BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0043.0030.p (344 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K447.1 B3K447_9BACI Copper amine oxidase domain protein 249 3e-64 C0ZJS4.1 C0ZJS4_BREBN Protease inhibitor BBRPI 193 2e-47 P43131.1 SPI_BRECH Protease inhibitor 187 1e-45 B8I8P0.1 B8I8P0_CLOCE Copper amine oxidase domain protein 74 2e-11 B1D9D4.1 B1D9D4_9BACL Copper amine oxidase domain protein 68 2e-09 >B3K447.1 B3K447_9BACI Copper amine oxidase domain protein Length = 343 Score = 249 bits (636), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 137/326 (42%), Positives = 206/326 (63%), Gaps = 9/326 (2%) Query: 23 VSAAPSAASTPNHSTIQ--TPSAGAAT--FSISVNGSALSEPGFQSPGSKEPLLPLRAVA 78 VS +A + P IQ P +A + + VNG ++ GF + G+K+ ++PLR+V+ Sbjct: 19 VSGGAAAYAAPQTGDIQEQKPVVISAIIDYGVLVNGKEVAGAGFMNAGAKQVMIPLRSVS 78 Query: 79 GALGFTVAWNAQTKAVDLNK-GS-IFTSVKSGKDRYAVNKMYIQLGTAPQTKQNKLYVPA 136 ALGF + WN Q ++ +L + GS I+T V++GKD+YAVNKMY LG AP + LYVPA Sbjct: 79 EALGFELEWNQQDRSAELTQSGSPIWTLVQTGKDQYAVNKMYKSLGAAPVNVKGTLYVPA 138 Query: 137 SFVSKVLRQSVSAEGQRIEINPAAEHISET--GVITAITDADSYQSVRIRGIGTEGMILN 194 SF S+VLR +V+ +G ++ I E ET G IT + + Q+V I G GTEG++LN Sbjct: 139 SFFSEVLRVNVAVDGTKVNITSEEEVKKETVVGTITEVIHNEERQAVHINGTGTEGIVLN 198 Query: 195 VGKDTRLNRQDGSELAFSELHIGMTVEAQHSLISTRSLPPQTPAYQITVLDGETQDDLLG 254 V ++T + +G ++ +L GM +EA HSL T SLPPQT AY+I+V + + + L Sbjct: 199 VDENTVIRDAEGKKIELKDLAKGMKIEAVHSLAMTMSLPPQTYAYEISVKSDKEETEQLA 258 Query: 255 TAGTVQQVTTAEDGTVSFRIRGSALSEKSQNEVVLRLAKDTVVINENGETASPADVIQGA 314 TAG + + A+ G + I+G L+E+S NEVVL L +TVV+N++G+ +D+ A Sbjct: 259 TAGAITDI-NADGGNLRVTIKGKGLTEQSPNEVVLNLTPETVVVNKDGKALKTSDLTDDA 317 Query: 315 EVISFYSPLLTRSLPPSGTALKVVLK 340 E+I +Y P+LT+SLPP G A+K+VL+ Sbjct: 318 EIIGYYGPVLTKSLPPIGNAIKIVLQ 343 >C0ZJS4.1 C0ZJS4_BREBN Protease inhibitor BBRPI Length = 324 Score = 193 bits (490), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 106/294 (36%), Positives = 166/294 (56%), Gaps = 2/294 (0%) Query: 48 FSISVNGSALSEPGFQSPGSKEPLLPLRAVAGALGFTVAWNAQTKAVDLNKGSIFTSVKS 107 S+++NG A+++ G + L+PLR VA ALGF V+WN + KA ++ +G+I + K Sbjct: 32 LSVNINGQAIAQDAIFDKGQQTVLVPLRPVAEALGFKVSWNDKEKAAEVQRGAITSYAKE 91 Query: 108 GKDRYAVNKMYIQLGTAPQTKQNKLYVPASFVSKVLRQSVSAEGQRIEINPAAEHISETG 167 G+DRY KMY LG P+ YVP FV ++L+ V+ + + TG Sbjct: 92 GEDRYPFAKMYKTLGAEPRVLNGSTYVPVKFVDEILQADVNVTDDTVTVVEDEIAPMRTG 151 Query: 168 VITAITDADSYQSVRIRGIGTEGMILNVGKDTRLNRQDGSELAFSELHIGMTVEAQHSLI 227 IT I +D SV + I G+IL++ DT++ + G L +L +GM V+A Sbjct: 152 TITNINKSDKGYSVTLN-IYESGIILHLTADTKITDEAGKVLKPEDLKLGMAVDATTEKF 210 Query: 228 STRSLPPQTPAYQITVLDGETQDDLLGTAGTVQQVTTAEDGTVSFRIRGSALSEKSQNEV 287 SLPPQT A ITV G D+LGTAG V ++ +DG + G ++ SQ ++ Sbjct: 211 MAMSLPPQTSALSITVKGGLETQDILGTAGKVASISADKDGNYKMLVEGRGITGTSQEKI 270 Query: 288 VLRLAKDTVVIN-ENGETASPADVIQGAEVISFYSPLLTRSLPPSGTALKVVLK 340 L + + TV+IN + + SPA++ + +V++FY P++T+SLPP GTA K+V++ Sbjct: 271 NLNITEKTVIINARDNKVLSPAELKEDMQVVAFYGPMMTKSLPPIGTAEKIVVE 324 >P43131.1 SPI_BRECH Protease inhibitor Length = 326 Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 111/298 (37%), Positives = 168/298 (56%), Gaps = 8/298 (2%) Query: 48 FSISVNGSALSEPGFQSPGSKEPLLPLRAVAGALGFTVAWNAQTKAVDLNKGSIFTSVKS 107 S++VNG + + G + L+PLR VA +LGF V WNA+TKA ++NKG+IF+ K Sbjct: 32 LSVNVNGQHIEQAAIFDKGQQTVLVPLRDVAESLGFQVKWNAETKAAEVNKGAIFSYAKV 91 Query: 108 GKDRYAVNKMYIQLGTAPQTKQNKLYVPASFVSKVLRQSVSAEGQRIEINPAAEHIS--E 165 G+DRY KMY LG P+ YVP +FV ++L+ V+ + + ++ Sbjct: 92 GEDRYPFAKMYKTLGAEPRLLNGNTYVPVAFVDEILQAEVNVTDDAVTVVDEESDVAPVR 151 Query: 166 TGVITAITD-ADSYQSVRIRGIGTEGMILNVGKDTRLNRQDGSELAFSELHIGMTVEAQH 224 TG IT + D S ++ G T G+IL+V K+T++ DG EL +L +GM VEA H Sbjct: 152 TGTITTLNKREDGGVSFQLNGYET-GIILHVDKETKITTADGKELKPEDLQLGMEVEATH 210 Query: 225 SLISTRSLPPQTPAYQITVLDGETQDDLLGTAGTVQQVTTAEDGTVSFRIRGSALSEKSQ 284 S+ PQ+ A I V G ++LGTAG V + ++G+ + G AL+E + Sbjct: 211 QKFMAMSM-PQSGAVSIVVKSGLETPEVLGTAGKVASIDKDQEGSYKMLVEGQALAENAP 269 Query: 285 NEVVLRLAKDTVVIN--ENGETASPADVIQGAEVISFYSPLLTRSLPPSGTALKVVLK 340 +V L + KDT +++ +N E A P D+ +V ++Y P LTRSLPP G A K+V++ Sbjct: 270 EKVALIVGKDTKIVSAKDNKELA-PEDLKAEMKVFAYYGPKLTRSLPPIGVAEKIVVE 326 >B8I8P0.1 B8I8P0_CLOCE Copper amine oxidase domain protein Length = 338 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 43/100 (43%), Positives = 57/100 (57%), Gaps = 4/100 (4%) Query: 45 AATFSISVNGSALSEPGFQSPGSKEPLLPLRAVAGALGFTVAWNAQTKAVDLNKGSIFTS 104 AA+ SI VN A+ P + ++PLRA+A LGF V+W +T+ V L KG S Sbjct: 226 AASMSIVVNNEAIEAPSAYTNKKGTFMVPLRAIAEYLGFNVSWEGKTQTVTLGKG---IS 282 Query: 105 VKSGKDRYAVNKMY-IQLGTAPQTKQNKLYVPASFVSKVL 143 + GKD Y K IQLGTAP+ + K +VP SF +VL Sbjct: 283 LTIGKDYYIYMKTAPIQLGTAPEIVEGKTFVPLSFFKEVL 322 >B1D9D4.1 B1D9D4_9BACL Copper amine oxidase domain protein Length = 371 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 33/77 (42%), Positives = 50/77 (64%), Gaps = 1/77 (1%) Query: 72 LPLRAVAGALGFTVAWNAQTKAVDLNKGSIFTSVKSGKDRYAVNKMY-IQLGTAPQTKQN 130 +PLR A ALG+ + W+ +T++ ++++ + +TSV GK+ Y +NKM IQL AP+ + Sbjct: 282 IPLRKAAEALGYKIKWSNKTQSAEISRDAQWTSVTVGKNSYTINKMAPIQLFAAPKLIKG 341 Query: 131 KLYVPASFVSKVLRQSV 147 LYVP F SKVL V Sbjct: 342 SLYVPDEFFSKVLHLDV 358 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.310 0.127 0.343 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,762,866,659 Number of extensions: 68562175 Number of successful extensions: 169635 Number of sequences better than 1.0e-05: 11 Number of HSP's gapped: 169640 Number of HSP's successfully gapped: 12 Length of query: 344 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 208 Effective length of database: 1,779,438,163 Effective search space: 370123137904 Effective search space used: 370123137904 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 131 (55.1 bits)