BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0044.0009.p (592 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K7V8.1 B3K7V8_9BACI ABC transporter, CydDC cysteine exporter (... 660 0.0 C0ZJJ7.1 C0ZJJ7_BREBN ABC transporter ATP binding/permease protein 543 e-152 P94367.1 CYDD_BACSU ATP-binding/permease protein cydD 540 e-151 B8DAS6.1 B8DAS6_LISMH ABC transporter, CydDC cysteine exporter (... 528 e-148 Q927C6.1 Q927C6_LISIN CydD protein 525 e-147 >B3K7V8.1 B3K7V8_9BACI ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC Length = 598 Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/597 (55%), Positives = 422/597 (70%), Gaps = 14/597 (2%) Query: 1 LKREGWFAPYFNSYFWRFLLIIVLGALTIFSASSLMYTSGFLISKASIPPENILMIYVPI 60 +K+E WF PY + FWRFLLI+ LG LTI A LM+TSG+LISK+++ PENILM+YVP Sbjct: 1 MKQESWFRPYVTANFWRFLLIVTLGVLTILFAGMLMFTSGYLISKSALRPENILMVYVPT 60 Query: 61 VGVRTFGTSRAVIHYVERLVSHDTILRILSKMRIRLYNILEPQALFLSSRFRTGDILGML 120 VGVRTFG RAVIHYVERLV HDTILRILS+MR+RLY ILEPQAL LSSR+RTGD+LG+L Sbjct: 61 VGVRTFGIGRAVIHYVERLVGHDTILRILSRMRLRLYRILEPQALRLSSRYRTGDLLGVL 120 Query: 121 ADDIEYLQNVYLRTVFPXXXXXXXXXXXXXXXGTFDVAFALLMGLYMXXXXXXXXXXXXX 180 +DDIEYLQ+VY+RTVFP G FD AFALL+ LY+ Sbjct: 121 SDDIEYLQDVYIRTVFPSIVALVLYAGVILAVGQFDPAFALLLALYIAVLILVLPLISLL 180 Query: 181 XTQSRQRMVKQERNRLYQKLTDAVLGMGDWIISGRQSQFVASYEADERLVARTDGALRRW 240 T+ + R VKQ R+ LY+KLTDAVLG+ +W +SGRQ++F+ YEADE V RTD +L+RW Sbjct: 181 LTKRKNREVKQARSHLYRKLTDAVLGIHEWYVSGRQAEFLTGYEADEAEVDRTDRSLKRW 240 Query: 241 ARARMFIGQAVVGIAVVSIIYWAAGEYQSGAIAGTLIAAFVLVVFPVADAFLPVSEAVEK 300 +R R FIGQ VV + VVS++YW+ +Y GAI TLIAAFVLVVFP+ DAFLPVSEAVE+ Sbjct: 241 SRLRAFIGQGVVAVTVVSVVYWSGRQYADGAIDVTLIAAFVLVVFPLMDAFLPVSEAVER 300 Query: 301 IPQYRNSLERLNXXXXXXXXXXXXXXXXXXXXXXXKIQSTRQVHIQLKNTGYRYASGEDW 360 IPQY S+ RL + +R VH++ +RY G D Sbjct: 301 IPQYGQSVARLRAIESADASEGRQDLPQMLDKAEVESIISRGVHVKADGVSFRYDQGADG 360 Query: 361 S--------------IQDLNLDIPQGRKIAIIGRSGAGKSTLLKVIQGVIAPSVGSAVIN 406 + D++LDI G K+A+IGRSGAGKSTLL++IQGV+APS GS + Sbjct: 361 PSRLEPSGVDREASVLTDVSLDIAPGAKVAVIGRSGAGKSTLLQLIQGVLAPSGGSLTLG 420 Query: 407 GIAASAYGEDIPKLIAVLNQSPHLFDTTVANNIRLGKPDASDEEVKQAGKLAQLDDLISS 466 G+ ++ +G++I +I+VLNQSPHLFDTT+ANNIRLG PDA++ E++ A +A+L+ L++S Sbjct: 421 GVESARFGDEISSVISVLNQSPHLFDTTLANNIRLGSPDATEAEIRDAAAMARLEPLVAS 480 Query: 467 LPEGYDTPVREAGQRFSGGERQRIALARILLQNTPAVVLDEPTVGLDPRTERELLATMFT 526 LP G T ++EAGQRFSGGERQR+ALARILLQ TP V+LDEPTVGLDP+TERELL+T+F Sbjct: 481 LPAGLGTRMQEAGQRFSGGERQRVALARILLQRTPVVILDEPTVGLDPKTERELLSTIFA 540 Query: 527 AMADKTLIWVTHHLVGAEQMDEVIFMENGTVEMRGTHXXXXXXXXXXXXXXXXDRPA 583 ++ D+TLIWVTHHLVG E+MDE++FME+G + MRGTH DRPA Sbjct: 541 SLQDRTLIWVTHHLVGVERMDEILFMEDGRIVMRGTHDELMERYPRYRNLYRLDRPA 597 >C0ZJJ7.1 C0ZJJ7_BREBN ABC transporter ATP binding/permease protein Length = 584 Score = 543 bits (1398), Expect = e-152, Method: Compositional matrix adjust. Identities = 279/560 (49%), Positives = 362/560 (64%), Gaps = 10/560 (1%) Query: 4 EGWFAPYFNSYFWRFLLIIVLGALTIFSASSLMYTSGFLISKASIPPENILMIYVPIVGV 63 +GWF PYF +FW+F +LG L + AS+L+YTSG+LIS++++ PEN+LM+YVPIV V Sbjct: 9 QGWFLPYFRQFFWQFAAAALLGTLAVACASALLYTSGYLISRSALKPENVLMVYVPIVLV 68 Query: 64 RTFGTSRAVIHYVERLVSHDTILRILSKMRIRLYNILEPQALFLSSRFRTGDILGMLADD 123 R FG S+AVI Y+ERLV HD LR+LS+MR+RLY +E Q L +RFRTGD+LG+LADD Sbjct: 69 RAFGFSKAVIQYLERLVGHDAALRVLSRMRVRLYQTIELQDQLLRTRFRTGDLLGVLADD 128 Query: 124 IEYLQNVYLRTVFPXXXXXXXXXXXXXXXGTFDVAFALLMGLYMXXXXXXXXXXXXXXTQ 183 IE LQNVYLR V P G D FALLM LY + Sbjct: 129 IEQLQNVYLRFVLPAVSAVLLYGAGIVALGRMDGMFALLMALYCGFLLLVAPAVVLWSSI 188 Query: 184 SRQRMVKQERNRLYQKLTDAVLGMGDWIISGRQSQFVASYEADERLVARTDGALRRWARA 243 ++ R KQER Y++LTDAV GM DWI+SGR QF+ + ++ A+ + +RR Sbjct: 189 AKSRRFKQERQAAYRELTDAVFGMSDWILSGRTQQFLQLFSRRQKTAAQIENGIRRGEWR 248 Query: 244 RMFIGQAVVGIAVVSIIYWAAGEYQSGAIAGTLIAAFVLVVFPVADAFLPVSEAVEKIPQ 303 ++ Q +G A+V ++ WA G + I TLIAA LV FP+ DAF +S+AV ++P+ Sbjct: 249 VQWMSQCAIGGAIVLLVIWAGGLAGANQIPVTLIAAIGLVAFPLMDAFARISDAVVRMPE 308 Query: 304 YRNSLERLNXXXXXXXXXXXXXXXXXXXXXXXKIQSTRQVHIQLKNTGYRYASGEDWSIQ 363 Y+ SLERL K+ ++ ++ +RY WS+Q Sbjct: 309 YKESLERLREIEGGRPFVEAQKE---------KVADQAGGILKFEHVRFRYPQASSWSVQ 359 Query: 364 DLNLDIPQGRKIAIIGRSGAGKSTLLKVIQGVIAPSVGSAVINGIAASAYGEDIPKLIAV 423 D++ D+PQG +IA++GRSGAGKST+L +I+G + P VG +NG + E L +V Sbjct: 360 DVSFDVPQGGEIALLGRSGAGKSTILNLIRGALQPEVGQVTVNGQPVQSE-EASACLFSV 418 Query: 424 LNQSPHLFDTTVANNIRLGKPDASDEEVKQAGKLAQLDDLISSLPEGYDTPVREAGQRFS 483 LNQ P+LFDTTVANNIRLG+PDASDEEV+ LD LI SLP+GY T ++E G RFS Sbjct: 419 LNQQPYLFDTTVANNIRLGRPDASDEEVRAVTAQVGLDQLIESLPDGYQTRMQETGLRFS 478 Query: 484 GGERQRIALARILLQNTPAVVLDEPTVGLDPRTERELLATMFTAMADKTLIWVTHHLVGA 543 GGERQRIALARILLQN P V+LDEPTVGLDP TER+L+AT+F + KTLIWVTHHL G Sbjct: 479 GGERQRIALARILLQNKPIVLLDEPTVGLDPLTERDLMATIFRVLQGKTLIWVTHHLSGL 538 Query: 544 EQMDEVIFMENGTVEMRGTH 563 EQMDE+IFME G + MRGTH Sbjct: 539 EQMDEIIFMEQGFISMRGTH 558 >P94367.1 CYDD_BACSU ATP-binding/permease protein cydD Length = 575 Score = 540 bits (1391), Expect = e-151, Method: Compositional matrix adjust. Identities = 265/563 (47%), Positives = 372/563 (66%), Gaps = 9/563 (1%) Query: 1 LKREGWFAPYFNSYFWRFLLIIVLGALTIFSASSLMYTSGFLISKASIPPENILMIYVPI 60 +K+E W PY F+L+I LGA+TIFSA+ LM+TSGFLISKA+ PENIL+IYVPI Sbjct: 1 MKKEEWILPYIKQNARLFVLVIFLGAVTIFSAAFLMFTSGFLISKAATRPENILLIYVPI 60 Query: 61 VGVRTFGTSRAVIHYVERLVSHDTILRILSKMRIRLYNILEPQALFLSSRFRTGDILGML 120 V VRTFG +R+V YVERLV H IL+I+S MR+RLYN+LEP AL L SRFRTGD+LG+L Sbjct: 61 VAVRTFGIARSVSRYVERLVGHHIILKIVSDMRVRLYNMLEPGALMLRSRFRTGDMLGIL 120 Query: 121 ADDIEYLQNVYLRTVFPXXXXXXXXXXXXXXXGTFDVAFALLMGLYMXXXXXXXXXXXXX 180 ++DIE+LQ+ +L+T+FP G F FA+L+ LY+ Sbjct: 121 SEDIEHLQDAFLKTIFPAISALLLYAVSVIALGFFSWPFAILLALYLFVLVVLFPVVSLL 180 Query: 181 XTQSRQRMVKQERNRLYQKLTDAVLGMGDWIISGRQSQFVASYEADERLVARTDGALRRW 240 T+++ +K RN LY +LTDAV+G+ DW+ SGR+ F+ +YE +ER + +R+ Sbjct: 181 VTRAKNAKLKSGRNVLYSRLTDAVMGVSDWMFSGRRHAFIDAYEKEERDWFELERKKQRF 240 Query: 241 ARARMFIGQAVVGIAVVSIIYWAAGEYQSGAIAGTLIAAFVLVVFPVADAFLPVSEAVEK 300 R R F Q +V ++ +++W AG+ G +A T+IAAFVLVVFP+ +AFLP+S+A+ + Sbjct: 241 TRWRDFAAQCLVAGLILLMLFWTAGQQADGELAKTMIAAFVLVVFPLTEAFLPLSDALGE 300 Query: 301 IPQYRNSLERLNXXXXXXXXXXXXXXXXXXXXXXXKIQSTRQVHIQLKNTGYRYASGEDW 360 +P Y++S+ R+N +I + V + ++ + Y + Sbjct: 301 VPGYQDSIRRMN--------NVAPQPEASQTESGDQILDLQDVTLAFRDVTFSYDNSSQ- 351 Query: 361 SIQDLNLDIPQGRKIAIIGRSGAGKSTLLKVIQGVIAPSVGSAVINGIAASAYGEDIPKL 420 + + + + QG K+A++GRSG+GKST L +I+G + P GS +NG+ + + I Sbjct: 352 VLHNFSFTLRQGEKMALLGRSGSGKSTSLALIEGALKPDSGSVTLNGVETALLKDQIADA 411 Query: 421 IAVLNQSPHLFDTTVANNIRLGKPDASDEEVKQAGKLAQLDDLISSLPEGYDTPVREAGQ 480 +AVLNQ PHLFDT++ NNIRLG +ASDE+V++A K +L D I SLP+GY T V+E G Sbjct: 412 VAVLNQKPHLFDTSILNNIRLGNGEASDEDVRRAAKQVKLHDYIESLPDGYHTSVQETGI 471 Query: 481 RFSGGERQRIALARILLQNTPAVVLDEPTVGLDPRTERELLATMFTAMADKTLIWVTHHL 540 RFSGGERQRIALARILLQ+TP ++LDEPTVGLDP TEREL+ T+F + KT++W+THHL Sbjct: 472 RFSGGERQRIALARILLQDTPIIILDEPTVGLDPITERELMETVFEVLKGKTILWITHHL 531 Query: 541 VGAEQMDEVIFMENGTVEMRGTH 563 G E D+++F+ENG EM GTH Sbjct: 532 AGVEAADKIVFLENGKTEMEGTH 554 >B8DAS6.1 B8DAS6_LISMH ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC Length = 580 Score = 528 bits (1360), Expect = e-148, Method: Compositional matrix adjust. Identities = 273/582 (46%), Positives = 352/582 (60%), Gaps = 6/582 (1%) Query: 1 LKREGWFAPYFNSYFWRFLLIIVLGALTIFSASSLMYTSGFLISKASIPPENILMIYVPI 60 +++ W PY FLL+I LG LT SA +LM+TSG LISK+S+ PE+I+ +Y+ Sbjct: 2 MRKSSWIIPYIKENRGLFLLVIFLGTLTFASAGALMFTSGHLISKSSLMPESIMAVYIST 61 Query: 61 VGVRTFGTSRAVIHYVERLVSHDTILRILSKMRIRLYNILEPQALFLSSRFRTGDILGML 120 VGVR FG R+V YVERL SH +LRIL KMR+RLY +LEPQAL L SR++TGDILG+L Sbjct: 62 VGVRAFGIMRSVSRYVERLSSHSLVLRILEKMRVRLYRLLEPQALLLKSRYKTGDILGLL 121 Query: 121 ADDIEYLQNVYLRTVFPXXXXXXXXXXXXXXXGTFDVAFALLMGLYMXXXXXXXXXXXXX 180 A DIE+LQN YL T+ P G F + FA L L + Sbjct: 122 AGDIEHLQNFYLTTMLPAIVSLVLYAGVVIALGAFSIPFAALFVLLIGLLVLVLPWVSLL 181 Query: 181 XTQSRQRMVKQERNRLYQKLTDAVLGMGDWIISGRQSQFVASYEADERLVARTDGALRRW 240 + + +KQ RN LYQK TDAV G+ DW SGR+ F+++YE DE + RT+ + Sbjct: 182 YARGKNAYLKQGRNSLYQKFTDAVFGISDWKFSGREKTFISNYEKDEADMLRTENKQFHF 241 Query: 241 ARARMFIGQAVVGIAVVSIIYWAAGEYQSGAIAGTLIAAFVLVVFPVADAFLPVSEAVEK 300 R F Q VVG V+ ++YW+ E + GA +GT+IAAFVL + +A+AF+PVS A+ Sbjct: 242 VNWRDFFSQLVVGFMVIVMVYWSTAESRDGAFSGTMIAAFVLAIMALAEAFVPVSSAISD 301 Query: 301 IPQYRNSLERLNXXXXXXXXXXXXXXXXXXXXXXXKIQSTRQVHIQLKNTGYRYASGEDW 360 Y++SL RL+ +T V ++ +N + Y Sbjct: 302 KSLYQDSLARLDKIEDPTLPTFEEEMNEMERI------NTGNVILKAENLTFAYDKKSPE 355 Query: 361 SIQDLNLDIPQGRKIAIIGRSGAGKSTLLKVIQGVIAPSVGSAVINGIAASAYGEDIPKL 420 + N + QG K+AIIGRSG GKST LK++QG + P+ G +NG+ IP+L Sbjct: 356 ILNGFNFTLKQGEKVAIIGRSGTGKSTFLKLVQGALLPTAGKVTMNGVEVENLRPQIPEL 415 Query: 421 IAVLNQSPHLFDTTVANNIRLGKPDASDEEVKQAGKLAQLDDLISSLPEGYDTPVREAGQ 480 ++LNQ HLF TTV NNIRLG DASDEEV +A K QL D I S+P+GY T + E G+ Sbjct: 416 TSMLNQKAHLFSTTVLNNIRLGNQDASDEEVYEAAKKVQLHDFIMSMPDGYHTQMSEMGE 475 Query: 481 RFSGGERQRIALARILLQNTPAVVLDEPTVGLDPRTERELLATMFTAMADKTLIWVTHHL 540 RFSGGER RIALARILLQNTP V+LDEPTVGLDP TER+LLAT+F +ADK+LIWVTHHL Sbjct: 476 RFSGGERGRIALARILLQNTPIVILDEPTVGLDPITERDLLATIFETLADKSLIWVTHHL 535 Query: 541 VGAEQMDEVIFMENGTVEMRGTHXXXXXXXXXXXXXXXXDRP 582 VGAE+MD V+F+E G M G H DRP Sbjct: 536 VGAEKMDRVLFLEEGKTLMEGPHAELMAEEPRYKRLYQLDRP 577 >Q927C6.1 Q927C6_LISIN CydD protein Length = 579 Score = 525 bits (1353), Expect = e-147, Method: Compositional matrix adjust. Identities = 271/582 (46%), Positives = 351/582 (60%), Gaps = 6/582 (1%) Query: 1 LKREGWFAPYFNSYFWRFLLIIVLGALTIFSASSLMYTSGFLISKASIPPENILMIYVPI 60 +++ W PY FLL+I LG LT SA +LM+TSG LISK+S+ PE+I+ +Y+ Sbjct: 1 MRKSSWIIPYIKENRGLFLLVIFLGTLTFASAGALMFTSGHLISKSSLMPESIMAVYIST 60 Query: 61 VGVRTFGTSRAVIHYVERLVSHDTILRILSKMRIRLYNILEPQALFLSSRFRTGDILGML 120 VGVR FG R+V YVERL SH +LRIL KMR+RLY +LEPQAL L SR++TGDILG+L Sbjct: 61 VGVRAFGIMRSVSRYVERLSSHSLVLRILEKMRVRLYRLLEPQALLLKSRYKTGDILGLL 120 Query: 121 ADDIEYLQNVYLRTVFPXXXXXXXXXXXXXXXGTFDVAFALLMGLYMXXXXXXXXXXXXX 180 A DIE+LQN YL T+ P G F + FA L L + Sbjct: 121 AGDIEHLQNFYLTTMLPAIVSLVLYAIVVILLGAFSIPFAALFVLLIGLLVLVLPWVSLL 180 Query: 181 XTQSRQRMVKQERNRLYQKLTDAVLGMGDWIISGRQSQFVASYEADERLVARTDGALRRW 240 + + +KQ RN LYQK TDAV G+ DW SGR+ F+ +YE DE + RT+ + Sbjct: 181 YARGKNAYLKQGRNSLYQKFTDAVFGISDWKFSGREKTFITNYEKDEADMLRTENKQFHF 240 Query: 241 ARARMFIGQAVVGIAVVSIIYWAAGEYQSGAIAGTLIAAFVLVVFPVADAFLPVSEAVEK 300 R F Q VVG V+ ++YW+ E + GA +GT+IAAFVL + +A+AF+PVS A+ Sbjct: 241 VNWRDFFSQLVVGFMVIVMVYWSTAESRDGAFSGTMIAAFVLAIMALAEAFVPVSSAISD 300 Query: 301 IPQYRNSLERLNXXXXXXXXXXXXXXXXXXXXXXXKIQSTRQVHIQLKNTGYRYASGEDW 360 Y++SL RL+ +T V ++ +N + Y + Sbjct: 301 KSLYQDSLARLDKIEDPALPTFEEETKEIARI------NTENVVLKAENLSFAYDNKSPK 354 Query: 361 SIQDLNLDIPQGRKIAIIGRSGAGKSTLLKVIQGVIAPSVGSAVINGIAASAYGEDIPKL 420 + + + QG K+AIIGRSG GKST LK++QG + P+ G +NGI IP++ Sbjct: 355 ILNGFDFTLEQGEKVAIIGRSGTGKSTFLKLVQGALLPTAGKVTMNGIEVENLRPQIPEI 414 Query: 421 IAVLNQSPHLFDTTVANNIRLGKPDASDEEVKQAGKLAQLDDLISSLPEGYDTPVREAGQ 480 ++LNQ HLF TTV NNIRLG DA+DEEV A K QL D I S+P+GY T + E G+ Sbjct: 415 TSMLNQKAHLFSTTVLNNIRLGNQDATDEEVYAAAKKVQLHDFIMSMPDGYHTQMSEMGE 474 Query: 481 RFSGGERQRIALARILLQNTPAVVLDEPTVGLDPRTERELLATMFTAMADKTLIWVTHHL 540 RFSGGER RIALARILLQNTP V+LDEPTVGLDP TER+LLAT+F +ADK+LIWVTHHL Sbjct: 475 RFSGGERGRIALARILLQNTPIVILDEPTVGLDPITERDLLATIFETLADKSLIWVTHHL 534 Query: 541 VGAEQMDEVIFMENGTVEMRGTHXXXXXXXXXXXXXXXXDRP 582 VGAE+MD V+F+E G M G H DRP Sbjct: 535 VGAEKMDRVLFLEEGKTLMEGRHAKLMAEEPRYKRLYQLDRP 576 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.138 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,972,747,628 Number of extensions: 113555951 Number of successful extensions: 653446 Number of sequences better than 1.0e-05: 79979 Number of HSP's gapped: 576172 Number of HSP's successfully gapped: 84858 Length of query: 592 Length of database: 3,060,696,203 Length adjustment: 142 Effective length of query: 450 Effective length of database: 1,722,912,073 Effective search space: 775310432850 Effective search space used: 775310432850 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 134 (56.2 bits)