BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0043.0034.p (262 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q8EMP9.1 Q8EMP9_OCEIH 3-oxoacyl-(Acyl carrier protein) reductase 259 2e-67 C1P7J8.1 C1P7J8_BACCO Short-chain dehydrogenase/reductase SDR 251 4e-65 C5D805.1 C5D805_9BACI Short-chain dehydrogenase/reductase SDR 250 1e-64 C4CKE5.1 C4CKE5_9CHLR Putative uncharacterized protein 248 4e-64 C3BJK7.1 C3BJK7_9BACI 3-oxoacyl-[acyl-carrier-protein] reductase 248 5e-64 >Q8EMP9.1 Q8EMP9_OCEIH 3-oxoacyl-(Acyl carrier protein) reductase Length = 263 Score = 259 bits (661), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 132/263 (50%), Positives = 170/263 (64%), Gaps = 1/263 (0%) Query: 1 MDLGLTGKSVFVAAASKGLGLATALEFAREGAKVTIASRNLEQLEAARRAIAEATGRE-V 59 MDLGL GKSV VAA+SKGLG ATA +FA EGAKV I+SR+ E+LE A+ I TG V Sbjct: 1 MDLGLHGKSVIVAASSKGLGKATAKQFAAEGAKVIISSRSQEELEKAQEEIRSETGNNNV 60 Query: 60 AVVQMDVNRPEEIGRAIEAAADYGGGLDVLVTNAGGPPGGGFEEMTDADWSGGYELTLMG 119 + + D+ P + + + +DVLV NAGGPP G F++++D +W+ +EL L+ Sbjct: 61 SYIVCDITNPASVKELVVKTIELNETIDVLVNNAGGPPAGNFDDVSDEEWTNAFELNLLS 120 Query: 120 TVRMIREALPYLXXXXXXXXXXXXXXXXKQPIGGLILSNVFRAGVSALFKTLASELAPEG 179 VR+IRE LPY+ KQPI LILSN FRAG+ L K+L+ ELAP+ Sbjct: 121 FVRLIREVLPYMRRQGSGHIVNIASSSIKQPIDNLILSNTFRAGIVGLAKSLSQELAPDN 180 Query: 180 ILINSLAPGRIGTDRILQLDSKRADARGISREQVEQEALAQIPAGRSGTPEEFGKAAVFL 239 ILIN++ PGRIGTDR+ LD A + + E V+ +A + IP GR G EEF V+L Sbjct: 181 ILINTIGPGRIGTDRVKHLDEFVAKQQDMRYEDVKSKAESSIPIGRYGKTEEFANLVVYL 240 Query: 240 GSFANTYITGQSLLIDGGMVKSL 262 S ANTYITGQSLL+DGGMVK+L Sbjct: 241 CSGANTYITGQSLLVDGGMVKAL 263 >C1P7J8.1 C1P7J8_BACCO Short-chain dehydrogenase/reductase SDR Length = 261 Score = 251 bits (641), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 131/262 (50%), Positives = 167/262 (63%), Gaps = 1/262 (0%) Query: 1 MDLGLTGKSVFVAAASKGLGLATALEFAREGAKVTIASRNLEQLEAARRAIAEATGREVA 60 MDLGL GK+ VAA+S+GLG A A + EGA V I SRN E+L+AA+ ++ +VA Sbjct: 1 MDLGLKGKAALVAASSQGLGKAVAKQLVMEGADVLITSRNEEKLQAAKEELSAYGTGKVA 60 Query: 61 VVQMDVNRPEEIGRAIEAAADYGGGLDVLVTNAGGPPGGGFEEMTDADWSGGYELTLMGT 120 ++ D+ PE+I ++ A D G LD+LV NAGGPP G FE+M D DW +EL L+ Sbjct: 61 YIRADITHPEDIRAMVQKARDTFGRLDILVNNAGGPPAGSFEDMADEDWQKSFELNLLSY 120 Query: 121 VRMIREALPYLXXXXXXXXXXXXXXXXKQPIGGLILSNVFRAGVSALFKTLASELAPEGI 180 +R+IREALP L K+PI GLILSN FR G+ L KTLA E AP I Sbjct: 121 IRIIREALPLLKKNGGRIINIASSSI-KEPIPGLILSNTFRTGIVGLSKTLAEEFAPYQI 179 Query: 181 LINSLAPGRIGTDRILQLDSKRADARGISREQVEQEALAQIPAGRSGTPEEFGKAAVFLG 240 L+N++ PGRI TDRI+ LD A+ G S E+V+ + L IP GR G P+EFGK FL Sbjct: 180 LVNTVGPGRIATDRIVHLDKVTAEKTGKSMEEVQAKELESIPLGRYGEPDEFGKFVAFLA 239 Query: 241 SFANTYITGQSLLIDGGMVKSL 262 S AN+Y+TG S LIDGG VKS+ Sbjct: 240 SEANSYVTGSSFLIDGGKVKSI 261 >C5D805.1 C5D805_9BACI Short-chain dehydrogenase/reductase SDR Length = 261 Score = 250 bits (638), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 127/262 (48%), Positives = 168/262 (64%), Gaps = 1/262 (0%) Query: 1 MDLGLTGKSVFVAAASKGLGLATALEFAREGAKVTIASRNLEQLEAARRAIAEATGREVA 60 M+L L+GK+ V A+S+GLG A A + EGA V I SRN E+L+ + + + +VA Sbjct: 1 MELRLSGKTALVVASSQGLGKAIARQLVLEGANVMITSRNEEKLQEVEKELRDLHKGQVA 60 Query: 61 VVQMDVNRPEEIGRAIEAAADYGGGLDVLVTNAGGPPGGGFEEMTDADWSGGYELTLMGT 120 +Q D+ + E+I R ++ D G +D+LV NAGGPP G FE ++D DW +EL L+ Sbjct: 61 HLQADITKAEDIRRLVQKTVDIYGTIDLLVNNAGGPPAGTFETISDEDWYHAFELNLLSY 120 Query: 121 VRMIREALPYLXXXXXXXXXXXXXXXXKQPIGGLILSNVFRAGVSALFKTLASELAPEGI 180 +RMIREALPYL K+PI GL+LSN FR G+ L KTLA E AP I Sbjct: 121 IRMIREALPYLKKKGGKIVNIASSSI-KEPIPGLLLSNTFRTGIVGLTKTLAFEFAPYNI 179 Query: 181 LINSLAPGRIGTDRILQLDSKRADARGISREQVEQEALAQIPAGRSGTPEEFGKAAVFLG 240 LIN++APGRI T+R+ LD A+ GIS+E++E + IP GR GTPEEF FL Sbjct: 180 LINTVAPGRIATERVAFLDKINAEKLGISKEEMEARMKSMIPLGRYGTPEEFANVVTFLL 239 Query: 241 SFANTYITGQSLLIDGGMVKSL 262 S ANTYITGQSL++DGGMVK++ Sbjct: 240 SEANTYITGQSLIVDGGMVKAI 261 >C4CKE5.1 C4CKE5_9CHLR Putative uncharacterized protein Length = 262 Score = 248 bits (633), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 132/262 (50%), Positives = 168/262 (64%), Gaps = 1/262 (0%) Query: 1 MDLGLTGKSVFVAAASKGLGLATALEFAREGAKVTIASRNLEQLEAARRAIAEATGREVA 60 MDLGLTGK V AAS GLG A AL AREGA+V ++SRN ++ I A G +A Sbjct: 1 MDLGLTGKVALVPAASSGLGRAVALALAREGAQVVVSSRNQAAVDEVAGEIRAAGGDALA 60 Query: 61 VVQMDVNRPEEIGRAIEAAADYGGGLDVLVTNAGGPPGGGFEEMTDADWSGGYELTLMGT 120 V DV +P ++ R ++AA D GG+DVL+TNAGGPP G F++ DADW +ELTLM Sbjct: 61 VAA-DVTKPADLERLVQAAIDRYGGIDVLITNAGGPPAGTFDKFNDADWQAAFELTLMSA 119 Query: 121 VRMIREALPYLXXXXXXXXXXXXXXXXKQPIGGLILSNVFRAGVSALFKTLASELAPEGI 180 VR+IR ALP + KQPI L+LSNV RAGV+ L KTLA ELAP+GI Sbjct: 120 VRLIRLALPSMRARGGGVIIAMTSSSIKQPIPNLLLSNVMRAGVAGLAKTLADELAPDGI 179 Query: 181 LINSLAPGRIGTDRILQLDSKRADARGISREQVEQEALAQIPAGRSGTPEEFGKAAVFLG 240 +N++ PGRI T R+ QLD A+ +G+ +EQ ++IP GR GTPEEF A FL Sbjct: 180 RVNTIVPGRIATPRVAQLDRVNAERQGVDVAVIEQRETSRIPMGRYGTPEEFADAVAFLA 239 Query: 241 SFANTYITGQSLLIDGGMVKSL 262 S +YITG +L +DGGM++SL Sbjct: 240 SERASYITGATLQVDGGMIRSL 261 >C3BJK7.1 C3BJK7_9BACI 3-oxoacyl-[acyl-carrier-protein] reductase Length = 261 Score = 248 bits (632), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 129/262 (49%), Positives = 163/262 (62%), Gaps = 1/262 (0%) Query: 1 MDLGLTGKSVFVAAASKGLGLATALEFAREGAKVTIASRNLEQLEAARRAIAEATGREVA 60 M+LGL GK+ V A+S+GLG A A E +EG V + SRN E+L + ++ + Sbjct: 1 MELGLAGKTALVVASSQGLGKAIATELVKEGTNVMLLSRNEEKLASLQKELIALNKGTAM 60 Query: 61 VVQMDVNRPEEIGRAIEAAADYGGGLDVLVTNAGGPPGGGFEEMTDADWSGGYELTLMGT 120 DV E + +A+E G +D+LV NAGGP G FE++TD DW +EL L+ Sbjct: 61 YTVCDVTNKENMKQAVEYTVQTFGTIDILVNNAGGPKPGTFEQLTDEDWYNSFELNLLSY 120 Query: 121 VRMIREALPYLXXXXXXXXXXXXXXXXKQPIGGLILSNVFRAGVSALFKTLASELAPEGI 180 VRMIRE LPY+ K+PI GL+LSN FR G++ L KTLASELAP I Sbjct: 121 VRMIREVLPYMKEQGGKIINIASSSI-KEPIPGLLLSNTFRVGITGLAKTLASELAPYNI 179 Query: 181 LINSLAPGRIGTDRILQLDSKRADARGISREQVEQEALAQIPAGRSGTPEEFGKAAVFLG 240 LIN++APGRI TDRI LD A+ RGI+ E V+++ A IP GR G P EF K A FL Sbjct: 180 LINTIAPGRIATDRIASLDETAAEKRGITVEDVQKQYEAIIPLGRYGRPSEFAKFATFLA 239 Query: 241 SFANTYITGQSLLIDGGMVKSL 262 S ANTY+TGQS L+DGGMVKSL Sbjct: 240 SDANTYMTGQSFLVDGGMVKSL 261 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.135 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,393,328,502 Number of extensions: 56693017 Number of successful extensions: 278643 Number of sequences better than 1.0e-05: 20295 Number of HSP's gapped: 250970 Number of HSP's successfully gapped: 20450 Length of query: 262 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 129 Effective length of database: 1,807,701,208 Effective search space: 233193455832 Effective search space used: 233193455832 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)