BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0044.0016.p (246 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K8N8.1 B3K8N8_9BACI Putative uncharacterized protein 282 2e-74 B1DC49.1 B1DC49_9BACL Putative uncharacterized protein 202 2e-50 A4ITU5.1 A4ITU5_GEOTN Putative uncharacterized protein 61 8e-08 B4BPH6.1 B4BPH6_9BACI Putative uncharacterized protein 61 8e-08 C4L018.1 C4L018_EXISA Putative uncharacterized protein 61 1e-07 >B3K8N8.1 B3K8N8_9BACI Putative uncharacterized protein Length = 249 Score = 282 bits (721), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 139/245 (56%), Positives = 177/245 (72%), Gaps = 2/245 (0%) Query: 1 MDWGRAKNVLIYAFLVLNLLLCYQLWIDLRDQASANLDFTSLSQDTQAVMEQKDIRVLCP 60 MDWGRAKNVLIYAFL+LNL+L YQLW+D R+Q +NLDFTSLS+ TQ VME+ I++L P Sbjct: 1 MDWGRAKNVLIYAFLLLNLVLGYQLWMDYREQVGSNLDFTSLSESTQQVMEENGIQLLSP 60 Query: 61 IPAATPQLPDITYHYSGEEQNEPPVELKEPVDSKLIYSSFTELSTALQGQIPDIANYRFD 120 IP TPQLP I Y YS E Q E PV L++PVD+KLIY+ EL AL+G+I D+ NYR D Sbjct: 61 IPTETPQLPKINYIYSAEAQGE-PVGLEQPVDTKLIYADEKELRNALEGKIADLGNYRHD 119 Query: 121 SQESEVGKFVLHPLVDKKWSLFRVRLELINSDQKIIAYRWPKIEIGAGSSDNVQKVLPAS 180 + F+ PLV K+W LF V LE I+ QKI A+R P EI S QKVLPAS Sbjct: 120 EPSDKENVFIFRPLVQKEWPLFNVELEFIHEAQKIHAFREPVFEILPSSDMEEQKVLPAS 179 Query: 181 QALSSLIEKYF-PENSVVKEIELGYYGELFNSESQVASPMWRFMLENGNAYYVDAISADI 239 +AL +LIE+ F P +S V++I+LGYYG+LFN+E Q+A+P WRF L++G YV IS D+ Sbjct: 180 KALETLIERNFIPPDSAVRDIQLGYYGQLFNTEDQLAAPTWRFTLDHGEMIYVQGISGDV 239 Query: 240 ISPKT 244 ++PK+ Sbjct: 240 LTPKS 244 >B1DC49.1 B1DC49_9BACL Putative uncharacterized protein Length = 251 Score = 202 bits (514), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 101/244 (41%), Positives = 161/244 (65%), Gaps = 3/244 (1%) Query: 1 MDWGRAKNVLIYAFLVLNLLLCYQLWIDLRDQASANLDFTSLSQDTQAVMEQKDIRVLCP 60 MDWGRAK+VLI +FL+LN+LL YQ+W ++ +Q +AN + L +T A M+QK I + Sbjct: 1 MDWGRAKSVLIISFLLLNILLGYQVWSNIGEQLNANKNTAELPSETYAFMKQKGIELSAN 60 Query: 61 IPAATPQLPDITYHY-SGEEQNEPPVELKEPVDSKLIYSSFTELSTALQGQIPDIANYRF 119 +P TP+L D+TY SG + P +L+ PVDS++I+S +L L QI D+ Y+F Sbjct: 61 LPVETPKLRDLTYMLRSGNLEGLPETKLETPVDSRIIFSE-KDLVKTLGSQIVDLDKYKF 119 Query: 120 DSQESEVGKFVLHPLVDKKWSLFRVRLELINSDQKIIAYRWPKIEIGAGSSDNVQKVLPA 179 D + G +VL+ + D + +F V+LEL S+QKI +R ++++ Q VLPA Sbjct: 120 DPAMTRDGVYVLYRMADNR-PMFDVKLELYYSNQKITGFRQVRVDLTGPGEAKEQTVLPA 178 Query: 180 SQALSSLIEKYFPENSVVKEIELGYYGELFNSESQVASPMWRFMLENGNAYYVDAISADI 239 S+A++ IE+ PE +V+ +I+LGY+G++F++E+QVA+P +R +LE+GN YY+ AI+ ++ Sbjct: 179 SKAMAPFIERNLPEGAVITDIQLGYHGQMFDTETQVAAPYYRVLLEDGNEYYIHAINGEV 238 Query: 240 ISPK 243 K Sbjct: 239 AQVK 242 >A4ITU5.1 A4ITU5_GEOTN Putative uncharacterized protein Length = 260 Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 64/262 (24%), Positives = 111/262 (42%), Gaps = 26/262 (9%) Query: 1 MDWGRAKNVLIYAFLVLNLLLCYQ-------------LWIDLRDQASAN-LDFTSLSQD- 45 MDW + K + I FL+L+ L YQ L + +Q AN + + L ++ Sbjct: 1 MDWSKTKTIFIIVFLILDCFLIYQFMEKRNSSQLDVILETTIEEQLEANGITYVDLPKEV 60 Query: 46 TQAVMEQKDIRVLCPIPAATPQLPDITYHYSGEEQNEPPVELKEPVDSKLIYSSFTELST 105 T+AV R A T +L GE + + PV + +LS Sbjct: 61 TKAVYVSGKSRSFT--SADTKKLSGQKVEIEGETKLKGT--FTHPV--AFNFEDQYQLSE 114 Query: 106 ALQGQIPDIANYRFDSQESEVGKFVLHPLVDKKWSLFRVRLEL---INSDQKIIAYRWPK 162 LQ I + Y F S + + G + + + D K +L +N ++ ++Y Sbjct: 115 FLQRHILNGEQYAFWSFDKKKGTVICYQVYDGKMIYDNENSKLVIHVNEQKEALSYEQTM 174 Query: 163 IEIGAGSSDNVQKVLPASQALSSLIEK-YFPENSVVKEIELGYYGELFNSESQVASPMWR 221 + + + Q V+PA +A+ +L + + V IELGYYG + + SQV +P W Sbjct: 175 L-VDLEKYERKQDVVPAIKAIETLYRRGHLQPGDHVTRIELGYYGLVQFTASQVLTPTWH 233 Query: 222 FMLENGNAYYVDAISADIISPK 243 ++ Y+V+A +I+ + Sbjct: 234 IVVNRKKDYFVNAFEGQVINDQ 255 >B4BPH6.1 B4BPH6_9BACI Putative uncharacterized protein Length = 260 Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 64/262 (24%), Positives = 111/262 (42%), Gaps = 26/262 (9%) Query: 1 MDWGRAKNVLIYAFLVLNLLLCYQ-------------LWIDLRDQASAN-LDFTSLSQD- 45 MDW + K + I FL+L+ L YQ L + +Q AN + + L ++ Sbjct: 1 MDWSKTKTIFIIVFLILDCFLIYQFMEKRNSSQLDVILETTIEEQLEANGITYVDLPKEV 60 Query: 46 TQAVMEQKDIRVLCPIPAATPQLPDITYHYSGEEQNEPPVELKEPVDSKLIYSSFTELST 105 T+AV R A T +L GE + + PV + +LS Sbjct: 61 TKAVYVSGKSRSFT--SADTKKLSGQKVEIEGETKLKGT--FTHPV--AFNFEDQYQLSE 114 Query: 106 ALQGQIPDIANYRFDSQESEVGKFVLHPLVDKKWSLFRVRLEL---INSDQKIIAYRWPK 162 LQ I + Y F S + + G + + + D K +L +N ++ ++Y Sbjct: 115 FLQRHILNGEQYAFWSFDKKKGTVICYQVYDGKMIYDNENSKLVIHVNEQKEALSYEQTM 174 Query: 163 IEIGAGSSDNVQKVLPASQALSSLIEK-YFPENSVVKEIELGYYGELFNSESQVASPMWR 221 + + + Q V+PA +A+ +L + + V IELGYYG + + SQV +P W Sbjct: 175 L-VDLEKYERKQDVVPAIKAIETLYRRGHLQPGDHVTRIELGYYGLVQFTASQVLTPTWH 233 Query: 222 FMLENGNAYYVDAISADIISPK 243 ++ Y+V+A +I+ + Sbjct: 234 IVVNRKKDYFVNAFEGQVINDQ 255 >C4L018.1 C4L018_EXISA Putative uncharacterized protein Length = 274 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 66/277 (23%), Positives = 124/277 (44%), Gaps = 50/277 (18%) Query: 1 MDWGRAKNVLIYAFLVLNLLLCYQLWIDLRDQASANLDFTSLSQDTQAVMEQKDIRVLCP 60 MDW +AK +LI+AFL LN+ L +QL + D TS++Q +++Q+++ Sbjct: 1 MDWSKAKTILIFAFLALNIYLLFQLLTETWATEVVTNDNTSITQ----ILDQRNVD---- 52 Query: 61 IPAATPQLP-DITYHYSGEEQNEPP--------------------VELKEPV--DSKLIY 97 PA P++ DI Y E+ VELK+PV D+K + Sbjct: 53 -PAKLPRMGRDIGYLTGSSEEMSAAMITKNREAQLATTLDNMQLEVELKQPVPLDAKDLR 111 Query: 98 SSFTELSTALQGQIPDIANYRFDSQESEVG--------KFVLHPLVDKKWSLF---RVRL 146 ++ + + A +R+D + ++ K P V+ ++ + L Sbjct: 112 TTASTFVAEYAPFGNEYAYWRYDEKTRQIAFVQTFEDNKIFSAPEVEGDTEMYIGPSLIL 171 Query: 147 ELINSDQKIIAYRWPKI-EIGAGSSDNVQKVLPASQALSSLI-EKYFPENSVVKEIELGY 204 +N ++ Y+ + ++ + + D++ VL AS+A+S L KYF N ++ I G+ Sbjct: 172 IQLNESFEVTDYKQRHLKDLSSKTQDDL--VLTASEAISQLASRKYFQPNQEMRAINTGF 229 Query: 205 YGELFNSESQ--VASPMWRFMLENGNAYYVDAISADI 239 Y +S + P+W +++ Y+V+AI + Sbjct: 230 YSLPLDSSGSLIIMPPLWSIGIDD-QVYFVNAIDGTV 265 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.134 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,415,094,846 Number of extensions: 55897128 Number of successful extensions: 142085 Number of sequences better than 1.0e-05: 10 Number of HSP's gapped: 142088 Number of HSP's successfully gapped: 10 Length of query: 246 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 114 Effective length of database: 1,817,122,223 Effective search space: 207151933422 Effective search space used: 207151933422 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)