BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0044.0014.p (414 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K8N5.1 B3K8N5_9BACI Peptidase S1 and S6 chymotrypsin/Hap 517 e-145 B1DC52.1 B1DC52_9BACL Peptidase S1 and S6 chymotrypsin/Hap 410 e-112 C0ZA30.1 C0ZA30_BREBN Probable serine protease do-like protein E... 296 3e-78 C1PE69.1 C1PE69_BACCO Peptidase S1 and S6 chymotrypsin/Hap 276 3e-72 Q4ER55.1 Q4ER55_LISMO Serine protease EC=3.4.21.- 268 8e-70 >B3K8N5.1 B3K8N5_9BACI Peptidase S1 and S6 chymotrypsin/Hap Length = 455 Score = 517 bits (1331), Expect = e-145, Method: Compositional matrix adjust. Identities = 275/460 (59%), Positives = 329/460 (71%), Gaps = 51/460 (11%) Query: 1 VGLFDDDFYSTKVSRRRSRMHDASSGSGGHKW-PRRSRRGLATWQVAMICSVVSAVTAVL 59 +GLFDDDFYSTK+SRR + S KW R R+GL+T+Q++ I SV SA+ AV+ Sbjct: 1 MGLFDDDFYSTKISRRSKNTSEDRSER--TKWRSTRRRKGLSTFQISAISSVCSALIAVM 58 Query: 60 LFSLVTGQLTHEKAESPAVI----GKVAASSGDPYDRIIQAAALVRPAVVSIINHKE--- 112 LFS +TG H SP + +++ S GDPY+RII AA VRPAVVS++ HKE Sbjct: 59 LFSFITG---HPATSSPITMINGSHQLSTSDGDPYERIISAAQKVRPAVVSVLTHKETPL 115 Query: 113 --------------------DNKELNIL------------------DESALGSGVIYKKD 134 D + + E ALGSGVI+KK Sbjct: 116 PEEEGIEGEGLEEESGTLPEDEGDFELPEGFDFGDDFDFGEDFGGSQEDALGSGVIFKKL 175 Query: 135 DGKAFIITNNHVIEGAGKLEVVTVNGETRKATLVGADKVSDIAVLSIDAEGIKTVAQIGD 194 +GKAF+ITNNHV+EGA LEVV V GE +KATLVG D VSDIAVLSID++GI VA+ GD Sbjct: 176 EGKAFVITNNHVVEGADSLEVVLVGGEKKKATLVGTDNVSDIAVLSIDSKGIGEVAEFGD 235 Query: 195 SSKLRLGETVIAIGNPLGLGDTLTSGIVSYTERTIPVSLNQDGVYDWEQEVIQTDAAINE 254 SSKLRLGETVIAIGNPLGLGDTLTSGIVSYT R IPVSLNQDG+YDWEQEVIQTDAAINE Sbjct: 236 SSKLRLGETVIAIGNPLGLGDTLTSGIVSYTNRIIPVSLNQDGIYDWEQEVIQTDAAINE 295 Query: 255 GNSGGALVDLNGKVIGINTMKISDTGVEGLGFAIPANHVMETADELAAKGKIARSYLGVY 314 GNSGGALVDLNGKVIGINTMKI+DTGVEGLGFAIP N + E EL KG IAR YLGVY Sbjct: 296 GNSGGALVDLNGKVIGINTMKIADTGVEGLGFAIPVNEITEVVTELMLKGHIARPYLGVY 355 Query: 315 SVDLNNPYVPLAEDQRKELNLPDSVKDGVVVLDAVGPAKVAGLQLNDVITKFDNQSITST 374 +VDL+NPY PL++ ++++L LP +V +GVVVLDA+GPA AGLQLNDVI K D + IT+T Sbjct: 356 TVDLSNPYAPLSKKEKEDLKLPKTVTEGVVVLDALGPALDAGLQLNDVIVKLDGKPITTT 415 Query: 375 LSLRKYLYDHTKIGDELKITFYRNGEVKQVTVKLLEKPEE 414 L LRK+LY +TK+G +L +TFYR+G+++ + VKL EKP E Sbjct: 416 LELRKHLYYNTKVGGDLNVTFYRDGKLQSLKVKLEEKPGE 455 >B1DC52.1 B1DC52_9BACL Peptidase S1 and S6 chymotrypsin/Hap Length = 452 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 222/459 (48%), Positives = 301/459 (65%), Gaps = 53/459 (11%) Query: 1 VGLFDDDFYSTKVSRRRSRMHDASSGSGGHKWPRRSRRGLATW---QVAMICSVVSAVTA 57 +G+FDDDFYSTKVSRR A S S ++ +++G+ W ++A + S SAV A Sbjct: 1 MGIFDDDFYSTKVSRR------ARSTSSKDEFAFSNKKGMRNWSNVRIAFVASFTSAVAA 54 Query: 58 VLLFSLVTGQLTHEKAESPAVIGKVAASSGDPYDRIIQAAALVRPAVVSIINHK------ 111 VLLF LV G A + A+ S R IQA+A VRPAVVS+IN + Sbjct: 55 VLLFVLVFGGGGIGPGSHAASVS--ASGSTSLEQRTIQASAKVRPAVVSVINEQTVPYGL 112 Query: 112 -------------EDNKELNILDESALGSGVIYKKDDGKAFIITNNHVIEGAGKLEVVTV 158 E+ + E +GSGVI+K DGKA+IITN+HVI GA ++V+ V Sbjct: 113 IPGDGAQGQAGSGEEGQIQGSKQEVGVGSGVIFKLKDGKAYIITNHHVIAGAESVKVMLV 172 Query: 159 NGETRKATLVGADKVSDIAVLSIDAEGIKTVAQIGDSSKLRLGETVIAIGNPLGLGDTLT 218 NGE R+A +VG+D+++D+AVL +D + IKTVA+IG SSKL+ E V+AIGNPLGLGD+L+ Sbjct: 173 NGEKREAKIVGSDQITDLAVLEMDGKDIKTVAEIGKSSKLQPAEFVLAIGNPLGLGDSLS 232 Query: 219 SGIVSYTERTIPVSLNQDGVYDWEQEVIQTDAAINEGNSGGALVDLNGKVIGINTMKISD 278 GIVS T R +PVSLN+DGVYDW+QEVIQ + +INEGNSGG L+D++GKV+GIN+MKI++ Sbjct: 233 MGIVSKTHRVVPVSLNEDGVYDWQQEVIQVNVSINEGNSGGPLIDMDGKVVGINSMKIAE 292 Query: 279 TGVEGLGFAIPANHVMETADELAAKGKIARSYLGVYSVDLNNPYVPLAEDQR-------- 330 GVEGLGFAIP ++ M D L KG ++R YLGVY+VDL + ++++ Sbjct: 293 VGVEGLGFAIPIDNAMPIIDSLMEKGYVSRPYLGVYTVDLEQYFAQKQQEEQAAGSNGKT 352 Query: 331 ---------------KELNLPDSVKDGVVVLDAVGPAKVAGLQLNDVITKFDNQSITSTL 375 EL+LPD V +GV+VL+AVGPAK AG++LNDVI K D +SI+ST+ Sbjct: 353 DQGTGAASGSEESELPELSLPDEVLNGVIVLEAVGPAKDAGMKLNDVIVKLDEKSISSTM 412 Query: 376 SLRKYLYDHTKIGDELKITFYRNGEVKQVTVKLLEKPEE 414 LR+YLY IGDE+K+TFYR+G++ + KL EK ++ Sbjct: 413 ELRQYLYQQKHIGDEIKVTFYRDGKLMTASFKLAEKTKD 451 >C0ZA30.1 C0ZA30_BREBN Probable serine protease do-like protein EC=3.4.21.- Length = 411 Score = 296 bits (758), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 169/329 (51%), Positives = 222/329 (67%), Gaps = 11/329 (3%) Query: 94 IQAAALVRPAVVSIIN--HKEDNKELNILD-ESALGSGVIYKKDDGKAFIITNNHVIEGA 150 ++A V A+V +IN + ++ N D E GSGVI++K GKA+I+TN HVI+ A Sbjct: 86 VEAVKQVENAIVGVINIGQRRNSWMQNSTDVEQGQGSGVIFQKKGGKAYIVTNYHVIDKA 145 Query: 151 GKLEVVTVNGETRKATLVGADKVSDIAVLSIDAEGIKTVAQIGDSSKLRLGETVIAIGNP 210 KLEV GE A +VGAD +D+AVL IDA + VA+ GDSS L++GE IAIGNP Sbjct: 146 QKLEVALPTGEKVSAKVVGADGYADLAVLEIDASKVTDVAEFGDSSTLQVGEPAIAIGNP 205 Query: 211 LGL--GDTLTSGIVSYTERTIPVSLNQDGVYDWEQEVIQTDAAINEGNSGGALVDLNGKV 268 LG+ T+T GI+S ER++P+ N+DG DWE +VIQTDAAIN GNSGGALV++ G+V Sbjct: 206 LGMQFSRTVTQGIISSKERSMPMDFNEDGQDDWELDVIQTDAAINPGNSGGALVNIEGQV 265 Query: 269 IGINTMKISDTGVEGLGFAIPANHVMETADELAAKGKIARSYLGVYSVDLNNPYVPLAED 328 IGINT+KIS TGVEGLGFA+P N V D+L KG + RSYLGV +DL N VP E Sbjct: 266 IGINTLKISKTGVEGLGFALPINDVKVIVDQLMEKGTLQRSYLGVQPLDLAN--VPRNE- 322 Query: 329 QRKELNLPDSVKDGVVVLDAVG---PAKVAGLQLNDVITKFDNQSITSTLSLRKYLYDHT 385 ++ LNLPD V+ GVVV VG PA AGL+ DVI K D+++I+++ LRKYL + Sbjct: 323 WKETLNLPDQVQSGVVVQTDVGKFSPAGQAGLRQLDVIVKLDDKNISTSAQLRKYLTMNK 382 Query: 386 KIGDELKITFYRNGEVKQVTVKLLEKPEE 414 K GD + +T+YR+G +K VKL P++ Sbjct: 383 KPGDTMDVTYYRDGLLKTAKVKLTAPPQQ 411 >C1PE69.1 C1PE69_BACCO Peptidase S1 and S6 chymotrypsin/Hap Length = 420 Score = 276 bits (705), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 148/284 (52%), Positives = 198/284 (69%), Gaps = 7/284 (2%) Query: 129 VIYKKDDGKAFIITNNHVIEGAGKLEVVTVNGETRKATLVGADKVSDIAVLSIDAEGIKT 188 +IYKK KA+++TN HVIEGA LEV NG+ A LVG DK +D+AVL ID + T Sbjct: 133 IIYKKAGDKAYVVTNYHVIEGANALEVTLSNGKKLSAKLVGGDKYTDLAVLQIDGSNVTT 192 Query: 189 VAQIGDSSKLRLGETVIAIGNPLG--LGDTLTSGIVSYTERTIPVSLNQDGVYDWEQEVI 246 VAQ GDS L+LGETVIAIGNPLG ++T GIVS RT+PV +++DG DW++EVI Sbjct: 193 VAQFGDSDALKLGETVIAIGNPLGEEFAGSVTEGIVSGLNRTVPVDIDEDGTEDWQEEVI 252 Query: 247 QTDAAINEGNSGGALVDLNGKVIGINTMKISDTGVEGLGFAIPANHVMETADELAAKGKI 306 QTDAAIN GNSGGALV+++G+V+GIN+MKIS+ VEG+GF+IP N +L KGKI Sbjct: 253 QTDAAINPGNSGGALVNISGQVVGINSMKISNESVEGIGFSIPINSAKPVIHQLETKGKI 312 Query: 307 ARSYLGVYSVDLNNPYVPLAEDQRKELNLPDSVKDGVVV--LDAVGPAKVAGLQLNDVIT 364 R LGV V++++ A Q++ L LP +V GVV+ ++ PA AGL+ DVI Sbjct: 313 TRPALGVGIVNVSDIS---AYQQKETLKLPANVTTGVVIGSVENGSPASKAGLKEFDVIY 369 Query: 365 KFDNQSITSTLSLRKYLYDHTKIGDELKITFYRNGEVKQVTVKL 408 K D+Q I +T+ LRK+LY+H + GD++K++ YRNG+ K T+ L Sbjct: 370 KLDDQKIDNTVELRKFLYEHKQPGDKVKVSVYRNGQPKTFTLTL 413 >Q4ER55.1 Q4ER55_LISMO Serine protease EC=3.4.21.- Length = 541 Score = 268 bits (685), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 156/337 (46%), Positives = 217/337 (64%), Gaps = 13/337 (3%) Query: 81 KVAASSGDPYDRIIQAAALVRPAVVSIINHKEDNK---ELNILDESALGSGVIYKKDDGK 137 KV S D + +A V+ AVVS++N++ + E++ GSGVIYKK +GK Sbjct: 202 KVEKVSVDTTSDVTKAVDKVQDAVVSVLNYQSSSSLDGTTTSEQEASSGSGVIYKKANGK 261 Query: 138 AFIITNNHVIEGAGKLEVVTVNGETRKATLVGADKVSDIAVLSIDAEGIKTVAQIGDSSK 197 A+I+TNNHV+ A KLEV NG+ +A L+G D+ +D+AVL ID + + TVA GDS Sbjct: 262 AYIVTNNHVVADANKLEVTFTNGKKSEAKLLGTDEWNDLAVLEIDDKNVTTVAAFGDSDS 321 Query: 198 LRLGETVIAIGNPLG--LGDTLTSGIVSYTERTIPVSLNQDGVYDWEQEVIQTDAAINEG 255 L+LGE IAIG+PLG ++T GI+S R +PV N DG DWE +VIQTDAAIN G Sbjct: 322 LKLGEPAIAIGSPLGTEFSGSVTQGIISGLNRAVPVDTNGDGTEDWEADVIQTDAAINPG 381 Query: 256 NSGGALVDLNGKVIGINTMKISDTGVEGLGFAIPANHVMETADELAAKGKIARSYLGVYS 315 NSGGAL+++ G+VIGIN+MKIS VEG+ FAIP+N V ++L KG++ R LGV Sbjct: 382 NSGGALINIEGQVIGINSMKISMENVEGISFAIPSNTVEPIIEQLETKGEVERPSLGVSL 441 Query: 316 VDLNNPYVPLAEDQRKE-LNLPDSVKDGVVVLDAV--GPAKVAGLQLNDVITKFDNQSIT 372 D++ + E Q+K L LPDSV G +V V A AGL+ DVI + + Q +T Sbjct: 442 RDVDT----IPETQQKNILKLPDSVDYGAMVQQVVSGSAADKAGLKQYDVIVELNGQKVT 497 Query: 373 STLSLRKYLY-DHTKIGDELKITFYRNGEVKQVTVKL 408 ++++LRK LY + KIGD++K+ +YR+G+ K +KL Sbjct: 498 NSMTLRKILYGNDVKIGDKVKVKYYRDGKEKSTDIKL 534 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.133 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,446,202,265 Number of extensions: 104168134 Number of successful extensions: 263484 Number of sequences better than 1.0e-05: 3749 Number of HSP's gapped: 250931 Number of HSP's successfully gapped: 3768 Length of query: 414 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 276 Effective length of database: 1,760,596,133 Effective search space: 485924532708 Effective search space used: 485924532708 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 132 (55.5 bits)