BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0044.0007.p
         (55 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K8N4.1 B3K8N4_9BACI Putative uncharacterized protein                100   7e-20
B1DC55.1 B1DC55_9BACL Putative uncharacterized protein                 85   2e-15
A8MKH5.1 A8MKH5_ALKOO Putative uncharacterized protein                 62   1e-08
Q8R6V2.1 Q8R6V2_THETN Putative uncharacterized protein                 57   4e-07
Q1Q2Z2.1 Q1Q2Z2_9BACT Putative uncharacterized protein                 57   5e-07

>B3K8N4.1 B3K8N4_9BACI Putative uncharacterized protein
          Length = 55

 Score = 99.8 bits (247), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 48/55 (87%), Positives = 52/55 (94%)

Query: 1  MYVVCKEHVELAIDKFVDEYEDAPDIVDLKETEFSDWDPPAKCAECDKNAEVLVV 55
          MYVVCKEHVELAI+ FVDEYEDAPDIVDLKETEFSDWDPP KCAEC+K+AE L+V
Sbjct: 1  MYVVCKEHVELAIENFVDEYEDAPDIVDLKETEFSDWDPPVKCAECEKHAEFLIV 55


>B1DC55.1 B1DC55_9BACL Putative uncharacterized protein
          Length = 56

 Score = 85.1 bits (209), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/56 (78%), Positives = 47/56 (83%), Gaps = 1/56 (1%)

Query: 1  MYVVCKEHVELAIDKFVDEYEDAPDIVDLKETEFSDWDPPAKCAEC-DKNAEVLVV 55
          MY VCK+HVELAIDKFVDEYEDAPDIVDLKETEF+DWDPP  C  C +  AE LVV
Sbjct: 1  MYCVCKQHVELAIDKFVDEYEDAPDIVDLKETEFADWDPPRSCDLCGEAAAEFLVV 56


>A8MKH5.1 A8MKH5_ALKOO Putative uncharacterized protein
          Length = 55

 Score = 62.4 bits (150), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 38/55 (69%)

Query: 1  MYVVCKEHVELAIDKFVDEYEDAPDIVDLKETEFSDWDPPAKCAECDKNAEVLVV 55
          MYVVC EH+E AID FVD YE +PDI +L++  FSDW  P  C  CD+  + LVV
Sbjct: 1  MYVVCGEHLEDAIDDFVDVYEQSPDIYELEKVSFSDWMAPKTCDFCDRIPKYLVV 55


>Q8R6V2.1 Q8R6V2_THETN Putative uncharacterized protein
          Length = 55

 Score = 57.4 bits (137), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 38/55 (69%)

Query: 1  MYVVCKEHVELAIDKFVDEYEDAPDIVDLKETEFSDWDPPAKCAECDKNAEVLVV 55
          MYVVC++H+E AI++FV+ YE  PDI  L E  F+DW  P KC  CD+  + LVV
Sbjct: 1  MYVVCEKHLEDAIEEFVEVYEQPPDIYKLDEVSFTDWLAPHKCDFCDEPPKYLVV 55


>Q1Q2Z2.1 Q1Q2Z2_9BACT Putative uncharacterized protein
          Length = 55

 Score = 57.0 bits (136), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 36/55 (65%)

Query: 1  MYVVCKEHVELAIDKFVDEYEDAPDIVDLKETEFSDWDPPAKCAECDKNAEVLVV 55
          MYVVC+EH+E+AID+FV+ YE  PDI  L +  FSDW  P     CD   + LVV
Sbjct: 1  MYVVCEEHIEIAIDEFVNVYEVPPDIYILDKGFFSDWTSPNHYDMCDNPPKYLVV 55


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.317    0.136    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 342,181,539
Number of extensions: 10122389
Number of successful extensions: 27013
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 27014
Number of HSP's successfully gapped: 8
Length of query: 55
Length of database: 3,060,696,203
Length adjustment: 28
Effective length of query: 27
Effective length of database: 2,796,907,783
Effective search space: 75516510141
Effective search space used: 75516510141
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 125 (52.8 bits)