BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0044.0012.p (467 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K7W1.1 B3K7W1_9BACI Cytochrome bd ubiquinol oxidase subunit I 706 0.0 C2C3U8.1 C2C3U8_LISGR Cytochrome d ubiquinol oxidase, subunit I ... 631 e-179 B8DAS3.1 B8DAS3_LISMH Cytochrome D ubiquinol oxidase subunit 1 (... 621 e-176 A0AM56.1 A0AM56_LISW6 CydA protein EC=1.10.3.- 620 e-176 Q927C3.1 Q927C3_LISMO CydA protein 619 e-175 >B3K7W1.1 B3K7W1_9BACI Cytochrome bd ubiquinol oxidase subunit I Length = 467 Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/467 (72%), Positives = 392/467 (83%) Query: 1 MDTVMLSRIQFASTTIFHYFFVPVSIGLALLIAIMETMYVRKGNDEYKRMAQFWGKLFLI 60 MD VML+RIQFASTTIFH+ FVP+SIGLA LIAIMETMYV KG + YK+MA+FWGKLFLI Sbjct: 1 MDPVMLARIQFASTTIFHFIFVPLSIGLAFLIAIMETMYVVKGQEVYKKMAKFWGKLFLI 60 Query: 61 NFAVGVVTGILQEFQFGMNWSDYSRFVGDVFGXXXXXXXXXXXXXXSTFIGIWIFGWDKV 120 NFAVGVVTGILQEFQFGMNWSDYSRFVGDVFG STFIG+WIFGWD++ Sbjct: 61 NFAVGVVTGILQEFQFGMNWSDYSRFVGDVFGAPLAIEALLAFFLESTFIGLWIFGWDRL 120 Query: 121 SKRVHLLSIWLVALGTMLSAFWILLANSFMQHPVGFAVNNGRAEMNDIWALVTNGQLLVE 180 SK+VHLLSIWLV+ GT++SAFWIL ANSFMQ PVGF +NNGRAEMND +AL+TNGQLLVE Sbjct: 121 SKKVHLLSIWLVSFGTLMSAFWILAANSFMQRPVGFEINNGRAEMNDFFALITNGQLLVE 180 Query: 181 FPHTVLAAYATGAFLVTGISAYKLLKKQDVSFFRKSFEIAAIVGIISSFGVAIAGHAQAQ 240 FPHT+ A ATGAFLV G+SAYKLLKKQD+ FF+KSF IA +VG+I+S VA+ GH QAQ Sbjct: 181 FPHTIFGALATGAFLVAGVSAYKLLKKQDLDFFKKSFHIAIVVGLITSILVAVFGHQQAQ 240 Query: 241 YLVETQPMKMAASEGLWDDSGDPAAWTVIANIDPDNKISTHEVKIPYMLSFLSYSKFSGS 300 YLV+TQPMKMAA+E LW+ S DPA WTVIA IDPD + +T E KIPY+LSFLSYSKFSG Sbjct: 241 YLVDTQPMKMAAAESLWETSDDPAPWTVIAAIDPDKQENTIEFKIPYLLSFLSYSKFSGE 300 Query: 301 VKGMNTLQAEYEQAYGPGDYIPPVRTTFWSFRIMVAAGSLMILLGVYAIYLMWRKKMERP 360 V GM LQA+YEQ YGPGDYIPPVRTTFWSFRIMVAAGS+MIL+G+Y +LM RKK+E+ Sbjct: 301 VIGMKELQAQYEQEYGPGDYIPPVRTTFWSFRIMVAAGSVMILMGLYGAWLMLRKKVEKA 360 Query: 361 NTWFMRFMFWGLLLPPIANTSGWIMTEMGRQPWTVFGLMTTEDSVSPNITSGQVLFSVIS 420 WF+R M +G+ LP IANTSGWIMTE+GRQPWTVFGL+TTE+SVSPN+++G +LFS+I Sbjct: 361 GKWFLRLMLFGISLPFIANTSGWIMTEIGRQPWTVFGLITTENSVSPNVSAGSILFSLIM 420 Query: 421 FTAIYAILGLVLVGLFIKVIKKGPYAMDNDHGESHDPYNKEGSHAFS 467 FTAIYA+L V+ LFIKVIKKGPYA + D + DP+NKE +A S Sbjct: 421 FTAIYAVLAAVMAYLFIKVIKKGPYAAEEDDHHASDPFNKEDYNAVS 467 >C2C3U8.1 C2C3U8_LISGR Cytochrome d ubiquinol oxidase, subunit I EC=1.10.3.- Length = 468 Score = 631 bits (1627), Expect = e-179, Method: Compositional matrix adjust. Identities = 294/464 (63%), Positives = 371/464 (79%), Gaps = 2/464 (0%) Query: 1 MDTVMLSRIQFASTTIFHYFFVPVSIGLALLIAIMETMYVRKGNDEYKRMAQFWGKLFLI 60 MD + L+R QFASTTIFH+ FVP+SIGL ++A+MET+YV K + YK+M++FWG LFLI Sbjct: 1 MDKLFLARFQFASTTIFHFLFVPLSIGLVFMVALMETLYVVKKKEIYKKMSKFWGHLFLI 60 Query: 61 NFAVGVVTGILQEFQFGMNWSDYSRFVGDVFGXXXXXXXXXXXXXXSTFIGIWIFGWDKV 120 NFAVGVVTGI+QEFQFGMNWSDYSRFVGDVFG STFIG+WIFGW+++ Sbjct: 61 NFAVGVVTGIIQEFQFGMNWSDYSRFVGDVFGAPLAIEALLAFFMESTFIGLWIFGWERL 120 Query: 121 SKRVHLLSIWLVALGTMLSAFWILLANSFMQHPVGFAVNNGRAEMNDIWALVTNGQLLVE 180 K++HL IWLVA+GT+LSAFWIL ANSFMQHPVGFA NGRAEMND W L+TNGQLLVE Sbjct: 121 GKKLHLACIWLVAIGTILSAFWILAANSFMQHPVGFAFKNGRAEMNDFWQLITNGQLLVE 180 Query: 181 FPHTVLAAYATGAFLVTGISAYKLLKKQDVSFFRKSFEIAAIVGIISSFGVAIAGHAQAQ 240 FPH + A+ATGAF V G+SAYK++KKQDV+FF++SF+IA ++ +I FGVA +GH+QAQ Sbjct: 181 FPHVIFGAFATGAFFVAGVSAYKMMKKQDVNFFKRSFQIAMVMAVIGGFGVAFSGHSQAQ 240 Query: 241 YLVETQPMKMAASEGLWDDSGDPAAWTVIANIDPDNKISTHEVKIPYMLSFLSYSKFSGS 300 YLV+TQPMKMAA+EG+W+D+G PAAWT I I+ K + EVK+PY+LSFLSYSKFSGS Sbjct: 241 YLVKTQPMKMAATEGVWEDTGSPAAWTFIGGINDKKKKNDWEVKVPYLLSFLSYSKFSGS 300 Query: 301 VKGMNTLQAEYEQAYGPGDYIPPVRTTFWSFRIMVAAGSLMILLGVYAIYLMWRKKMERP 360 V+GMNTLQ +YE+ YGPG+YIPPV+T+FWSFRIMV AG LMIL + + L WRK++ Sbjct: 301 VEGMNTLQKDYEKVYGPGNYIPPVKTSFWSFRIMVGAGMLMILFAMIGVVLAWRKRLVHA 360 Query: 361 NTWFMRFMFWGLLLPPIANTSGWIMTEMGRQPWTVFGLMTTEDSVSPNITSGQVLFSVIS 420 TW++R M +L P +AN+ GWIMTE+GRQPW VFG M T+D+VSPN+++G +LFS+I+ Sbjct: 361 -TWYLRLMVPMILFPFLANSMGWIMTEIGRQPWVVFGYMQTKDAVSPNVSAGSILFSIIT 419 Query: 421 FTAIYAILGLVLVGLFIKVIKKGPYAMDN-DHGESHDPYNKEGS 463 F+ IYAIL +VL+ LFI+ IKKGP + + S DP++K G Sbjct: 420 FSTIYAILAIVLIYLFIREIKKGPDGHEEVEENVSVDPFDKGGE 463 >B8DAS3.1 B8DAS3_LISMH Cytochrome D ubiquinol oxidase subunit 1 (Cytochrome dubiquinol oxidase subunit I) EC=1.10.3.- Length = 468 Score = 621 bits (1601), Expect = e-176, Method: Compositional matrix adjust. Identities = 291/467 (62%), Positives = 367/467 (78%), Gaps = 3/467 (0%) Query: 1 MDTVMLSRIQFASTTIFHYFFVPVSIGLALLIAIMETMYVRKGNDEYKRMAQFWGKLFLI 60 MD + L+R QFASTTIFH+ FVP+SIGL ++A+MET+YV KG + YK+M++FWG +FLI Sbjct: 1 MDKLFLARFQFASTTIFHFLFVPLSIGLVFMVALMETLYVVKGKEIYKKMSKFWGHIFLI 60 Query: 61 NFAVGVVTGILQEFQFGMNWSDYSRFVGDVFGXXXXXXXXXXXXXXSTFIGIWIFGWDKV 120 NFAVGVVTGI+QEFQFGMNWSDYSRFVGDVFG STFIG+WIFGWDK+ Sbjct: 61 NFAVGVVTGIIQEFQFGMNWSDYSRFVGDVFGAPLAIEALLAFFMESTFIGLWIFGWDKL 120 Query: 121 SKRVHLLSIWLVALGTMLSAFWILLANSFMQHPVGFAVNNGRAEMNDIWALVTNGQLLVE 180 SK++HL IWLV++GT++S+FWIL ANSFMQHPVGF NGRAEMND L+TNGQLLVE Sbjct: 121 SKKLHLACIWLVSIGTIMSSFWILAANSFMQHPVGFEFKNGRAEMNDFLQLITNGQLLVE 180 Query: 181 FPHTVLAAYATGAFLVTGISAYKLLKKQDVSFFRKSFEIAAIVGIISSFGVAIAGHAQAQ 240 FPH + A+ATGAF + G+SAYK+LKKQDV+FF++SF+IA ++ +I FGVA +GH+QAQ Sbjct: 181 FPHVIFGAFATGAFFIAGVSAYKMLKKQDVAFFKRSFQIAMVMAVIGGFGVAFSGHSQAQ 240 Query: 241 YLVETQPMKMAASEGLWDDSGDPAAWTVIANIDPDNKISTHEVKIPYMLSFLSYSKFSGS 300 YLV+TQPMKMAA+EG+W+D+ DPA WT+IA I+P+ K + EV +PY LSFLSY +GS Sbjct: 241 YLVKTQPMKMAATEGIWEDTADPAPWTMIAKINPEEKKNEWEVNVPYALSFLSYGTLTGS 300 Query: 301 VKGMNTLQAEYEQAYGPGDYIPPVRTTFWSFRIMVAAGSLMILLGVYAIYLMWRKKMERP 360 V+GMNTLQ +YE+ YG GDYIPPV+T FWSFRIMV AG LMIL + I L W+KK+ Sbjct: 301 VEGMNTLQKQYEEKYGEGDYIPPVKTAFWSFRIMVGAGMLMILFALIGIVLAWKKKLVNA 360 Query: 361 NTWFMRFMFWGLLLPPIANTSGWIMTEMGRQPWTVFGLMTTEDSVSPNITSGQVLFSVIS 420 W++RFM + P +AN+ GWIMTE+GRQPW VFG M T D+VSPN++SGQ+LFS+I+ Sbjct: 361 K-WYLRFMIPMIGFPFLANSMGWIMTEIGRQPWVVFGYMKTADAVSPNVSSGQILFSIIA 419 Query: 421 FTAIYAILGLVLVGLFIKVIKKGPYAMDNDHGE-SHDPYNKEGSHAF 466 F+ IY IL ++LV LFI+ IKKGP + E S DP++K G +F Sbjct: 420 FSTIYTILAILLVYLFIREIKKGPDGHKPEKAEISVDPFDK-GDESF 465 >A0AM56.1 A0AM56_LISW6 CydA protein EC=1.10.3.- Length = 468 Score = 620 bits (1600), Expect = e-176, Method: Compositional matrix adjust. Identities = 289/461 (62%), Positives = 364/461 (78%), Gaps = 2/461 (0%) Query: 1 MDTVMLSRIQFASTTIFHYFFVPVSIGLALLIAIMETMYVRKGNDEYKRMAQFWGKLFLI 60 MD + L+R QFASTTIFH+ FVP+SIGL ++A+MET+YV KG + YK+M++FWG +FLI Sbjct: 1 MDKLFLARFQFASTTIFHFLFVPLSIGLVFMVALMETLYVVKGKEIYKKMSKFWGHIFLI 60 Query: 61 NFAVGVVTGILQEFQFGMNWSDYSRFVGDVFGXXXXXXXXXXXXXXSTFIGIWIFGWDKV 120 NFAVGVVTGI+QEFQFGMNWSDYSRFVGDVFG STFIG+WIFGWD++ Sbjct: 61 NFAVGVVTGIIQEFQFGMNWSDYSRFVGDVFGAPLAIEALLAFFMESTFIGLWIFGWDRL 120 Query: 121 SKRVHLLSIWLVALGTMLSAFWILLANSFMQHPVGFAVNNGRAEMNDIWALVTNGQLLVE 180 SK++HL IWLVA+GT++S+FWIL ANSFMQHPVGF NGRAEMND L+TNGQLLVE Sbjct: 121 SKKLHLACIWLVAIGTIMSSFWILAANSFMQHPVGFEFKNGRAEMNDFLQLITNGQLLVE 180 Query: 181 FPHTVLAAYATGAFLVTGISAYKLLKKQDVSFFRKSFEIAAIVGIISSFGVAIAGHAQAQ 240 FPH + A+ATGAF + G+SAYK+LKKQDV+FF++SF+IA ++ +I FGVA +GH+QAQ Sbjct: 181 FPHVIFGAFATGAFFIAGVSAYKMLKKQDVAFFKRSFQIAMVMAVIGGFGVAFSGHSQAQ 240 Query: 241 YLVETQPMKMAASEGLWDDSGDPAAWTVIANIDPDNKISTHEVKIPYMLSFLSYSKFSGS 300 YLV+TQPMKMAA+EG+W+D+ DPA WT+IA I+P+ K + EV +PY LSFLSY +GS Sbjct: 241 YLVKTQPMKMAATEGIWEDTADPAPWTMIAKINPEEKKNEWEVNVPYALSFLSYGTLTGS 300 Query: 301 VKGMNTLQAEYEQAYGPGDYIPPVRTTFWSFRIMVAAGSLMILLGVYAIYLMWRKKMERP 360 V+GMNTLQ +YE+ YG GDYIPPV+T FWSFRIMV AG LMIL + I L W+KK+ Sbjct: 301 VEGMNTLQKQYEEKYGEGDYIPPVKTAFWSFRIMVGAGMLMILFALIGIVLAWKKKLVNA 360 Query: 361 NTWFMRFMFWGLLLPPIANTSGWIMTEMGRQPWTVFGLMTTEDSVSPNITSGQVLFSVIS 420 W++RFM + P +AN+ GWIMTE+GRQPW VFG M T D+VSPN++SGQ+LFS+I+ Sbjct: 361 K-WYLRFMIPMIGFPFLANSMGWIMTEIGRQPWVVFGYMKTADAVSPNVSSGQILFSIIA 419 Query: 421 FTAIYAILGLVLVGLFIKVIKKGPYAMDNDHGE-SHDPYNK 460 F+ IY IL ++LV LFI+ IKKGP + E S DP++K Sbjct: 420 FSTIYTILAILLVYLFIREIKKGPDGHKPEKAEISVDPFDK 460 >Q927C3.1 Q927C3_LISMO CydA protein Length = 468 Score = 619 bits (1597), Expect = e-175, Method: Compositional matrix adjust. Identities = 290/467 (62%), Positives = 366/467 (78%), Gaps = 3/467 (0%) Query: 1 MDTVMLSRIQFASTTIFHYFFVPVSIGLALLIAIMETMYVRKGNDEYKRMAQFWGKLFLI 60 MD + L+R QFASTTIFH+ FVP+SIGL ++A+MET+YV KG + YK+M++FWG +FLI Sbjct: 1 MDKLFLARFQFASTTIFHFLFVPLSIGLVFMVALMETLYVVKGKEIYKKMSKFWGHIFLI 60 Query: 61 NFAVGVVTGILQEFQFGMNWSDYSRFVGDVFGXXXXXXXXXXXXXXSTFIGIWIFGWDKV 120 NFAVGVVTGI+QEFQFGMNWSDYSRFVGDVFG STFIG+WIFGWDK+ Sbjct: 61 NFAVGVVTGIIQEFQFGMNWSDYSRFVGDVFGAPLAIEALLAFFMESTFIGLWIFGWDKL 120 Query: 121 SKRVHLLSIWLVALGTMLSAFWILLANSFMQHPVGFAVNNGRAEMNDIWALVTNGQLLVE 180 K++HL IWLV++GT++S+FWIL ANSFMQHPVGF NGRAEMND L+TNGQLLVE Sbjct: 121 GKKLHLACIWLVSIGTIMSSFWILAANSFMQHPVGFEFKNGRAEMNDFLQLITNGQLLVE 180 Query: 181 FPHTVLAAYATGAFLVTGISAYKLLKKQDVSFFRKSFEIAAIVGIISSFGVAIAGHAQAQ 240 FPH + A+ATGAF + G+SAYK+LKKQDV+FF++SF+IA ++ +I FGVA +GH+QAQ Sbjct: 181 FPHVIFGAFATGAFFIAGVSAYKMLKKQDVAFFKRSFQIAMVMAVIGGFGVAFSGHSQAQ 240 Query: 241 YLVETQPMKMAASEGLWDDSGDPAAWTVIANIDPDNKISTHEVKIPYMLSFLSYSKFSGS 300 YLV+TQPMKMAA+EG+W+D+ DPA WT+IA I+P+ K + EV +PY LSFLSY +GS Sbjct: 241 YLVKTQPMKMAATEGIWEDTADPAPWTMIAKINPEEKKNEWEVNVPYALSFLSYGTLTGS 300 Query: 301 VKGMNTLQAEYEQAYGPGDYIPPVRTTFWSFRIMVAAGSLMILLGVYAIYLMWRKKMERP 360 V+GMNTLQ +YE+ YG GDYIPPV+T FWSFRIMV AG LMIL + I L W+KK+ Sbjct: 301 VEGMNTLQKQYEEKYGEGDYIPPVKTAFWSFRIMVGAGMLMILFALIGIVLAWKKKLVNA 360 Query: 361 NTWFMRFMFWGLLLPPIANTSGWIMTEMGRQPWTVFGLMTTEDSVSPNITSGQVLFSVIS 420 W++RFM + P +AN+ GWIMTE+GRQPW VFG M T D+VSPN++SGQ+LFS+I+ Sbjct: 361 K-WYLRFMIPMIGFPFLANSMGWIMTEIGRQPWVVFGYMKTADAVSPNVSSGQILFSIIA 419 Query: 421 FTAIYAILGLVLVGLFIKVIKKGPYAMDNDHGE-SHDPYNKEGSHAF 466 F+ IY IL ++LV LFI+ IKKGP + E S DP++K G +F Sbjct: 420 FSTIYTILAILLVYLFIREIKKGPDGHKPEKAEISVDPFDK-GDESF 465 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.325 0.138 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,709,543,083 Number of extensions: 108151766 Number of successful extensions: 366859 Number of sequences better than 1.0e-05: 1668 Number of HSP's gapped: 361088 Number of HSP's successfully gapped: 2236 Length of query: 467 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 328 Effective length of database: 1,751,175,118 Effective search space: 574385438704 Effective search space used: 574385438704 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 133 (55.8 bits)