BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0044.0013.p
         (76 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K3L6.1 B3K3L6_9BACI Putative uncharacterized protein                 83   1e-14
B1DBZ0.1 B1DBZ0_9BACL Putative uncharacterized protein                 78   2e-13
C1P9D2.1 C1P9D2_BACCO Cold shock protein                               73   9e-12
B1D9C1.1 B1D9C1_9BACL Cold shock protein                               72   1e-11
C0Z5F0.1 C0Z5F0_BREBN Putative uncharacterized protein                 72   2e-11

>B3K3L6.1 B3K3L6_9BACI Putative uncharacterized protein
          Length = 80

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 48/66 (72%)

Query: 6  KPLEEVPEENTAIWACTNDGCNGWMRDNFAFEHAPSCRLCHSPMERSMKMLPQLLNSNGD 65
          KPLE +PEE TAIW+CT +GCNGW+RDNF+F+  P C  C S M  S K+LP L++S+  
Sbjct: 7  KPLENLPEEMTAIWSCTKEGCNGWIRDNFSFKDVPVCSQCASSMVSSNKILPILVSSDQQ 66

Query: 66 LKSLKK 71
          +K  +K
Sbjct: 67 IKLYRK 72


>B1DBZ0.1 B1DBZ0_9BACL Putative uncharacterized protein
          Length = 76

 Score = 78.2 bits (191), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 45/67 (67%)

Query: 1  MNYRKKPLEEVPEENTAIWACTNDGCNGWMRDNFAFEHAPSCRLCHSPMERSMKMLPQLL 60
          M  RKK  E++PE  T IW+C ++ CNGWMR NF+F+  P+C LC SPM    +MLP ++
Sbjct: 1  MYNRKKIQEDIPEVVTKIWSCASEDCNGWMRANFSFDQTPTCVLCQSPMISGERMLPLIV 60

Query: 61 NSNGDLK 67
          N N  +K
Sbjct: 61 NLNDSVK 67


>C1P9D2.1 C1P9D2_BACCO Cold shock protein
          Length = 62

 Score = 72.8 bits (177), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 40/59 (67%)

Query: 1  MNYRKKPLEEVPEENTAIWACTNDGCNGWMRDNFAFEHAPSCRLCHSPMERSMKMLPQL 59
          M Y     E VPE  T +WACTND CNG+MR+NF FE  P C LCHS M++ +++LP +
Sbjct: 2  MAYFNNQKEPVPEVETTVWACTNDDCNGFMRENFTFEEKPHCPLCHSDMKKEVRVLPVI 60


>B1D9C1.1 B1D9C1_9BACL Cold shock protein
          Length = 69

 Score = 72.4 bits (176), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 42/63 (66%)

Query: 1  MNYRKKPLEEVPEENTAIWACTNDGCNGWMRDNFAFEHAPSCRLCHSPMERSMKMLPQLL 60
          M  RKK  EE+P E T +W+C+++ C GWMRDNF+   AP C LC SPM +  +ML  + 
Sbjct: 2  MYSRKKTAEELPTELTVVWSCSSEQCKGWMRDNFSLSEAPVCFLCQSPMIKEERMLAVVA 61

Query: 61 NSN 63
          N++
Sbjct: 62 NTS 64


>C0Z5F0.1 C0Z5F0_BREBN Putative uncharacterized protein
          Length = 68

 Score = 71.6 bits (174), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 41/61 (67%)

Query: 1  MNYRKKPLEEVPEENTAIWACTNDGCNGWMRDNFAFEHAPSCRLCHSPMERSMKMLPQLL 60
          M + KK +  + EE T +W C+N+GC  WMRDNF+F+ +PSC  CH+ M +  +MLP + 
Sbjct: 1  MYFSKKAVVPIEEEETDVWTCSNEGCTCWMRDNFSFDKSPSCPFCHARMVKDTRMLPVIT 60

Query: 61 N 61
          N
Sbjct: 61 N 61


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.132    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 487,982,229
Number of extensions: 16245481
Number of successful extensions: 28765
Number of sequences better than 1.0e-05: 90
Number of HSP's gapped: 28767
Number of HSP's successfully gapped: 90
Length of query: 76
Length of database: 3,060,696,203
Length adjustment: 47
Effective length of query: 29
Effective length of database: 2,617,908,498
Effective search space: 75919346442
Effective search space used: 75919346442
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)