BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0044.0004.p
         (126 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C0Z9V7.1 C0Z9V7_BREBN Putative uncharacterized protein                154   3e-36
Q2BDI4.1 Q2BDI4_9BACI YraH                                            151   2e-35
Q62NG3.1 Q62NG3_BACLD Glyoxalase I                                    151   2e-35
Q65CY7.1 Q65CY7_BACLD YraH                                            151   2e-35
C2ZYW9.1 C2ZYW9_BACCE Putative uncharacterized protein                151   2e-35

>C0Z9V7.1 C0Z9V7_BREBN Putative uncharacterized protein
          Length = 130

 Score =  154 bits (388), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 72/126 (57%), Positives = 90/126 (71%)

Query: 1   VEKNRIHKVGQIGIPVKEIGRAVHFYQNLLGLPLLFQTDRMAFFEXXXXXXXXXXPETAE 60
           ++ N I KVGQIGIPVK + +AVHFY+  LGLPLLFQT  MAFFE          PE  +
Sbjct: 1   MQTNLIQKVGQIGIPVKNLEKAVHFYKEQLGLPLLFQTGNMAFFECNGLRLMLSLPEKEQ 60

Query: 61  FANASSVVYFQVGDIQAMYTELIGKGVAFTGEPHMVNKMGQTETWMAFFRDSEGNTHALM 120
           F +ASSV+YFQV DIQ+ + +   + V F  EPH+V K+GQTETWM FF+D+E NTHA +
Sbjct: 61  FTHASSVLYFQVDDIQSTFEDFKKRDVTFIDEPHLVAKIGQTETWMTFFKDTEENTHAFV 120

Query: 121 SEVKGE 126
           SEV+GE
Sbjct: 121 SEVQGE 126


>Q2BDI4.1 Q2BDI4_9BACI YraH
          Length = 125

 Score =  151 bits (382), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/123 (58%), Positives = 87/123 (70%)

Query: 4   NRIHKVGQIGIPVKEIGRAVHFYQNLLGLPLLFQTDRMAFFEXXXXXXXXXXPETAEFAN 63
             I K+ QIGIPVK + RAV FY+++LGLPLLF  + MAFFE          PE  EFA+
Sbjct: 2   QEIQKISQIGIPVKNMERAVPFYRDVLGLPLLFSMETMAFFECGGQRLMLSLPEKEEFAH 61

Query: 64  ASSVVYFQVGDIQAMYTELIGKGVAFTGEPHMVNKMGQTETWMAFFRDSEGNTHALMSEV 123
            SSV+YFQV DI+    EL  KG  FTG+PHMV KMG TETWMAFF+D+EGNTHALMS++
Sbjct: 62  PSSVLYFQVEDIRKACRELAEKGAGFTGDPHMVAKMGDTETWMAFFQDTEGNTHALMSDI 121

Query: 124 KGE 126
             +
Sbjct: 122 PAQ 124


>Q62NG3.1 Q62NG3_BACLD Glyoxalase I
          Length = 122

 Score =  151 bits (381), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 73/118 (61%), Positives = 89/118 (75%)

Query: 6   IHKVGQIGIPVKEIGRAVHFYQNLLGLPLLFQTDRMAFFEXXXXXXXXXXPETAEFANAS 65
           I KVGQIG+PV+++ RA  FYQ++LGL LLFQTDRMAFFE          PE  EFA+A 
Sbjct: 3   IEKVGQIGVPVQDLERAAAFYQDVLGLSLLFQTDRMAFFECGEVRLLLSLPEKDEFAHAG 62

Query: 66  SVVYFQVGDIQAMYTELIGKGVAFTGEPHMVNKMGQTETWMAFFRDSEGNTHALMSEV 123
           SV+YFQV D+ A+Y E+  KGV+F  EPH+V K+ QTETW+AFF D+EGNT ALMSEV
Sbjct: 63  SVIYFQVEDLPAVYDEIATKGVSFPIEPHVVAKIEQTETWVAFFEDTEGNTLALMSEV 120


>Q65CY7.1 Q65CY7_BACLD YraH
          Length = 123

 Score =  151 bits (381), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 73/118 (61%), Positives = 89/118 (75%)

Query: 6   IHKVGQIGIPVKEIGRAVHFYQNLLGLPLLFQTDRMAFFEXXXXXXXXXXPETAEFANAS 65
           I KVGQIG+PV+++ RA  FYQ++LGL LLFQTDRMAFFE          PE  EFA+A 
Sbjct: 4   IEKVGQIGVPVQDLERAAAFYQDVLGLSLLFQTDRMAFFECGEVRLLLSLPEKDEFAHAG 63

Query: 66  SVVYFQVGDIQAMYTELIGKGVAFTGEPHMVNKMGQTETWMAFFRDSEGNTHALMSEV 123
           SV+YFQV D+ A+Y E+  KGV+F  EPH+V K+ QTETW+AFF D+EGNT ALMSEV
Sbjct: 64  SVIYFQVEDLPAVYDEIATKGVSFPIEPHVVAKIEQTETWVAFFEDTEGNTLALMSEV 121


>C2ZYW9.1 C2ZYW9_BACCE Putative uncharacterized protein
          Length = 125

 Score =  151 bits (381), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 70/125 (56%), Positives = 89/125 (71%)

Query: 1   VEKNRIHKVGQIGIPVKEIGRAVHFYQNLLGLPLLFQTDRMAFFEXXXXXXXXXXPETAE 60
           +E N I K+GQIG+PVK++ RA+ FY+  LGL LLF T+ MAFFE          PE  E
Sbjct: 1   METNIIQKIGQIGVPVKDLNRALDFYKEKLGLSLLFNTNSMAFFECNGLRLMLTLPEKEE 60

Query: 61  FANASSVVYFQVGDIQAMYTELIGKGVAFTGEPHMVNKMGQTETWMAFFRDSEGNTHALM 120
           FA +SSV+YF+V +I+  Y  L+GK V F  EPH+V KMGQTETWM FF+D+E NTHAL+
Sbjct: 61  FALSSSVIYFEVNNIKDTYERLLGKEVTFIDEPHVVAKMGQTETWMVFFQDTEDNTHALL 120

Query: 121 SEVKG 125
           SEV+ 
Sbjct: 121 SEVEA 125


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.321    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 672,038,026
Number of extensions: 22046332
Number of successful extensions: 39197
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 39204
Number of HSP's successfully gapped: 20
Length of query: 126
Length of database: 3,060,696,203
Length adjustment: 91
Effective length of query: 35
Effective length of database: 2,203,383,838
Effective search space: 77118434330
Effective search space used: 77118434330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)