BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0043.0032.p
         (90 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KEL8.1 B3KEL8_9BACI 50S ribosomal protein L31                       140   3e-32
Q9K6E9.1 RL31B_BACHD 50S ribosomal protein L31 type B                 120   4e-26
O34967.1 RL31B_BACSU 50S ribosomal protein L31 type B                 117   5e-25
A8VSM4.1 A8VSM4_9BACI 50S ribosomal protein L31                       116   6e-25
C2D1N2.1 C2D1N2_LACBR Ribosomal protein L31                           115   1e-24

>B3KEL8.1 B3KEL8_9BACI 50S ribosomal protein L31
          Length = 82

 Score =  140 bits (354), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 64/82 (78%), Positives = 75/82 (91%)

Query: 9  MKEGIHPKFNQVIFLDASVGFKFLSSSTKSSNETMEWEDGNTYPVIRVDSSSASHPFYTG 68
          M++GIHP F +VIFLDASVGF FLS+STK+S ETMEWEDG TYPVIRVDSSSASHPF+TG
Sbjct: 1  MQKGIHPTFQKVIFLDASVGFSFLSASTKTSTETMEWEDGQTYPVIRVDSSSASHPFFTG 60

Query: 69 KQRDTETGGRVDKFKQRLAQKK 90
          KQ++TE GGRVDKFK+RL+ K+
Sbjct: 61 KQKNTEIGGRVDKFKKRLSYKR 82


>Q9K6E9.1 RL31B_BACHD 50S ribosomal protein L31 type B
          Length = 81

 Score =  120 bits (301), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 53/81 (65%), Positives = 67/81 (82%)

Query: 9  MKEGIHPKFNQVIFLDASVGFKFLSSSTKSSNETMEWEDGNTYPVIRVDSSSASHPFYTG 68
          MK GIHP + +V+F+D S GFKFLS STK+SNET+EWEDGNTYP+I+V+ SS SHPFYTG
Sbjct: 1  MKPGIHPDYKKVVFMDTSTGFKFLSGSTKTSNETIEWEDGNTYPLIKVEISSDSHPFYTG 60

Query: 69 KQRDTETGGRVDKFKQRLAQK 89
          KQ+  + GGRVD+FK++   K
Sbjct: 61 KQKLADAGGRVDRFKKKYNLK 81


>O34967.1 RL31B_BACSU 50S ribosomal protein L31 type B
          Length = 82

 Score =  117 bits (292), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 52/77 (67%), Positives = 67/77 (87%)

Query: 9  MKEGIHPKFNQVIFLDASVGFKFLSSSTKSSNETMEWEDGNTYPVIRVDSSSASHPFYTG 68
          MKEGIHPK ++VIF D + G++FLS+STK+SNET EWEDGNTYPVI+V+ SS +HPFYTG
Sbjct: 1  MKEGIHPKNHKVIFQDVNSGYRFLSTSTKTSNETAEWEDGNTYPVIKVEVSSDTHPFYTG 60

Query: 69 KQRDTETGGRVDKFKQR 85
          +Q+  E GGRV++FK+R
Sbjct: 61 RQKFNEKGGRVEQFKKR 77


>A8VSM4.1 A8VSM4_9BACI 50S ribosomal protein L31
          Length = 83

 Score =  116 bits (291), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 51/79 (64%), Positives = 66/79 (83%)

Query: 9  MKEGIHPKFNQVIFLDASVGFKFLSSSTKSSNETMEWEDGNTYPVIRVDSSSASHPFYTG 68
          MKEGIHPK++QV+F D S GF FL+ ST+SS+ET+EWEDGNTYP++ V+ SS SHPFYTG
Sbjct: 4  MKEGIHPKYHQVVFKDVSSGFMFLTGSTRSSSETIEWEDGNTYPLLTVEVSSDSHPFYTG 63

Query: 69 KQRDTETGGRVDKFKQRLA 87
          KQ+  + GGRVD+FK++  
Sbjct: 64 KQKFADAGGRVDRFKKKYG 82


>C2D1N2.1 C2D1N2_LACBR Ribosomal protein L31
          Length = 83

 Score =  115 bits (289), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/81 (64%), Positives = 67/81 (82%)

Query: 9  MKEGIHPKFNQVIFLDASVGFKFLSSSTKSSNETMEWEDGNTYPVIRVDSSSASHPFYTG 68
          MK+GIHP ++QV+F D+S GFKFLS STK+S+ET+EWEDGNTYP+IRV+ SS SHPFYTG
Sbjct: 1  MKKGIHPDYHQVVFQDSSTGFKFLSGSTKTSDETVEWEDGNTYPLIRVEISSDSHPFYTG 60

Query: 69 KQRDTETGGRVDKFKQRLAQK 89
          KQ+ T+  G VD+F ++   K
Sbjct: 61 KQKFTQADGAVDRFNKKYGLK 81


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.312    0.128    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 529,774,436
Number of extensions: 17941128
Number of successful extensions: 29535
Number of sequences better than 1.0e-05: 918
Number of HSP's gapped: 29021
Number of HSP's successfully gapped: 918
Length of query: 90
Length of database: 3,060,696,203
Length adjustment: 60
Effective length of query: 30
Effective length of database: 2,495,435,303
Effective search space: 74863059090
Effective search space used: 74863059090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 125 (52.8 bits)