BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0044.0017.p (430 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K8N9.1 B3K8N9_9BACI YycH family protein 523 e-146 B1DC47.1 B1DC47_9BACL Putative uncharacterized protein 198 9e-49 C0ZA34.1 C0ZA34_BREBN Probable two-component system regulatory p... 127 2e-27 B1DC48.1 B1DC48_9BACL Putative uncharacterized protein 92 7e-17 C5D9W6.1 C5D9W6_9BACI YycH family protein 83 5e-14 >B3K8N9.1 B3K8N9_9BACI YycH family protein Length = 424 Score = 523 bits (1346), Expect = e-146, Method: Compositional matrix adjust. Identities = 258/429 (60%), Positives = 332/429 (77%), Gaps = 6/429 (1%) Query: 1 MKEKVKSWILTLLVFGSLVESYYLIYRLPGSDSAVMSENLYVKTDNMGPEEKVENLLYPD 60 MKE++K+ +L LLV GSLV+SY LI+R PGSDS V S++ Y++T+ MGPEEK ENLL+PD Sbjct: 1 MKERLKTVLLVLLVVGSLVQSYVLIFRFPGSDSVVQSKDAYIRTEEMGPEEKPENLLFPD 60 Query: 61 KMIIHMGQSKHTLFYPNTTFYNLILNRLKGRGFESFQRRSVQDFDWNKIRNENPGIELSF 120 KM+IH+G+ KHT+FYPN TFYNL+ NRLKGR F++FQRR V + DW K+R+EN GIELSF Sbjct: 61 KMVIHLGEDKHTVFYPNDTFYNLVYNRLKGRTFDNFQRRMVSNIDWAKVRSENRGIELSF 120 Query: 121 GSGIPVTLLQRVMQLSPDSLFEGESIDRIWIYNIKNDSKAHAVFFSTRGDIVYEAAKADL 180 SGIPVTLLQRVMQ+ PD+LFEGESI+++W+Y+++ ++K H +FFST GD+VYEAA+ADL Sbjct: 121 DSGIPVTLLQRVMQIVPDTLFEGESINKMWLYSVEGEAKIHVMFFSTEGDVVYEAAQADL 180 Query: 181 TVQDVQQHVDFGSDLTNYKAVNGDYYVPAAKVSMVEVEMPLGMYTIQQMQSNLFFDAGST 240 TVQDV Q VDFG T YK V+G YY P +++MV +E+P+G YT+ QMQ +LFFD T Sbjct: 181 TVQDVDQLVDFGLSWTPYKMVDGRYYTPEKELNMVSIELPIGEYTVDQMQRSLFFDPSIT 240 Query: 241 RYIPEKDGSEIYTDSKRSLQVDQEQNWMSYSDPAALPAGESTPAKDALEAVDFVNEHGGW 300 R I EKDGSEIYTDSKRSLQVDQ Q W+SY+DPAA P+GES+P KD L A+DFVN+HGGW Sbjct: 241 RNIREKDGSEIYTDSKRSLQVDQGQKWISYTDPAAPPSGESSPGKDVLSAIDFVNQHGGW 300 Query: 301 NGTYRLAATEEGRQERKVSFQQFYGSSPYGSYPIISQPQLQYGVINLELQQGTVSSYERS 360 NGTYRLA E V FQQ+ YG +PI++ QYGV+ L+LQQGTV+SYERS Sbjct: 301 NGTYRLAKAGESEDRTLVKFQQY-----YGGFPILNTSGFQYGVMELDLQQGTVTSYERS 355 Query: 361 LMFVDETKAVKRIVDLSFGERLENQLARLSQASVVKELTPAYVPEVQGEKLRLIPVWRVT 420 L++++ K++V L+ GE LE +L + + SVV L PAY+P + GE L L PVW + Sbjct: 356 LLYLEPASLKKQMVKLTGGEALEAKL-KPYEESVVTGLDPAYLPVLTGEGLLLKPVWALK 414 Query: 421 LNDGTVLTL 429 L +G+V+ L Sbjct: 415 LQNGSVVIL 423 >B1DC47.1 B1DC47_9BACL Putative uncharacterized protein Length = 267 Score = 198 bits (503), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 98/268 (36%), Positives = 160/268 (59%), Gaps = 11/268 (4%) Query: 1 MKEKVKSWILTLLVFGSLVESYYLIYRLPGSDSAVMSENLYVKTDNMGPEEKVENLLYPD 60 M EK K+ +L +LV SL++SY+L Y +PG + V + Y+ D +G + EN+++P+ Sbjct: 1 MMEKAKTLLLVMLVALSLIQSYFLAYSMPGLGATVKTGQDYINADPLGKKSNAENVIFPE 60 Query: 61 KMIIHMGQSKHTLFYPNTTFYNLIL-NRLKGRGFESFQRRSVQDFDWNKIRNENPGIELS 119 ++++H G ++HT+ YP TTFYN+IL +R++GR F+ FQR +W+++R + G+EL Sbjct: 61 EIVLHFGDNEHTVLYPGTTFYNMILKDRIQGREFKGFQRNPANVLNWDEVRKNDIGVELR 120 Query: 120 FGSGIPVTLLQRVMQLSPDSLFEGESIDRIWIYNIKNDSKAHAVFFSTRGDIVYEAAKAD 179 F +GIPV LL++++++ D LF GE IDRIWI+ + + FFS G VYE+ +AD Sbjct: 121 FQNGIPVELLKKLLKVQGDLLFLGEMIDRIWIFKATDSEEVRTFFFSADGQKVYESTQAD 180 Query: 180 LTVQDVQQHVDFGSDLTNYKAVNGDYYVPAAKVSMVEV------EMPLGMYTI--QQMQS 231 LTV+DVQ +V FG Y+ + Y+P + VE+ +P+ I + Q Sbjct: 181 LTVRDVQDYVGFGEYQPKYQMTSDGIYLPKQPIQSVEMVFLMRPTLPISCSRIFLTRQQR 240 Query: 232 NLFFDAGSTRYIPEKDGSEIYTDSKRSL 259 F + R+I + S +Y S+R+ Sbjct: 241 RCFMTVAARRFI--RMASVVYRSSRRAC 266 >C0ZA34.1 C0ZA34_BREBN Probable two-component system regulatory protein Length = 460 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 112/453 (24%), Positives = 210/453 (46%), Gaps = 33/453 (7%) Query: 1 MKEKVKSWILTLLVFGSLVESYYLIYRLPGSDSAVMSENLYVKTDNMGPEEKVENLLYPD 60 M E K+ +L LLV S V + L P +E Y ++ + E+++E L+ P+ Sbjct: 4 MLEPAKTVLLNLLVLASFVLTAMLWSNQPNLQFIEPAE--YTQSKPVQ-EKQLEQLVTPE 60 Query: 61 KMIIHMGQSKHTLFYPNTTFYNLILNRLKGRGFESFQRRSVQDFDWNKIRNENPGIELSF 120 ++ H G+ +HT Y+LI+ + F F ++ + W I E G+E+ F Sbjct: 61 SVVFHYGEDRHTKASATDAPYSLIVREMSKWIFLDFSPLTISNEKWEDIAREKMGLEVRF 120 Query: 121 GSGIPVTLLQRVMQLSPDSLFEGESIDRIWIYNIKNDSKAHAVFFSTRGDIVYEA----- 175 S +P++++ R++ + + IDR+W+Y K++ +A+F ST + + Sbjct: 121 RSTVPLSIVGRLVTFRDEFDNRMKGIDRLWLYYEKDEDVVYALFLSTEEGRMMRSRTSIS 180 Query: 176 ---------AKADLTVQDVQQHVDFGS---DLTNYKAVNGDYYVPAAKVSMVEVEMPLGM 223 A DL + + + V DL + YY+P ++ M + Sbjct: 181 PKDLRESYLASGDLMPEQIMKIVKPERSFVDLEGSALMWSTYYLPKNQMRMQQFRYSYVP 240 Query: 224 YTIQQMQSNLFFDAGSTRYIPEKDGSEIYTDSKRSLQVDQEQNWMSYSDPAALPAGESTP 283 T ++ + F D R I E+D + I+TD RS+Q+ EQ +++DPA + Sbjct: 241 VTNDRLIESYFIDQSLVRQIMERDKTVIFTDGSRSIQLRSEQKAFTFTDPAYQQRDQQLS 300 Query: 284 AKDALE-AVDFVNEHGGWNGTYRLAATEEGRQERK-VSFQQFYGSSPYGSYPIISQPQL- 340 ++ ++ AV F+N+H GW Y ++ E+ ++F+Q+ G+YP+IS+ + Sbjct: 301 DEEKVQSAVTFMNKHLGWLDEYHFERIKKSYNEKDLITFRQY-----VGAYPLISEGEAK 355 Query: 341 QYGVINLELQQGTVSSYERSLMFVDETKAVKRIVDLSFGERLENQLARLSQASVVKELTP 400 Q I + + G V + RSL+ +D+ K +S E Q R + + +++T Sbjct: 356 QIDTIQMTSEAGQVVTMSRSLLDLDKYIDNKEWTIMSGPELY--QYIRDKKLADTEKITN 413 Query: 401 AYVP---EVQGEKLRLIPVWRVTLNDGTVLTLN 430 AY+ +V + L+P+W V L + L ++ Sbjct: 414 AYLAYHTKVGEGNVDLMPIWVVELANQASLYIS 446 >B1DC48.1 B1DC48_9BACL Putative uncharacterized protein Length = 228 Score = 92.4 bits (228), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 87/166 (52%), Gaps = 9/166 (5%) Query: 268 MSYSDPAALPAGESTPAKDALEAVDFVNEHGGWNGTYRL---AATEEGRQERKVSFQQFY 324 M Y++PAA + E+ +++ +++F+N+HGGW+G R EG+ + FQQ+ Sbjct: 1 MIYTNPAASQSEENPLSENVFASIEFINQHGGWDGLNRFVNPGLNLEGKTGKYAEFQQYV 60 Query: 325 GSSPYGSYPIISQPQLQYGVINLELQQGTVSSYERSLMFVDETKAVKRIVDLSFGERLEN 384 + YP+I+ +YG + L LQQG V+ Y RSL+ + + L G +L N Sbjct: 61 DN-----YPVIATKDFEYGSMRLTLQQGVVTEYSRSLITLANRAKTREARWLPGGAQLRN 115 Query: 385 QLARLSQASVVKELTPAYVPE-VQGEKLRLIPVWRVTLNDGTVLTL 429 L + S V L PA E ++ +L+ +P+W V L DGT L Sbjct: 116 ALDHYDRRSEVVRLFPALKAEPLENNELKFVPIWAVQLEDGTQEAL 161 >C5D9W6.1 C5D9W6_9BACI YycH family protein Length = 449 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 93/359 (25%), Positives = 151/359 (42%), Gaps = 43/359 (11%) Query: 1 MKEKVKSWILTLLVFGSLVESYYLIYRLPGSDSAVMSENLYVKTDNMGPEEKVENLLYPD 60 M E K+ +LT LV S+V ++ L P D V+ + YV+ + V N Sbjct: 1 MYEAAKTVVLTFLVSVSIVLTFVLWTYHPKYD--VLQNDEYVQNVS------VSNTQVDP 52 Query: 61 KMIIHMGQSKHTLFYPNTTFYNLILNRLKGRGFESFQRRSVQDFD----------WNKIR 110 MI+ Q LF+ N Y ++ + + ++ S+ DF+ + Sbjct: 53 AMIV---QPSQLLFHKNNAHYGIVQEEEANQILKEIKKWSIDDFENISDTIPKGKFLSFL 109 Query: 111 NENPGIELSFGSGIPVTLLQRVMQLSPDSLFEGESIDRIWIYNIKNDSKAHAVFFSTRGD 170 +E +EL + IP+ + + + Q+ D + S DRI I + N + F ST Sbjct: 110 HEKERLELVYPDSIPIDVYRSIFQIE-DKGIKHISFDRI-IIPLANKDELSIYFISTEKR 167 Query: 171 IVYEAAKADLTVQDVQQHVDFGSDLTNYK-----AVN--GDYYVPAAKVSMVEVEMPLGM 223 VY+A D+++ ++ + +L Y +N ++P +V+M ++ Sbjct: 168 RVYKAIATDVSLSEINK---LAMELDEYPRYFPYVINETKQIFLPEKEVTMNRLQYYTDE 224 Query: 224 YTIQQMQSNLFFDAGSTRYIPEKDGSEIYTDSKRSLQVDQEQNWMSYSDPAALPA-GEST 282 + + LF D + G E YTD R + VD Q + Y +PAA G Sbjct: 225 LDSDKFKEALFSDPSFVKKDLITFGEE-YTDGSRLMDVDFLQRMLLYVNPAARTLNGSEN 283 Query: 283 PAKDAL--EAVDFVNEHGGWNGTYRLAATEEGRQERKVSFQQFYGSSP----YGSYPII 335 D L +++DFVNEHGGW YR A E ER V F+ + P YG I+ Sbjct: 284 QKNDHLIQKSIDFVNEHGGWTDMYRFARWNED--ERTVVFRLIVNNHPVFNEYGMSEIV 340 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.133 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,567,667,332 Number of extensions: 107093102 Number of successful extensions: 252758 Number of sequences better than 1.0e-05: 77 Number of HSP's gapped: 252710 Number of HSP's successfully gapped: 77 Length of query: 430 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 291 Effective length of database: 1,751,175,118 Effective search space: 509591959338 Effective search space used: 509591959338 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)