+D+V G+ TI AA +G V FAG Q+GYGNV Sbjct: 400 KSSGSMFAWPVSGARITSSFGHRWGRSHEGIDMVGGS-TIMAAASGRVVFAGQQSGYGNV 458 Query: 452 VIVDHHNGYITYYGHLSRISVSQGQRLEQGSPIGIMGSTGRSTGTHLHFEIRKNGTAINP 511 VIVDH NGY T YGH+S+ISV GQ + QGS +G+MG+TGRSTGTHLHFE++KNG A NP Sbjct: 459 VIVDHGNGYRTLYGHMSKISVGNGQSVGQGSKLGVMGNTGRSTGTHLHFEVQKNGVAQNP 518 Query: 512 MKYL 515 MKYL Sbjct: 519 MKYL 522 >B1DC44.1 B1DC44_9BACL Peptidase M23B Length = 518 Score = 339 bits (870), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 185/448 (41%), Positives = 259/448 (57%), Gaps = 7/448 (1%) Query: 74 YVTANTVTYYKVLVKGEEIGKISQETELDQLFEQKRKEYQVKYPESVMVLQTDGITTEAE 133 YV ANTV YY V G +G IS E++QL +Q+ ++ + PE MVL IT E Sbjct: 72 YVQANTVDYYNVYKDGNMVGSISDPAEVEQLIQQQTEDVKKANPELSMVLDAGEITYSGE 131 Query: 134 RAFKPQIDSRKTLDKLDGMLKAYAVGVQLTVDGEVLGTVKDQETAAAVLKGVKEHYLPQA 193 FK ++ +TL KL G+L ++A GV+L +DG+V G VKDQETA A+L V+ Y PQ Sbjct: 132 SGFKADPETEETLSKLKGLLSSHAEGVELVIDGKVAGVVKDQETADAILNRVQSKYAPQL 191 Query: 194 EASTGAR-----LXXXXXXXXXXXXNTGADTIESAAIREKVSIVPVKADPNKVLSVDEAV 248 A+ ++ + + E+V V+ DPNK++ +E Sbjct: 192 AAAKKQNEVKTLSYSKTEAEKKKTESSSGNKLTGVKFVEEVKTDEVEVDPNKIMDANELY 251 Query: 249 KALTEGKEEPLTYTVQEGDTISGIAKLYDTTQAEIFKNNPTVKELTLQIGDXXXXXXXXX 308 L +G +P YTVQ+GD I IA ++ ++ I+ NN +++ ++ GD Sbjct: 252 LKLVKGSVKPTKYTVQKGDCIGCIATKFNISEQVIYDNNGWIEQDMIKEGDVLDLTVLQP 311 Query: 309 XXXXXXXXXXXXXXXXXXXXIVRTSDQLTAGKSKVVRPGQTGLKTMQYRLTKENGQVVKE 368 +R SD + G+SKV+ G++G KT+ YR+ K+NG+VV E Sbjct: 312 ELTVKTEERQSETITYDAPLEIRKSDSMKLGESKVLTEGKSGKKTLTYRVVKQNGKVVTE 371 Query: 369 EWLGQTVVQASLPEVVYRGTKVV-GEGTGMFAWPVSGATISSSYGERWGRVHKGVDLVSG 427 E + VV + EV+ RGTKV+ GEGTG FA PVSG ++SS +G+RWGR+HKG+D+ +G Sbjct: 372 ELVDSQVVMKPVAEVIIRGTKVILGEGTGHFASPVSGWSLSSKFGQRWGRMHKGIDM-TG 430 Query: 428 NRTIKAADAGTVSFAGVQNGYGNVVIVDHHNGYITYYGHLSRISVSQGQRLEQGSPIGIM 487 +TI AAD G + F G + GYGN +IV+H NGY T YGHL I V +GQ +E+G +GIM Sbjct: 431 GKTIMAADNGVIEFVGQKTGYGNCIIVNHKNGYKTLYGHLKSIGVKKGQIVEKGDSLGIM 490 Query: 488 GSTGRSTGTHLHFEIRKNGTAINPMKYL 515 GSTG STG HLHFEI KNG NP+KYL Sbjct: 491 GSTGESTGVHLHFEITKNGVLQNPLKYL 518 >C0ZA37.1 C0ZA37_BREBN Putative uncharacterized protein Length = 498 Score = 256 bits (653), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 159/445 (35%), Positives = 242/445 (54%), Gaps = 11/445 (2%) Query: 74 YVTANTVTYYKVLVKGEEIGKISQETELDQLFEQKRKEYQVKYPESVMVLQTDGITTEAE 133 Y T+N + Y V V G+EIG ++ + K +E + K ++ + D IT E E Sbjct: 63 YYTSNVNSVYHVSVNGKEIGVVNDPNVIHNWTVAKLEEEKAKTGLNLQL--ADYITFEEE 120 Query: 134 RAFKPQIDSRKTLDKLDGMLKAYAVGVQLTVDGEVLGTVKDQETAAAVLKGVKEHYLPQA 193 R FK ++ + L + GV+LT+DG+V+G + DQ++A VL VK+ Y Sbjct: 121 REFKAPFNNDAAVQALASVADIKVQGVKLTIDGKVVGYMPDQQSADQVLAEVKQKY-SGV 179 Query: 194 EASTGARLXXXXXXXXXXXXNTGADTIESAAIREKVSIVPVKADPNKVLSVDEAVKALTE 253 A+TG + N ++ A +E V + D +++LS ++ + L + Sbjct: 180 PATTGNKAVVAAASTVPVKPNP----VKEVAFKENVEMQTETVDASQILSAEKLEELLVK 235 Query: 254 GKEEPLTYTVQEGDTISGIAKLYDTTQAEIFKNNPTVKELT-LQIGDXXXXXXXXXXXXX 312 G + + +TV EGD I IAK Y T +I+ NNP V E T L++G Sbjct: 236 GTFKDMKHTVVEGDCIGCIAKKYGITSKDIYANNPGVTENTVLKLGQEINVTAVRPLVTV 295 Query: 313 XXXXXXXXXXXXXXXXIVRTSDQLTAGKSKVVRPGQTGLKTMQYRLTKENGQVVKEEWLG 372 ++ +D++ G++KVV+ G+ G KT++Y + KENGQVV + + Sbjct: 296 QVKEEVDQQEVIAFNTQIKNNDKVPKGETKVVQEGKNGSKTVKYEVVKENGQVVNRKVIK 355 Query: 373 QTVVQASLPEVVYRGTKVV-GEGTGMFAWPVSGATISSSYGERWGRVHKGVDLVSGNRTI 431 Q V + +++ RGTKV+ GTG +WP SG ISS +G+RWG +HKG+D ++G ++ Sbjct: 356 QDVTVQPVTQIMERGTKVIPSRGTGRLSWPASG-YISSGFGQRWGSMHKGID-IAGAGSV 413 Query: 432 KAADAGTVSFAGVQNGYGNVVIVDHHNGYITYYGHLSRISVSQGQRLEQGSPIGIMGSTG 491 AAD G V+FAG YG VI+DH NG T YGH+S I+V G + QG IG+ GSTG Sbjct: 414 MAADNGRVTFAGWNGDYGKSVIIDHGNGMKTLYGHMSVINVKAGDVVSQGKKIGVKGSTG 473 Query: 492 RSTGTHLHFEIRKNGTAINPMKYLQ 516 +STG HLHFE+ +NG NP++YL+ Sbjct: 474 QSTGVHLHFEVLQNGRNQNPIRYLK 498 >B1HPK2.1 B1HPK2_LYSSC Hypothetical metalloprotease yebA EC=3.4.24.- Length = 493 Score = 229 bits (584), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 146/447 (32%), Positives = 221/447 (49%), Gaps = 6/447 (1%) Query: 72 KRYVTANTVTYYKVLVKGEEIGKISQETELDQLFEQKRKEYQVKYPESVMVLQTDGITTE 131 K + N Y V V + IG +S E + ++ K KE ++ E + + + Sbjct: 48 KEHTKENLNKIYHVYVGEDYIGAVSNENAIQEIITSKEKEASQQFKE-LSIDARSSVKII 106 Query: 132 AERAFKPQIDSRKTLDKLDGMLKAYAVGVQLTVDGEVLGTVKDQETAAAVLKGVKEHYLP 191 E+ F + +TL KL L A + L V+ + + ++K+ E ++ +K Y+ Sbjct: 107 PEQVFTNETKDAETLSKLKQSLVAKSDAFTLLVNHKPVVSLKNTEAYEKTVQLLKLQYIS 166 Query: 192 QAEASTGARLXXXXXXXXXXXXNTGADTIESAAIREKVSIVPVKADPNKVLSVDEAVKAL 251 Q E + G + + +++VS + K P ++L+ ++AV L Sbjct: 167 QQELDKLTK--NQQSTINLPELQAGESRLLDISFKQEVSGISQKVTPTQILTPEQAVNYL 224 Query: 252 TEGKEEPLTYTVQEGDTISGIAKLYDTTQAEIFKNNPTVK-ELTLQIGDXXXXXXXXXXX 310 G E +Y +Q GD + +AK ++ T +E+ NP V E LQ+G Sbjct: 225 MTGFLEQDSYKIQSGDVLGSVAKKHNLTTSELLALNPDVTVETVLQVGQELNVTVAKPFV 284 Query: 311 XXXXXXXXXXXXXXXXXXIVRTSDQLTAGKSKVVRPGQTGLKTMQYRLTKENGQVVKEEW 370 +V + G+ V + G G K Y LT ENG+ + Sbjct: 285 NLEVKKKKKVADVIPFKKVVEEDPTMYKGEKVVKQEGANGKKETTYALTSENGKQTSKVA 344 Query: 371 LGQTVVQASLPEVVYRGTKVVGE-GTGMFAWPVSGATISSSYGERWGRVHKGVDLV-SGN 428 L +T+VQ + ++ GTKV+ GTG F+WP G ISS GERWG H+G+D+ N Sbjct: 345 LEETIVQEPVDQIEVVGTKVISSRGTGEFSWPAVGGYISSGMGERWGAFHRGIDIARPSN 404 Query: 429 RTIKAADAGTVSFAGVQNGYGNVVIVDHHNGYITYYGHLSRISVSQGQRLEQGSPIGIMG 488 I AAD G VS AG YGN ++++H+NGY T YGHLS I+V GQ +E+GS IGIMG Sbjct: 405 YNILAADNGVVSAAGTSGTYGNRIVINHNNGYTTLYGHLSSINVEVGQVVEKGSVIGIMG 464 Query: 489 STGRSTGTHLHFEIRKNGTAINPMKYL 515 STG STGTHLHFE+ KNG+ +NP+ Y+ Sbjct: 465 STGNSTGTHLHFEVEKNGSLVNPLSYV 491 >A3IAS3.1 A3IAS3_9BACI Membrane protein Length = 508 Score = 226 bits (577), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 145/447 (32%), Positives = 219/447 (48%), Gaps = 6/447 (1%) Query: 72 KRYVTANTVTYYKVLVKGEEIGKISQETELDQLFEQKRKEYQVKYPESVMVLQTDGITTE 131 K + N Y V V + IG +S E + ++ K KE ++ E M + + Sbjct: 63 KEHTKENLNKIYHVYVGNDYIGAVSDEKAIQEVITSKEKEASQQFKELSMD-ASSSVKII 121 Query: 132 AERAFKPQIDSRKTLDKLDGMLKAYAVGVQLTVDGEVLGTVKDQETAAAVLKGVKEHYLP 191 E+ F + +TL KL L A + L V+ + + ++K+ E ++ +K Y+ Sbjct: 122 PEQVFTNETKDAETLSKLKQSLVAKSDAFTLLVNHKPVVSLKNTEAYEKTVQLLKLQYIS 181 Query: 192 QAEASTGARLXXXXXXXXXXXXNTGADTIESAAIREKVSIVPVKADPNKVLSVDEAVKAL 251 Q E A+ G + + ++ VS + K P ++L+ ++AV L Sbjct: 182 QPELDKLAK--NQQSTINLPELQAGESRLLDISFKQDVSGISQKVTPTQILTPEQAVNYL 239 Query: 252 TEGKEEPLTYTVQEGDTISGIAKLYDTTQAEIFKNNPTVK-ELTLQIGDXXXXXXXXXXX 310 G E +Y +Q GD + +AK ++ T +E+ NP V + LQ+G Sbjct: 240 MTGYLEQDSYKIQSGDVLGSVAKKHNLTTSELLDLNPDVTVDTVLQVGQELNVTVAKPFV 299 Query: 311 XXXXXXXXXXXXXXXXXXIVRTSDQLTAGKSKVVRPGQTGLKTMQYRLTKENGQVVKEEW 370 +V + G+ + + G G K Y LT ENG+ + Sbjct: 300 NLEVKKKKKVADVIPFKKVVEEDPTMYKGEKVIKQEGANGKKETTYALTSENGKQTAKVA 359 Query: 371 LGQTVVQASLPEVVYRGTKVVGE-GTGMFAWPVSGATISSSYGERWGRVHKGVDLV-SGN 428 L + V Q + ++ GTKV+ GTG F+WP G ISS GERWG H+G+D+ N Sbjct: 360 LEEKVTQEPVEQIEVVGTKVISSRGTGEFSWPAVGGYISSGMGERWGAFHRGIDIARPSN 419 Query: 429 RTIKAADAGTVSFAGVQNGYGNVVIVDHHNGYITYYGHLSRISVSQGQRLEQGSPIGIMG 488 I AAD G VS AG YGN ++++H+NGY T YGHLS I+V GQ +E+GS IGIMG Sbjct: 420 YNILAADNGVVSAAGTSGTYGNRIVINHNNGYTTLYGHLSSINVEVGQVVEKGSVIGIMG 479 Query: 489 STGRSTGTHLHFEIRKNGTAINPMKYL 515 STG STGTHLHFE+ KNG+ +NP+ Y+ Sbjct: 480 STGNSTGTHLHFEVEKNGSLVNPLSYV 506 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.313 0.131 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,525,695,176 Number of extensions: 96499965 Number of successful extensions: 267037 Number of sequences better than 1.0e-05: 4669 Number of HSP's gapped: 264739 Number of HSP's successfully gapped: 4669 Length of query: 516 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 376 Effective length of database: 1,741,754,103 Effective search space: 654899542728 Effective search space used: 654899542728 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 134 (56.2 bits)