BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0043.0023.p (255 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KA20.1 B3KA20_9BACI Response regulator receiver 268 5e-70 A6TTD1.1 A6TTD1_ALKMQ Response regulator receiver protein 239 1e-61 B1DAK3.1 B1DAK3_9BACL Two component transcriptional regulator, A... 238 4e-61 A4IP91.1 A4IP91_GEOTN Two-component response regulator 234 4e-60 B4BMC6.1 B4BMC6_9BACI Two component transcriptional regulator, A... 234 4e-60 >B3KA20.1 B3KA20_9BACI Response regulator receiver Length = 261 Score = 268 bits (684), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 137/255 (53%), Positives = 175/255 (68%) Query: 1 VDDEPRTRQGIRQTLEVWAAGRYIVETAENGIDARERLLNGRVHLLITDVRMPEVSGLDL 60 VDDEPRTR+G+ +TLE W++GR + TA +G++A E L HL++TD+RMPE+ GL+L Sbjct: 7 VDDEPRTREGVGKTLEAWSSGRCNIVTATSGVEALEWLQEQVAHLVVTDIRMPEIGGLEL 66 Query: 61 IRSLEGQVRKPVIIVISGYAEFDYVQQALRLGAVNYLLKPLDKEELXXXXXXXXXXXXXX 120 I L PVIIVISGY+EFDY ++AL+ G V+YLLKPLDK +L Sbjct: 67 IERLHELEHPPVIIVISGYSEFDYARKALQYGVVDYLLKPLDKRKLVTAVESALERREKI 126 Query: 121 XXXXXXXXXVDHKLLEIDPDTAGMGEPVKEALAYVEQHLHEQLTMAEVAGRIHLNASYFS 180 VD KLLE G V+EAL YV+QHL E +++ EVA +HLN+SYFS Sbjct: 127 DRIERMEKLVDPKLLEAAQQDKGYSVQVQEALKYVDQHLQEPVSLKEVAEVLHLNSSYFS 186 Query: 181 VLFKEQTGVPFSEYLSRLRIQRAKELLLQTSLPIIEIGERVGYRTDKYFIKVFKSLEDMS 240 VLFKEQTG+ FSEYL+R R+QRAKELL T LPI EI E+VGY+T KYF+KVF+ LE++S Sbjct: 187 VLFKEQTGLTFSEYLTRRRVQRAKELLAGTPLPISEIAEKVGYQTAKYFVKVFRDLEEVS 246 Query: 241 PSRYRHQMKDGRGEI 255 PS+YRH + D EI Sbjct: 247 PSQYRHSVSDSGEEI 261 >A6TTD1.1 A6TTD1_ALKMQ Response regulator receiver protein Length = 263 Score = 239 bits (611), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 117/251 (46%), Positives = 164/251 (65%) Query: 1 VDDEPRTRQGIRQTLEVWAAGRYIVETAENGIDARERLLNGRVHLLITDVRMPEVSGLDL 60 VDDEPRTRQG+++T+ +W+ G+Y + A + +A + L RVHLLITD+ MPE SGL + Sbjct: 10 VDDEPRTRQGLKKTIGIWSEGKYEIICAASAKEAIDVLEQQRVHLLITDICMPETSGLKM 69 Query: 61 IRSLEGQVRKPVIIVISGYAEFDYVQQALRLGAVNYLLKPLDKEELXXXXXXXXXXXXXX 120 + L + K V+I++SG++EFDY QQA+RLG VNYLLKP++K +L Sbjct: 70 LEQLNMKKHKLVVIILSGFSEFDYAQQAIRLGVVNYLLKPINKHKLIESVEKAMEVEANQ 129 Query: 121 XXXXXXXXXVDHKLLEIDPDTAGMGEPVKEALAYVEQHLHEQLTMAEVAGRIHLNASYFS 180 VD KLL I + + P+KEAL +V+++ QL++ +VA +HLN+SY S Sbjct: 130 ERVGKIEKLVDGKLLNIRSENYRIQSPIKEALRFVDENGRGQLSLRDVANHVHLNSSYLS 189 Query: 181 VLFKEQTGVPFSEYLSRLRIQRAKELLLQTSLPIIEIGERVGYRTDKYFIKVFKSLEDMS 240 VLFKEQT + FSEY++R R++ AK LL+ T L I EI VGY+T KYFIK+FK E ++ Sbjct: 190 VLFKEQTNLTFSEYMTRRRLENAKNLLMSTDLTIDEIAHEVGYQTAKYFIKLFKEFEGVT 249 Query: 241 PSRYRHQMKDG 251 PSR+R D Sbjct: 250 PSRFRKSNNDN 260 >B1DAK3.1 B1DAK3_9BACL Two component transcriptional regulator, AraC family Length = 262 Score = 238 bits (606), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 125/255 (49%), Positives = 169/255 (66%) Query: 1 VDDEPRTRQGIRQTLEVWAAGRYIVETAENGIDARERLLNGRVHLLITDVRMPEVSGLDL 60 VDDEPRTR+G+R+ LE W+AGRY + T+ + ++A E L +L+ITD+RMPE++GL+L Sbjct: 7 VDDEPRTREGVRKVLESWSAGRYEITTSSSAVEALEWLKANEANLVITDIRMPEINGLEL 66 Query: 61 IRSLEGQVRKPVIIVISGYAEFDYVQQALRLGAVNYLLKPLDKEELXXXXXXXXXXXXXX 120 + L + PV+IVISG+ +FDY +AL+ G + YLLKPLDK++L Sbjct: 67 VEKLRDRQHPPVVIVISGHPQFDYAHKALQFGVIEYLLKPLDKKKLVEAVELAFRKEEEL 126 Query: 121 XXXXXXXXXVDHKLLEIDPDTAGMGEPVKEALAYVEQHLHEQLTMAEVAGRIHLNASYFS 180 VD KLLE PVKEA+ Y+E+HLHE +TM ++A +H+NASYFS Sbjct: 127 NRIERMERFVDTKLLETTEQETQYSAPVKEAIQYLEEHLHEPVTMRDIADHLHMNASYFS 186 Query: 181 VLFKEQTGVPFSEYLSRLRIQRAKELLLQTSLPIIEIGERVGYRTDKYFIKVFKSLEDMS 240 VLFKEQTG+ FS+YL+R R+QRAKELL T L I EI E+ GY+T KYF+KVF+S E +S Sbjct: 187 VLFKEQTGLTFSDYLTRRRVQRAKELLTNTRLSINEIAEKAGYQTAKYFVKVFRSHEGVS 246 Query: 241 PSRYRHQMKDGRGEI 255 P +YR + I Sbjct: 247 PGQYRKNVSHAEETI 261 >A4IP91.1 A4IP91_GEOTN Two-component response regulator Length = 263 Score = 234 bits (598), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 110/251 (43%), Positives = 163/251 (64%) Query: 1 VDDEPRTRQGIRQTLEVWAAGRYIVETAENGIDARERLLNGRVHLLITDVRMPEVSGLDL 60 VDDEPR R+GI++ LE WA+G++ + TA NG +A L +VH+L+TD+RMPE++GL++ Sbjct: 9 VDDEPRAREGIKRALEKWASGKHRIMTASNGKEALTILQQEKVHVLLTDIRMPEITGLEV 68 Query: 61 IRSLEGQVRKPVIIVISGYAEFDYVQQALRLGAVNYLLKPLDKEELXXXXXXXXXXXXXX 120 + + + PV+I+IS Y +FDY Q+A+ LG +NYLLKP+ K EL Sbjct: 69 LERMNEEEVSPVVIIISAYPDFDYAQKAIGLGVLNYLLKPIKKSELIDAIEKAIHVSNKK 128 Query: 121 XXXXXXXXXVDHKLLEIDPDTAGMGEPVKEALAYVEQHLHEQLTMAEVAGRIHLNASYFS 180 +D KL+ ++ EPV+EA+ +++ HL + L++ +VA +HLN SYFS Sbjct: 129 ERERVIEKVIDDKLINAFDQSSQTREPVREAIQFIDHHLKQDLSLKDVAEHVHLNPSYFS 188 Query: 181 VLFKEQTGVPFSEYLSRLRIQRAKELLLQTSLPIIEIGERVGYRTDKYFIKVFKSLEDMS 240 LFKEQ + FSEYL+R R+QRAKELL+ T + + EI E GY+T KYFI++FK +E + Sbjct: 189 TLFKEQMKLTFSEYLTRRRMQRAKELLITTRMTVSEIAEECGYKTTKYFIRLFKEMEGET 248 Query: 241 PSRYRHQMKDG 251 P+ YR + G Sbjct: 249 PNSYRKRQNKG 259 >B4BMC6.1 B4BMC6_9BACI Two component transcriptional regulator, AraC family Length = 263 Score = 234 bits (598), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 110/251 (43%), Positives = 163/251 (64%) Query: 1 VDDEPRTRQGIRQTLEVWAAGRYIVETAENGIDARERLLNGRVHLLITDVRMPEVSGLDL 60 VDDEPR R+GI++ LE WA+G++ + TA NG +A L +VH+L+TD+RMPE++GL++ Sbjct: 9 VDDEPRAREGIKRALEKWASGKHRIMTASNGKEALTILQQEKVHVLLTDIRMPEITGLEV 68 Query: 61 IRSLEGQVRKPVIIVISGYAEFDYVQQALRLGAVNYLLKPLDKEELXXXXXXXXXXXXXX 120 + + + PV+I+IS Y +FDY Q+A+ LG +NYLLKP+ K EL Sbjct: 69 LERMNEEEVSPVVIIISAYPDFDYAQKAIGLGVLNYLLKPIKKSELIDAIEKAIHVSNKK 128 Query: 121 XXXXXXXXXVDHKLLEIDPDTAGMGEPVKEALAYVEQHLHEQLTMAEVAGRIHLNASYFS 180 +D KL+ ++ EPV+EA+ +++ HL + L++ +VA +HLN SYFS Sbjct: 129 ERERVIEKVIDDKLINAFDQSSQTREPVREAIQFIDHHLKQDLSLKDVAEHVHLNPSYFS 188 Query: 181 VLFKEQTGVPFSEYLSRLRIQRAKELLLQTSLPIIEIGERVGYRTDKYFIKVFKSLEDMS 240 LFKEQ + FSEYL+R R+QRAKELL+ T + + EI E GY+T KYFI++FK +E + Sbjct: 189 TLFKEQMKLTFSEYLTRRRMQRAKELLITTRMTVSEIAEECGYKTTKYFIRLFKEMEGET 248 Query: 241 PSRYRHQMKDG 251 P+ YR + G Sbjct: 249 PNSYRKRQNKG 259 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.139 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,344,066,592 Number of extensions: 48820228 Number of successful extensions: 199725 Number of sequences better than 1.0e-05: 7451 Number of HSP's gapped: 213196 Number of HSP's successfully gapped: 8029 Length of query: 255 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 122 Effective length of database: 1,807,701,208 Effective search space: 220539547376 Effective search space used: 220539547376 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)